Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015071

Physical Location & Seq

Genomic Coordinates Reverse (-)

50587692 .. 50589152

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG359400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCTTCTTCCTCTCACACAGATCCGATCATGCGCCTTCTCAACGAAATCGATGAAATTTCGAAGCCGTTCCCTTCTCATGATAAAGACCCGTATGACTTGAACAGCAAGATCATGCTCATCGCCATCATTGCATTATCCGTCGTGGTTGTGCTGGTAGTACTCCTTCACACCTACGCAAGATGCGTCCTCAGACGCCAGTCTCTTCAGCGAGCTGCCGCCTTACGCCGCCTGGGTTCGACTGTGGCCCATGTCCACTCTTCCGCCGAGCCACCCAAGACCGGCCTCGAGCCCTCCGTCATCGCCGCCTTGCCCGTCTTCGTATACAAGCGCGTGGAGGGTGAGGGACGTCATGAGGGCGATGCTGATGTCGAGTGTGCCGTGTGTCTGAGCATGTTGGAGGATGAAGAAATGGCGAGGTTGCTTCCCAATTGTAAGCACAGCTTCCATGCACAATGCATAGACACGTGGCTGAATTCTCACACCACTTGCCCTATCTGCCGGACGGAGGCGGAGCCCCGTATGGCTCTCCAGCCGGAGCGACGGGAGGGTCCTGTGGCCGGCGCAGCAGCCACGGCCCCACCGTTGGAGCGGGTGAACTCCGTCTTGTCATGTGCGGAAGAGACATCGGAAGACGGTAAAGCAATAAATAGTGGTTCCATTTCGAGGTTGAGTAGTTCTTTCAGAAGAATGCTTAGTAGAGAAAGATCTTCCAGAAGGGTTCAATCATATGGTCAAGAAGATGGTTTTGAAGATTTAGAGAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

256

Amino Acids

28.32

Weight (kDa)

6.01

Isoelectric Point (pI)

