Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0015071

Physical Location & Seq

Genomic Coordinates Forward (+)

28221868 .. 28222635

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1233600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCTTTCTTGTCTCCTACAATTCCGATGCGCCTCCTCGAGGATGACGAGGCCGATCTGTCATTCTTCCCTCACAAAAACTCGAACAACTTGAACAGCAAGATCATGGTCATATCCATCATTTCATTATCCATCGTTGTTTTGCTAGTAATCTTGCTTCATACCTACGCAAGGTGTGTCCTCCGACGCCAGGTGCTTCGCCGAGCGTCCATACGTCGTCATTTGGGGTCAACCATGGCTCATGTCCACTCCGTTGAGCTGCCCAAAATTGGACTCGAGCCCTCCGTCATTGCCGCCTTGCCCATGTTCGTGTTCAGACGTGCGGAGGGCCGAGATGGCGGGGATGACAACGCAATAGAGTGCGCTGTGTGTTTGAGCATGTTAGAGAATGAAGAAATGGCACGGTTGCTTCCAAATTGCAAGCACAGTTTCCATGCAGAGTGCATCGACAAGTGGCTGATTTCCCATACTACCTGCCCCATTTGCCGGACAGAGGCGAAGCCGTGTCTGCATCTCGAGCCACGAGAGGGTCCCGCAGCCGGGATGCCAACGGCTCCGCCGTTAGAGCATGTGAACTCTGTGTTGTCATCATCATGTATGGAAGGGACATCAGATGGTGCTCAATCCAGCTCAGCTGGTACTAAAGTGAATGCTTCATCGGTTTCCAGGTTGAGTTCTTTCAGAAGAATGATTAGTAGGGACAGATCTTCAAGACGTATTCAATCTTGCGGACAAGAGGATGGTATAGAAGATTTAGAGAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

256

Amino Acids

28.19

Weight (kDa)

7.13

Isoelectric Point (pI)

