Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0015071

Physical Location & Seq

Genomic Coordinates Forward (+)

16028897 .. 16029664

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCTTCCTTGTCTACAATTCCGATACGCCTCCTCAAGGATGACGAGACCGAACGGCCATGGTTCCATCACAAAAGCTCATACGACTTCAACAGCAAGATTATGCTAACAGCCATCATTTCATTATCCGTCGTCGTTTTCCTAGTAATCGTGCTTCATACCTATGCAAGGTGTGTCCTCCGACGCCAAGCCCTTCGCCGAGCGGCCTGGCATCATAATTTGGGATCAACCGTGGCTCATGCCCACTCCGTTGAGTCTGAGCCACCCAAGATTGGACTCGAGCCATCCGTCATCGCCGCCTTGCCCATATTCGTATTCAGACGTGCGGACGGTCGAGATGGTCGGGATGACAACGCAATAGAATGCGCTGTGTGCTTGAGCATGTTGGAGGATGAAGAAATGGCACGGCTGCTTGTAAATTGCAAGCATAGTTTCCATGCAGAGTGCATCGACAAGTGGTTGAGTTCCCACACTACCTGCCCCATTTGCCGGACAGAGGCGGAGCCACGTCTGCAGCTCGAGCCACGAGAAGGTCCCGCGGCCGGAACGCCCACGGCTCCGCAATTGGAGCATGTGAATTCTGTGTTGTCACCATCATGTATGGAAGGGACATCAGAAGGGGCTCAATCCAGCTCAGCTGGTACTAAAGTAAATGCTCCTGTTTCGAGGTTGAGTTCTTTCAGAAGAATCCTTAGCATGGACAGATCTTCGGGACGGGTTCAATCTTGTGGTCAAGAAGATGGTATAGAAGACTTAGAGAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

256

Amino Acids

28.23

Weight (kDa)

6.26

Isoelectric Point (pI)