65.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	125 - 168	3e-13	Ring finger domain
zf-C3HC4_2	PF13923	125 - 167	3.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	125 - 154	8.6e-10	RING-like zinc finger
zf-RING_5	PF14634	125 - 169	6e-06	zinc-RING finger domain
zf-rbx1	PF12678	126 - 168	5e-10	RING-H2 zinc finger domain
zf-C3HC4	PF00097	126 - 167	1.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	139 - 170	4.1e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42350 AT2G42360
fragaria_vesca	FvH4_6g27024
malus_domestica	MD09G1240700.v1.1 MD17G1233600.v1.1
prunus_persica	Prupe.3G125000_v2.0.a1
pyrus_communis	pycom09g15940 pycom17g23670
rosa_chinensis	RchiOBHm_Chr2g0128891
rosa_laevigata	RLG00000019039
rosa_rugosa	Rorug02G0282200
rosa_samantha	Rh2AG334800 Rh2BG342800 Rh2CG321800 Rh2DG359400
rosa_wichuraiana	Rw2G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	549
AatII	GACGTC	1 cut(s)	352
AccBSI	CCGCTC	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	1 cut(s)	333
AciI	CCGC	7 cut(s)	219, 229, 264, 306, 512, 592, 617
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	2 cut(s)	57, 475
AcuI	CTGAAG	1 cut(s)	191
AcvI	CACGTG	1 cut(s)	468
AcyI	GRCGYC	2 cut(s)	196, 349
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	5 cut(s)	281, 508, 560, 586, 666
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	103, 725, 752
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	2 cut(s)	215, 444
AluI	AGCT	2 cut(s)	215, 444
Alw26I	GTCTC	3 cut(s)	207, 617, 757
AlwI	GGATC	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	4 cut(s)	246, 283, 558, 576
ApeKI	GCWGC	3 cut(s)	215, 566, 569
ApoI	RAATTY	2 cut(s)	57, 475
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	3 cut(s)	36, 333, 566
AspS9I	GGNCC	3 cut(s)	247, 551, 577
AsuHPI	GGTGA	2 cut(s)	353, 607
AsuII	TTCGAA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	551
BanII	GRGCYC	2 cut(s)	294, 519
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BbrPI	CACGTG	1 cut(s)	468
BbsI	GAAGAC	2 cut(s)	310, 639
BbvI	GCAGC	3 cut(s)	202, 578, 581
BccI	CCATC	2 cut(s)	134, 737
BceAI	ACGGC	3 cut(s)	52, 365, 591
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	3 cut(s)	207, 617, 757
BglII	AGATCT	1 cut(s)	707
BisI	GCNGC	6 cut(s)	216, 219, 229, 306, 567, 570
BlsI	GCNGC	6 cut(s)	217, 220, 230, 307, 568, 571
BmcAI	AGTACT	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	3 cut(s)	247, 551, 577
BmiI	GGNNCC	4 cut(s)	516, 552, 579, 658
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	173, 352
BoxI	GACNNNNGTC	1 cut(s)	199
BpiI	GAAGAC	2 cut(s)	310, 639
BpmI	CTGGAG	1 cut(s)	515
Bpu14I	TTCGAA	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	468
BsaHI	GRCGYC	2 cut(s)	196, 349
BsaJI	CCNNGG	2 cut(s)	232, 573
Bsc4I	CCNNNNNNNGG	5 cut(s)	281, 508, 560, 586, 666
Bse118I	RCCGGY	2 cut(s)	281, 560
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	233
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	232, 573
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	5 cut(s)	281, 508, 560, 586, 666
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	205, 380
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	3 cut(s)	202, 578, 581
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	4 cut(s)	248, 285, 560, 578
BshVI	ATCGAT	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	4 cut(s)	282, 502, 536, 561
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	5 cut(s)	281, 508, 560, 586, 666
BsmAI	GTCTC	3 cut(s)	207, 617, 757
BsmFI	GGGAC	1 cut(s)	360
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	4 cut(s)	248, 285, 560, 578
BsoBI	CYCGRG	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	294, 519
Bsp143I	GATC	4 cut(s)	22, 27, 111, 707
BspACI	CCGC	7 cut(s)	219, 229, 264, 306, 512, 592, 617
BspANI	GGCC	4 cut(s)	248, 285, 560, 578
BspCNI	CTCAG	2 cut(s)	204, 381
BspDI	ATCGAT	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	333
BspHI	TCATGA	2 cut(s)	79, 352
BspLI	GGNNCC	4 cut(s)	516, 552, 579, 658
BspPI	GGATC	1 cut(s)	17
BspT104I	TTCGAA	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	592
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	2 cut(s)	281, 560