67.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	120 - 163	2.5e-13	Ring finger domain
zf-C3HC4_2	PF13923	120 - 162	1e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	120 - 149	1.2e-09	RING-like zinc finger
zf-RING_5	PF14634	120 - 164	1.7e-06	zinc-RING finger domain
zf-C3HC4	PF00097	121 - 162	1e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	124 - 163	4e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42350 AT2G42360
fragaria_vesca	FvH4_6g27024
malus_domestica	MD09G1240700.v1.1 MD17G1233600.v1.1
prunus_persica	Prupe.3G125000_v2.0.a1
pyrus_communis	pycom09g15940 pycom17g23670
rosa_chinensis	RchiOBHm_Chr2g0128891
rosa_laevigata	RLG00000019039
rosa_rugosa	Rorug02G0282200
rosa_samantha	Rh2AG334800 Rh2BG342800 Rh2CG321800 Rh2DG359400
rosa_wichuraiana	Rw2G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	482
AciI	CCGC	6 cut(s)	294, 323, 339, 534, 557, 729
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	9 cut(s)	40, 171, 190, 269, 486, 493, 527, 539, 540
AgsI	TTSAA	3 cut(s)	94, 711, 722
AjiI	CACGTC	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	189, 665
AluBI	AGCT	3 cut(s)	259, 630, 635
AluI	AGCT	3 cut(s)	259, 630, 635
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	1 cut(s)	18
Ama87I	CYCGRG	3 cut(s)	38, 275, 515
AoxI	GGCC	2 cut(s)	51, 328
ApeKI	GCWGC	2 cut(s)	259, 536
AspLEI	GCGC	2 cut(s)	33, 365
AspS9I	GGNCC	2 cut(s)	328, 530
AsuC2I	CCSGG	1 cut(s)	541
AvaI	CYCGRG	3 cut(s)	38, 275, 515
AvaII	GGWCC	1 cut(s)	530
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BanII	GRGCYC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	141, 173
BauI	CACGAG	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	2 cut(s)	246, 548
BccI	CCATC	5 cut(s)	125, 140, 329, 608, 734
BceAI	ACGGC	3 cut(s)	487, 544, 567
BciT130I	CCWGG	2 cut(s)	191, 667
BcnI	CCSGG	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	482
BglI	GCCNNNNNGGC	1 cut(s)	336
BglII	AGATCT	1 cut(s)	704
BisI	GCNGC	3 cut(s)	260, 294, 537
BlpI	GCTNAGC	1 cut(s)	631
BlsI	GCNGC	3 cut(s)	261, 295, 538
Bme1390I	CCNGG	3 cut(s)	191, 541, 667
Bme18I	GGWCC	1 cut(s)	530
BmeT110I	CYCGRG	3 cut(s)	38, 275, 515
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	328, 530
BmiI	GGNNCC	3 cut(s)	531, 532, 555
BmrFI	CCNGG	3 cut(s)	191, 541, 667
BmsI	GCATC	4 cut(s)	18, 453, 520, 534
Bpu1102I	GCTNAGC	1 cut(s)	631
BpuMI	CCSGG	1 cut(s)	541
BsaHI	GRCGYC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	9 cut(s)	40, 171, 190, 269, 486, 493, 527, 539, 540
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	191, 667
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	4 cut(s)	49, 349, 549, 745
BseLI	CCNNNNNNNGG	9 cut(s)	40, 171, 190, 269, 486, 493, 527, 539, 540
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	645
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	246, 548
BshFI	GGCC	2 cut(s)	53, 330
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	3 cut(s)	38, 275, 515
BsiSI	CCGG	2 cut(s)	487, 540
BslFI	GGGAC	3 cut(s)	516, 619, 713
BslI	CCNNNNNNNGG	9 cut(s)	40, 171, 190, 269, 486, 493, 527, 539, 540
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	3 cut(s)	516, 619, 713
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	2 cut(s)	53, 330
BsoBI	CYCGRG	3 cut(s)	38, 275, 515
Bsp1286I	GDGCHC	2 cut(s)	282, 622
Bsp143I	GATC	3 cut(s)	55, 102, 704
Bsp1720I	GCTNAGC	1 cut(s)	631
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	6 cut(s)	294, 323, 339, 534, 557, 729
BspANI	GGCC	2 cut(s)	53, 330
BspCNI	CTCAG	1 cut(s)	644
BspLI	GGNNCC	3 cut(s)	531, 532, 555
BspMI	ACCTGC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	3 cut(s)	55, 102, 704
BssNI	GRCGYC	1 cut(s)	187
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	191, 667
Bst4CI	ACNGT	2 cut(s)	405, 428
BstACI	GRCGYC	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	631
BstDSI	CCRYGG	1 cut(s)	234
BstENI	CCTNNNNNAGG	2 cut(s)	38, 169
BstF5I	GGATG	4 cut(s)	49, 349, 549, 745
BstHHI	GCGC	2 cut(s)	33, 365
BstKTI	GATC	3 cut(s)	58, 105, 707
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	55, 102, 704
BstMWI	GCNNNNNNNGC	5 cut(s)	336, 483, 508, 517, 565
BstNI	CCWGG	2 cut(s)	191, 667
BstNSI	RCATGY	2 cut(s)	382, 572
BstSCI	CCNGG	3 cut(s)	189, 539, 665
BstV1I	GCAGC	2 cut(s)	246, 548
BstX2I	RGATCY	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	704
BsuRI	GGCC	2 cut(s)	53, 330
BtgI	CCRYGG	1 cut(s)	234
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	4 cut(s)	49, 349, 549, 745
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	1 cut(s)	422
CfoI	GCGC	2 cut(s)	33, 365
Cfr13I	GGNCC	2 cut(s)	328, 530
