Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015071

Physical Location & Seq

Genomic Coordinates Forward (+)

17640546 .. 17641790

Gene Structure 1245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGCTCCAACGACAGAGATCATCGCAGGTTCAACTCTGACCACCACTCATTCTGGCCTAATCCGTCTACTTACGATCTTAACAGCAAGATCATGCTTGCCGCAGTGGCTTCTTTATCTGGAGTTATCCTCATCGTCTTCGCTCTTCATCTTTACGCAAGATTCGTTCTCCGACGCCGTAGAGAAGCTTTCCGTGGCCTCCCCGTCATTTTCCGCCACCCTTTTGAGATGCCTAAGCGTGGCCTCAATCCCACAGTCATCGCTTCTCTCCCTACTTTCACTGTTGGAGCCACTGATGGCGTGGCTGCCTCCGCTACTGAATGCGCAGTGTGTCTAAGCGTGTTAAAGGAGCAAGACAAGGCGAGAGAGTTGCCCAACTGCAAGCACATCTTCCACGTCGACTGTGTTGACACGTGGCTCACCACTTGCTCCACTTGTCCTGTTTGTCGGACTGAAGTTGAGCCAAGACCGAGACTTGAGCCTGAGCCAAGGGAAGGACCAGTCGGTACTGCACCGCAGTTGTTGGTGGAAACCAGGCTGAACTTGACTGTAGAAGCCGCATCCTCTTCTTCCTCAGATAACAAAACAGTTGTATCCCCGGCTTCGCGATTAAATTCGTTTAGGAAAATCTTGACGAGGGAAAGATCTTCGAACAGGATCAACCATTCTTGTCCTGACCAAGATCGTGTGGCAGATCTTGAGAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

236

Amino Acids

26.44

Weight (kDa)