67.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	121 - 164	2.2e-13	Ring finger domain
zf-C3HC4_2	PF13923	121 - 163	1.5e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	121 - 150	3.6e-08	RING-like zinc finger
zf-RING_5	PF14634	121 - 165	6.6e-07	zinc-RING finger domain
zf-rbx1	PF12678	122 - 164	1.8e-10	RING-H2 zinc finger domain
zf-C3HC4	PF00097	122 - 163	3e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	122 - 161	6.4e-06	RING-type zinc-finger
zf-ANAPC11	PF12861	136 - 166	3.7e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42350 AT2G42360
fragaria_vesca	FvH4_6g27024
malus_domestica	MD09G1240700.v1.1 MD17G1233600.v1.1
prunus_persica	Prupe.3G125000_v2.0.a1
pyrus_communis	pycom09g15940 pycom17g23670
rosa_chinensis	RchiOBHm_Chr2g0128891
rosa_laevigata	RLG00000019039
rosa_rugosa	Rorug02G0282200
rosa_samantha	Rh2AG334800 Rh2BG342800 Rh2CG321800 Rh2DG359400
rosa_wichuraiana	Rw2G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	485
AccBSI	CCGCTC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	539
AciI	CCGC	7 cut(s)	203, 297, 326, 500, 537, 539, 560
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	2 cut(s)	56, 540
AcsI	RAATTY	1 cut(s)	577
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	1 cut(s)	643
AfiI	CCNNNNNNNGG	8 cut(s)	37, 168, 272, 489, 496, 530, 542, 697
AgsI	TTSAA	2 cut(s)	91, 722
AjiI	CACGTC	2 cut(s)	323, 509
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	4 cut(s)	78, 517, 633, 638
AluI	AGCT	4 cut(s)	78, 517, 633, 638
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	232
Ama87I	CYCGRG	2 cut(s)	278, 518
AoxI	GGCC	3 cut(s)	56, 204, 540
ApeKI	GCWGC	2 cut(s)	409, 514
ApoI	RAATTY	1 cut(s)	577
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	582
AvaI	CYCGRG	2 cut(s)	278, 518
AvaII	GGWCC	1 cut(s)	533
BaeI	ACNNNNGTAYC	2 cut(s)	633, 666
BanII	GRGCYC	1 cut(s)	625
BarI	GAAGNNNNNNTAC	2 cut(s)	138, 170
BauI	CACGAG	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	756
BbvI	GCAGC	2 cut(s)	396, 526
BccI	CCATC	6 cut(s)	75, 122, 292, 332, 601, 734
BceAI	ACGGC	3 cut(s)	71, 422, 570
BciT130I	CCWGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	485
BglII	AGATCT	1 cut(s)	704
BisI	GCNGC	5 cut(s)	204, 297, 410, 515, 540
BlpI	GCTNAGC	1 cut(s)	634
BlsI	GCNGC	5 cut(s)	205, 298, 411, 516, 541
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	533
BmeT110I	CYCGRG	2 cut(s)	278, 518
BmgBI	CACGTC	2 cut(s)	323, 509
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	4 cut(s)	65, 504, 535, 558
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	2 cut(s)	220, 456
BpiI	GAAGAC	1 cut(s)	756
Bpu10I	CCTNAGC	1 cut(s)	692
Bpu1102I	GCTNAGC	1 cut(s)	634
BpuEI	CTTGAG	2 cut(s)	20, 397
BsaHI	GRCGYC	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	59, 231, 537, 552
Bsc4I	CCNNNNNNNGG	8 cut(s)	37, 168, 272, 489, 496, 530, 542, 697
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	4 cut(s)	59, 231, 537, 552
BseGI	GGATG	4 cut(s)	46, 284, 352, 397
BseLI	CCNNNNNNNGG	8 cut(s)	37, 168, 272, 489, 496, 530, 542, 697
BseMII	CTCAG	2 cut(s)	249, 648
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	540
BseXI	GCAGC	2 cut(s)	396, 526
Bsh1236I	CGCG	1 cut(s)	539
Bsh1285I	CGRYCG	2 cut(s)	334, 543
BshFI	GGCC	3 cut(s)	58, 206, 542
BsiEI	CGRYCG	2 cut(s)	334, 543
BsiHKCI	CYCGRG	2 cut(s)	278, 518
BsiSI	CCGG	2 cut(s)	490, 543
BslFI	GGGAC	3 cut(s)	519, 622, 726
BslI	CCNNNNNNNGG	8 cut(s)	37, 168, 272, 489, 496, 530, 542, 697
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	3 cut(s)	519, 622, 726
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	58, 206, 542
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	278, 518
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	2 cut(s)	224, 704
Bsp1720I	GCTNAGC	1 cut(s)	634
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	7 cut(s)	203, 297, 326, 500, 537, 539, 560
BspANI	GGCC	3 cut(s)	58, 206, 542
BspCNI	CTCAG	2 cut(s)	250, 647
BspFNI	CGCG	1 cut(s)	539
BspLI	GGNNCC	4 cut(s)	65, 504, 535, 558
BspMAI	CTGCAG	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	203
BssECI	CCNNGG	4 cut(s)	59, 231, 537, 552
BssMI	GATC	2 cut(s)	224, 704
BssNI	GRCGYC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	2 cut(s)	232, 332
BstACI	GRCGYC	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	4 cut(s)	258, 634, 692, 754
BstDSI	CCRYGG	4 cut(s)	59, 231, 537, 552
BstENI	CCTNNNNNAGG	2 cut(s)	35, 166
BstF5I	GGATG	4 cut(s)	46, 284, 352, 397
BstFNI	CGCG	1 cut(s)	539
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	2 cut(s)	227, 707
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	224, 704
BstMCI	CGRYCG	2 cut(s)	334, 543
BstMWI	GCNNNNNNNGC	5 cut(s)	372, 486, 511, 520, 568
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	2 cut(s)	385, 575
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	512
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	2 cut(s)	396, 526
BstV2I	GAAGAC	1 cut(s)	756
BstX2I	RGATCY	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	704
BstZI	CGGCCG	1 cut(s)	540
BsuRI	GGCC	3 cut(s)	58, 206, 542
BtgI	CCRYGG	4 cut(s)	59, 231, 537, 552
BtgZI	GCGATG	1 cut(s)	277
BtrI	CACGTC	2 cut(s)	323, 509
BtsCI	GGATG	4 cut(s)	46, 284, 352, 397