CseI	GACGC	2 cut(s)	195, 195
Csp6I	GTAC	1 cut(s)	639
CviAII	CATG	8 cut(s)	106, 235, 242, 304, 379, 434, 569, 594
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	1 cut(s)	631
DpnI	GATC	3 cut(s)	57, 104, 706
DpnII	GATC	3 cut(s)	55, 102, 704
EciI	GGCGGA	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	530
Eco88I	CYCGRG	3 cut(s)	38, 275, 515
EcoNI	CCTNNNNNAGG	2 cut(s)	38, 169
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	189, 665
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	8 cut(s)	109, 238, 245, 307, 382, 437, 572, 597
FaqI	GGGAC	3 cut(s)	516, 619, 713
FatI	CATG	8 cut(s)	105, 234, 241, 303, 378, 433, 568, 593
FauI	CCCGC	2 cut(s)	332, 541
Fnu4HI	GCNGC	3 cut(s)	260, 294, 537
FokI	GGATG	4 cut(s)	56, 356, 556, 752
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	3 cut(s)	260, 294, 537
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	2 cut(s)	32, 364
GluI	GCNGC	3 cut(s)	260, 294, 537
HaeIII	GGCC	2 cut(s)	53, 330
HapII	CCGG	2 cut(s)	487, 540
HgaI	GACGC	2 cut(s)	195, 195
HhaI	GCGC	2 cut(s)	33, 365
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	8 cut(s)	109, 238, 245, 307, 382, 437, 572, 597
Hin6I	GCGC	2 cut(s)	31, 363
HinP1I	GCGC	2 cut(s)	31, 363
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	2 cut(s)	487, 540
Hpy166II	GTNNAC	3 cut(s)	231, 247, 574
Hpy188I	TCNGA	5 cut(s)	27, 185, 317, 613, 683
Hpy188III	TCNNGA	2 cut(s)	515, 711
Hpy8I	GTNNAC	3 cut(s)	231, 247, 574
Hpy99I	CGWCG	2 cut(s)	189, 219
HpyAV	CCTTC	1 cut(s)	596
HpyCH4III	ACNGT	2 cut(s)	405, 428
HpyCH4IV	ACGT	3 cut(s)	214, 319, 715
HpyCH4V	TGCA	4 cut(s)	420, 437, 444, 511
HpyF10VI	GCNNNNNNNGC	5 cut(s)	336, 483, 508, 517, 565
HpyF3I	CTNAG	1 cut(s)	631
HpySE526I	ACGT	3 cut(s)	214, 319, 715
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	8 cut(s)	109, 238, 245, 307, 382, 437, 572, 597
HspAI	GCGC	2 cut(s)	31, 363
KflI	GGGWCCC	1 cut(s)	530
Kzo9I	GATC	3 cut(s)	55, 102, 704
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	9 cut(s)	176, 203, 487, 500, 553, 621, 640, 652, 679
Lsp1109I	GCAGC	2 cut(s)	246, 548
LweI	GCATC	4 cut(s)	18, 453, 520, 534
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	3 cut(s)	214, 319, 715
MalI	GATC	3 cut(s)	57, 104, 706
MboI	GATC	3 cut(s)	55, 102, 704
MboII	GAAGA	5 cut(s)	58, 404, 696, 699, 761
MflI	RGATCY	1 cut(s)	704
MhlI	GDGCHC	2 cut(s)	282, 622
MluCI	AATT	3 cut(s)	21, 267, 415
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	208
MslI	CAYNNNNRTG	2 cut(s)	308, 592
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	2 cut(s)	487, 540
MspR9I	CCNGG	3 cut(s)	191, 541, 667
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	2 cut(s)	191, 667
MwoI	GCNNNNNNNGC	5 cut(s)	336, 483, 508, 517, 565
NciI	CCSGG	1 cut(s)	541
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	3 cut(s)	55, 102, 704
NlaIII	CATG	8 cut(s)	109, 238, 245, 307, 382, 437, 572, 597
NlaIV	GGNNCC	3 cut(s)	531, 532, 555
NmeAIII	GCCGAG	2 cut(s)	227, 356
NspI	RCATGY	2 cut(s)	382, 572
PaeR7I	CTCGAG	3 cut(s)	38, 275, 515
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 282, 557
PctI	GAATGC	1 cut(s)	655
PkrI	GCNGC	3 cut(s)	261, 295, 538
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	2 cut(s)	189, 665
PspGI	CCWGG	2 cut(s)	189, 665
PspN4I	GGNNCC	3 cut(s)	531, 532, 555
PspPI	GGNCC	2 cut(s)	328, 530
PspPPI	RGGWCCY	1 cut(s)	530
PspXI	VCTCGAGB	2 cut(s)	38, 275
PsuI	RGATCY	1 cut(s)	704
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
RseI	CAYNNNNRTG	2 cut(s)	308, 592
SatI	GCNGC	3 cut(s)	260, 294, 537
Sau3AI	GATC	3 cut(s)	55, 102, 704
Sau96I	GGNCC	2 cut(s)	328, 530
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	3 cut(s)	191, 541, 667
SduI	GDGCHC	2 cut(s)	282, 622
SfaNI	GCATC	4 cut(s)	18, 453, 520, 534
Sfr274I	CTCGAG	3 cut(s)	38, 275, 515
SinI	GGWCC	1 cut(s)	530
SlaI	CTCGAG	3 cut(s)	38, 275, 515
SmiMI	CAYNNNNRTG	2 cut(s)	308, 592
SmlI	CTYRAG	3 cut(s)	38, 275, 515
SmoI	CTYRAG	3 cut(s)	38, 275, 515
Sse9I	AATT	3 cut(s)	21, 267, 415
SsiI	CCGC	6 cut(s)	294, 323, 339, 534, 557, 729
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	3 cut(s)	189, 539, 665
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	405, 428
TaiI	ACGT	3 cut(s)	217, 322, 718
TaqI	TCGA	5 cut(s)	39, 83, 276, 447, 516
TasI	AATT	3 cut(s)	21, 267, 415
TauI	GCSGC	1 cut(s)	296
TseI	GCWGC	2 cut(s)	259, 536
TspDTI	ATGAA	4 cut(s)	114, 149, 405, 645
TspGWI	ACGGA	2 cut(s)	241, 274
VpaK11BI	GGWCC	1 cut(s)	530
XagI	CCTNNNNNAGG	2 cut(s)	38, 169
XceI	RCATGY	2 cut(s)	382, 572
XhoI	CTCGAG	3 cut(s)	38, 275, 515
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.