8.87

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	107 - 150	6e-13	Ring finger domain
zf-RING_11	PF17123	107 - 136	4.4e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	107 - 149	1.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	111 - 150	5.6e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42350 AT2G42360
fragaria_vesca	FvH4_6g27024
malus_domestica	MD09G1240700.v1.1 MD17G1233600.v1.1
prunus_persica	Prupe.3G125000_v2.0.a1
pyrus_communis	pycom09g15940 pycom17g23670
rosa_chinensis	RchiOBHm_Chr2g0128891
rosa_laevigata	RLG00000019039
rosa_rugosa	Rorug02G0282200
rosa_samantha	Rh2AG334800 Rh2BG342800 Rh2CG321800 Rh2DG359400
rosa_wichuraiana	Rw2G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	18
AccI	GTMKAC	2 cut(s)	68, 399
AccII	CGCG	1 cut(s)	607
AciI	CCGC	5 cut(s)	102, 214, 312, 515, 558
AclWI	GGATC	1 cut(s)	665
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	1 cut(s)	474
AcvI	CACGTG	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	508
AfiI	CCNNNNNNNGG	2 cut(s)	239, 494
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	1 cut(s)	34
AjiI	CACGTC	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	533
AluBI	AGCT	2 cut(s)	6, 188
AluI	AGCT	2 cut(s)	6, 188
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	466, 697
AlwI	GGATC	1 cut(s)	665
AoxI	GGCC	3 cut(s)	56, 196, 241
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	497
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	1 cut(s)	412
AsuII	TTCGAA	1 cut(s)	650
AvaII	GGWCC	1 cut(s)	497
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BanII	GRGCYC	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	162
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BciT130I	CCWGG	1 cut(s)	535
BciVI	GTATCC	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	466, 697
BfmI	CTRYAG	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	604
BglI	GCCNNNNNGGC	1 cut(s)	107
BglII	AGATCT	2 cut(s)	644, 694
BisI	GCNGC	3 cut(s)	102, 306, 558
BlsI	GCNGC	3 cut(s)	103, 307, 559
Bme1390I	CCNGG	2 cut(s)	535, 599
Bme18I	GGWCC	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	535, 599
BmsI	GCATC	2 cut(s)	219, 569
BpiI	GAAGAC	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BpmI	CTGGAG	1 cut(s)	141
Bpu10I	CCTNAGC	2 cut(s)	234, 483
Bpu14I	TTCGAA	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	3 cut(s)	193, 488, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 494
Bse1I	ACTGG	1 cut(s)	500
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	3 cut(s)	193, 488, 597
BseGI	GGATG	1 cut(s)	560
BseLI	CCNNNNNNNGG	2 cut(s)	239, 494
BseMII	CTCAG	2 cut(s)	474, 588
BseNI	ACTGG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	607
BshFI	GGCC	3 cut(s)	58, 198, 243
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	599
BslI	CCNNNNNNNGG	2 cut(s)	239, 494
BsmAI	GTCTC	2 cut(s)	466, 697
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	58, 198, 243
Bsp119I	TTCGAA	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	7 cut(s)	19, 76, 90, 644, 657, 682, 694
Bsp68I	TCGCGA	1 cut(s)	607
BspACI	CCGC	5 cut(s)	102, 214, 312, 515, 558
BspANI	GGCC	3 cut(s)	58, 198, 243
BspCNI	CTCAG	2 cut(s)	475, 587
BspFNI	CGCG	1 cut(s)	607
BspLI	GGNNCC	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	665
BspQI	GCTCTTC	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	3 cut(s)	193, 488, 597
BssMI	GATC	7 cut(s)	19, 76, 90, 644, 657, 682, 694
BssNI	GRCGYC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	5 cut(s)	256, 283, 404, 550, 589
Bst6I	CTCTTC	2 cut(s)	150, 571
BstACI	GRCGYC	1 cut(s)	175
BstBAI	YACGTR	1 cut(s)	414
BstBI	TTCGAA	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	99, 383
BstDEI	CTNAG	4 cut(s)	234, 335, 483, 574
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	560
BstFNI	CGCG	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	7 cut(s)	22, 79, 93, 647, 660, 685, 697
BstMAI	GTCTC	2 cut(s)	466, 697
BstMBI	GATC	7 cut(s)	19, 76, 90, 644, 657, 682, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 311
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	2 cut(s)	533, 597
BstSFI	CTRYAG	1 cut(s)	549
BstUI	CGCG	1 cut(s)	607
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	2 cut(s)	644, 694
BstYI	RGATCY	2 cut(s)	644, 694
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	3 cut(s)	58, 198, 243
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	2 cut(s)	8, 244
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	560
BtsI	GCAGTG	2 cut(s)	111, 333
BtsIMutI	CAGTG	4 cut(s)	111, 279, 291, 333
BtuMI	TCGCGA	1 cut(s)	607
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	99, 383
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	497
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	507
CviAII	CATG	1 cut(s)	94
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	4 cut(s)	234, 335, 483, 574
DpnI	GATC	7 cut(s)	21, 78, 92, 646, 659, 684, 696
DpnII	GATC	7 cut(s)	19, 76, 90, 644, 657, 682, 694
Eam1104I	CTCTTC	2 cut(s)	150, 571
EarI	CTCTTC	2 cut(s)	150, 571
EciI	GGCGGA	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	474
Eco72I	CACGTG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	488
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	1 cut(s)	97
FaiI	YATR	1 cut(s)	95
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	1 cut(s)	93
FblI	GTMKAC	2 cut(s)	68, 399
Fnu4HI	GCNGC	3 cut(s)	102, 306, 558
FokI	GGATG	1 cut(s)	547
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	102, 306, 558
FspI	TGCGCA	1 cut(s)	325
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	3 cut(s)	102, 306, 558
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	58, 198, 243
HapII	CCGG	1 cut(s)	599
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	2 cut(s)	400, 409
HindII	GTYRAC	2 cut(s)	400, 409
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	1 cut(s)	162
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	3 cut(s)	69, 400, 409
Hpy188I	TCNGA	4 cut(s)	40, 173, 450, 577
Hpy188III	TCNNGA	5 cut(s)	120, 606, 631, 674, 698
Hpy8I	GTNNAC	3 cut(s)	69, 400, 409
Hpy99I	CGWCG	2 cut(s)	177, 401
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	5 cut(s)	256, 283, 404, 550, 589
HpyCH4IV	ACGT	2 cut(s)	396, 413
HpyCH4V	TGCA	2 cut(s)	381, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 311
HpyF3I	CTNAG	4 cut(s)	234, 335, 483, 574
HpySE526I	ACGT	2 cut(s)	396, 413
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	7 cut(s)	19, 76, 90, 644, 657, 682, 694
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	4 cut(s)	11, 287, 349, 434
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	219, 569
MaeII	ACGT	2 cut(s)	396, 413
MalI	GATC	7 cut(s)	21, 78, 92, 646, 659, 684, 696
MboI	GATC	7 cut(s)	19, 76, 90, 644, 657, 682, 694
MboII	GAAGA	6 cut(s)	130, 137, 382, 558, 561, 639
MflI	RGATCY	2 cut(s)	644, 694
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	613
MmeI	TCCRAC	4 cut(s)	33, 196, 265, 428
MnlI	CCTC	7 cut(s)	140, 209, 254, 319, 574, 583, 630
MseI	TTAA	3 cut(s)	81, 344, 611
MspI	CCGG	1 cut(s)	599
MspR9I	CCNGG	2 cut(s)	535, 599
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	1 cut(s)	607
MwoI	GCNNNNNNNGC	2 cut(s)	107, 311
NciI	CCSGG	1 cut(s)	599
NdeII	GATC	7 cut(s)	19, 76, 90, 644, 657, 682, 694
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	1 cut(s)	289
NruI	TCGCGA	1 cut(s)	607
NsbI	TGCGCA	1 cut(s)	325
NspV	TTCGAA	1 cut(s)	650
PciSI	GCTCTTC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	162
PkrI	GCNGC	3 cut(s)	103, 307, 559
PmaCI	CACGTG	1 cut(s)	414
PmlI	CACGTG	1 cut(s)	414
Ppu21I	YACGTR	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	533
PspCI	CACGTG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	644, 694
RruI	TCGCGA	1 cut(s)	607
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	81, 344, 611
SatI	GCNGC	3 cut(s)	102, 306, 558
Sau3AI	GATC	7 cut(s)	19, 76, 90, 644, 657, 682, 694
Sau96I	GGNCC	1 cut(s)	497
ScrFI	CCNGG	2 cut(s)	535, 599
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	8, 32, 190, 399, 416
SfaNI	GCATC	2 cut(s)	219, 569
SfcI	CTRYAG	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	650
SinI	GGWCC	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	476, 698
SmoI	CTYRAG	2 cut(s)	476, 698
Sse9I	AATT	1 cut(s)	613
SsiI	CCGC	5 cut(s)	102, 214, 312, 515, 558
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	533, 597
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	5 cut(s)	256, 283, 404, 550, 589
TaiI	ACGT	2 cut(s)	399, 416
TaqI	TCGA	2 cut(s)	399, 650
TaqII	GACCGA	1 cut(s)	484
TasI	AATT	1 cut(s)	613
TauI	GCSGC	2 cut(s)	104, 560
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	3 cut(s)	81, 344, 611
Tru9I	TTAA	3 cut(s)	81, 344, 611
TscAI	CASTG	4 cut(s)	111, 286, 298, 333
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	2 cut(s)	54, 182
TspRI	CASTG	4 cut(s)	111, 286, 298, 333
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmiI	GTMKAC	2 cut(s)	68, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.