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	425
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	533
Cfr42I	CCGCGG	1 cut(s)	540
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	642
CviAII	CATG	7 cut(s)	60, 239, 382, 437, 572, 597, 697
CviQI	GTAC	1 cut(s)	642
DdeI	CTNAG	4 cut(s)	258, 634, 692, 754
DpnI	GATC	2 cut(s)	226, 706
DpnII	GATC	2 cut(s)	224, 704
EaeI	YGGCCR	2 cut(s)	56, 540
EagI	CGGCCG	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	515
EclXI	CGGCCG	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	625
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	533
Eco52I	CGGCCG	1 cut(s)	540
Eco88I	CYCGRG	2 cut(s)	278, 518
EcoNI	CCTNNNNNAGG	2 cut(s)	35, 166
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	7 cut(s)	63, 242, 385, 440, 575, 600, 700
FaqI	GGGAC	3 cut(s)	519, 622, 726
FatI	CATG	7 cut(s)	59, 238, 381, 436, 571, 596, 696
FauI	CCCGC	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	5 cut(s)	204, 297, 410, 515, 540
FokI	GGATG	4 cut(s)	53, 271, 359, 404
FriOI	GRGCYC	1 cut(s)	625
Fsp4HI	GCNGC	5 cut(s)	204, 297, 410, 515, 540
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	5 cut(s)	204, 297, 410, 515, 540
HaeIII	GGCC	3 cut(s)	58, 206, 542
HapII	CCGG	2 cut(s)	490, 543
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	7 cut(s)	63, 242, 385, 440, 575, 600, 700
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HinfI	GANTC	3 cut(s)	254, 276, 687
HpaII	CCGG	2 cut(s)	490, 543
HphI	GGTGA	1 cut(s)	582
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	6 cut(s)	24, 182, 259, 320, 616, 683
Hpy188III	TCNNGA	4 cut(s)	335, 344, 711, 734
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	3 cut(s)	134, 137, 186
HpyAV	CCTTC	4 cut(s)	203, 524, 599, 611
HpyCH4III	ACNGT	2 cut(s)	232, 332
HpyCH4IV	ACGT	2 cut(s)	322, 508
HpyCH4V	TGCA	5 cut(s)	167, 423, 440, 447, 514
HpyF10VI	GCNNNNNNNGC	5 cut(s)	372, 486, 511, 520, 568
HpyF3I	CTNAG	4 cut(s)	258, 634, 692, 754
HpySE526I	ACGT	2 cut(s)	322, 508
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	7 cut(s)	63, 242, 385, 440, 575, 600, 700
HspAI	GCGC	1 cut(s)	366
KspI	CCGCGG	1 cut(s)	540
Kzo9I	GATC	2 cut(s)	224, 704
LmnI	GCTCC	4 cut(s)	502, 562, 568, 661
LpnPI	CCDG	8 cut(s)	193, 220, 490, 503, 556, 624, 643, 672
Lsp1109I	GCAGC	2 cut(s)	396, 526
LweI	GCATC	2 cut(s)	220, 456
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	2 cut(s)	322, 508
MaeIII	GTNAC	1 cut(s)	588
MalI	GATC	2 cut(s)	226, 706
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	2 cut(s)	224, 704
MboII	GAAGA	5 cut(s)	407, 696, 699, 749, 761
MfeI	CAATTG	1 cut(s)	563
MflI	RGATCY	1 cut(s)	704
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	5 cut(s)	18, 217, 418, 563, 577
MlyI	GAGTC	2 cut(s)	263, 270
MmeI	TCCRAC	2 cut(s)	205, 366
MnlI	CCTC	7 cut(s)	41, 44, 188, 382, 490, 660, 753
MslI	CAYNNNNRTG	2 cut(s)	162, 595
MspA1I	CMGCKG	2 cut(s)	539, 638
MspI	CCGG	2 cut(s)	490, 543
MspR9I	CCNGG	1 cut(s)	208
MunI	CAATTG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	5 cut(s)	372, 486, 511, 520, 568
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	224, 704
NlaIII	CATG	7 cut(s)	63, 242, 385, 440, 575, 600, 700
NlaIV	GGNNCC	4 cut(s)	65, 504, 535, 558
NmeAIII	GCCGAG	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	588
NspI	RCATGY	2 cut(s)	385, 575
PaeR7I	CTCGAG	2 cut(s)	278, 518
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	687
PkrI	GCNGC	5 cut(s)	205, 298, 411, 516, 541
PleI	GAGTC	2 cut(s)	262, 270
PpsI	GAGTC	2 cut(s)	262, 270
PpuMI	RGGWCCY	1 cut(s)	533
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	4 cut(s)	65, 504, 535, 558
PspPI	GGNCC	1 cut(s)	533
PspPPI	RGGWCCY	1 cut(s)	533
PspXI	VCTCGAGB	2 cut(s)	278, 518
PstI	CTGCAG	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	704
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	1 cut(s)	643
RsaNI	GTAC	1 cut(s)	642
RseI	CAYNNNNRTG	2 cut(s)	162, 595
SacII	CCGCGG	1 cut(s)	540
SatI	GCNGC	5 cut(s)	204, 297, 410, 515, 540
Sau3AI	GATC	2 cut(s)	224, 704
Sau96I	GGNCC	1 cut(s)	533
SchI	GAGTC	2 cut(s)	263, 270
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	625
SfaNI	GCATC	2 cut(s)	220, 456
SfcI	CTRYAG	1 cut(s)	512
Sfr274I	CTCGAG	2 cut(s)	278, 518
Sfr303I	CCGCGG	1 cut(s)	540
SgrBI	CCGCGG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	533
SlaI	CTCGAG	2 cut(s)	278, 518
SmiMI	CAYNNNNRTG	2 cut(s)	162, 595
SmlI	CTYRAG	4 cut(s)	35, 278, 376, 518
SmoI	CTYRAG	4 cut(s)	35, 278, 376, 518
Sse9I	AATT	5 cut(s)	18, 217, 418, 563, 577
SsiI	CCGC	7 cut(s)	203, 297, 326, 500, 537, 539, 560
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	232, 332
TaiI	ACGT	2 cut(s)	325, 511
TaqI	TCGA	5 cut(s)	279, 334, 450, 519, 665
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	5 cut(s)	18, 217, 418, 563, 577
TauI	GCSGC	3 cut(s)	206, 299, 542
TfiI	GAWTC	1 cut(s)	687
TseFI	GTSAC	1 cut(s)	588
TseI	GCWGC	2 cut(s)	409, 514
Tsp45I	GTSAC	1 cut(s)	588
TspDTI	ATGAA	3 cut(s)	111, 146, 408
TspGWI	ACGGA	3 cut(s)	118, 238, 277
VpaK11BI	GGWCC	1 cut(s)	533
XagI	CCTNNNNNAGG	2 cut(s)	35, 166
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	2 cut(s)	385, 575
XhoI	CTCGAG	2 cut(s)	278, 518
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.