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	2 cut(s)	281, 560
BssECI	CCNNGG	2 cut(s)	232, 573
BssMI	GATC	4 cut(s)	22, 27, 111, 707
BssNAI	GTATAC	1 cut(s)	325
BssNI	GRCGYC	2 cut(s)	196, 349
Bst1107I	GTATAC	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	4 cut(s)	244, 585, 638, 768
Bst6I	CTCTTC	3 cut(s)	210, 265, 615
BstACI	GRCGYC	2 cut(s)	196, 349
BstBAI	YACGTR	1 cut(s)	468
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	213, 562
BstDEI	CTNAG	3 cut(s)	191, 389, 695
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	3 cut(s)	36, 333, 566
BstKTI	GATC	4 cut(s)	25, 30, 114, 710
BstMAI	GTCTC	3 cut(s)	207, 617, 757
BstMBI	GATC	4 cut(s)	22, 27, 111, 707
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 498, 566, 575
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	397
BstPAI	GACNNNNGTC	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	202, 578, 581
BstV2I	GAAGAC	2 cut(s)	310, 639
BstX2I	RGATCY	2 cut(s)	22, 707
BstYI	RGATCY	2 cut(s)	22, 707
BstZ17I	GTATAC	1 cut(s)	325
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	4 cut(s)	248, 285, 560, 578
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	573
BtgZI	GCGATG	3 cut(s)	106, 286, 375
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	213, 562
CciI	TCATGA	2 cut(s)	79, 352
CfoI	GCGC	3 cut(s)	36, 333, 566
Cfr10I	RCCGGY	2 cut(s)	281, 560
Cfr13I	GGNCC	3 cut(s)	247, 551, 577
ClaI	ATCGAT	1 cut(s)	51
CseI	GACGC	2 cut(s)	175, 204
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	8 cut(s)	31, 80, 115, 251, 353, 394, 449, 612
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	3 cut(s)	191, 389, 695
DpnI	GATC	4 cut(s)	24, 29, 113, 709
DpnII	GATC	4 cut(s)	22, 27, 111, 707
DrdI	GACNNNNNNGTC	1 cut(s)	549
DseDI	GACNNNNNNGTC	1 cut(s)	549
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	3 cut(s)	210, 265, 615
EarI	CTCTTC	3 cut(s)	210, 265, 615
EciI	GGCGGA	2 cut(s)	253, 527
Eco24I	GRGCYC	2 cut(s)	294, 519
Eco47I	GGWCC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	191
Eco72I	CACGTG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	461
EcoT38I	GRGCYC	2 cut(s)	294, 519
FaeI	CATG	8 cut(s)	34, 83, 118, 254, 356, 397, 452, 615
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	8 cut(s)	30, 79, 114, 250, 352, 393, 448, 611
FauI	CCCGC	1 cut(s)	585
FauNDI	CATATG	1 cut(s)	730
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	6 cut(s)	216, 219, 229, 306, 567, 570
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	2 cut(s)	294, 519
Fsp4HI	GCNGC	6 cut(s)	216, 219, 229, 306, 567, 570
GlaI	GCGC	3 cut(s)	35, 332, 565
GluI	GCNGC	6 cut(s)	216, 219, 229, 306, 567, 570
GsuI	CTGGAG	1 cut(s)	515
HaeIII	GGCC	4 cut(s)	248, 285, 560, 578
HapII	CCGG	4 cut(s)	282, 502, 536, 561
HgaI	GACGC	2 cut(s)	175, 204
HhaI	GCGC	3 cut(s)	36, 333, 566
Hin1I	GRCGYC	2 cut(s)	196, 349
Hin1II	CATG	8 cut(s)	34, 83, 118, 254, 356, 397, 452, 615
Hin6I	GCGC	3 cut(s)	34, 331, 564
HinP1I	GCGC	3 cut(s)	34, 331, 564
HpaII	CCGG	4 cut(s)	282, 502, 536, 561
HphI	GGTGA	2 cut(s)	353, 607
Hpy166II	GTNNAC	3 cut(s)	256, 325, 598
Hpy188I	TCNGA	5 cut(s)	27, 194, 390, 631, 686
Hpy188III	TCNNGA	4 cut(s)	80, 353, 714, 737
Hpy8I	GTNNAC	3 cut(s)	256, 325, 598
Hpy99I	CGWCG	2 cut(s)	146, 546
HpyAV	CCTTC	4 cut(s)	47, 84, 176, 711
HpyCH4III	ACNGT	4 cut(s)	244, 585, 638, 768
HpyCH4IV	ACGT	2 cut(s)	349, 467
HpyCH4V	TGCA	3 cut(s)	134, 452, 459
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 498, 566, 575
HpyF3I	CTNAG	3 cut(s)	191, 389, 695
HpySE526I	ACGT	2 cut(s)	349, 467
Hsp92I	GRCGYC	2 cut(s)	196, 349
Hsp92II	CATG	8 cut(s)	34, 83, 118, 254, 356, 397, 452, 615
HspAI	GCGC	3 cut(s)	34, 331, 564
KroI	GCCGGC	1 cut(s)	560
KroNI	GCCGGC	1 cut(s)	562
Kzo9I	GATC	4 cut(s)	22, 27, 111, 707
LmnI	GCTCC	3 cut(s)	514, 538, 589
Lsp1109I	GCAGC	3 cut(s)	202, 578, 581
LweI	GCATC	2 cut(s)	173, 352
MaeII	ACGT	2 cut(s)	349, 467
MalI	GATC	4 cut(s)	24, 29, 113, 709
MbiI	CCGCTC	1 cut(s)	592
MboI	GATC	4 cut(s)	22, 27, 111, 707
MfeI	CAATTG	1 cut(s)	430
MflI	RGATCY	2 cut(s)	22, 707
MhlI	GDGCHC	2 cut(s)	294, 519
MluCI	AATT	3 cut(s)	57, 430, 475
MmeI	TCCRAC	2 cut(s)	378, 567
Mph1103I	ATGCAT	1 cut(s)	461
MroNI	GCCGGC	1 cut(s)	560
MroXI	GAANNNNTTC	1 cut(s)	68
MspI	CCGG	4 cut(s)	282, 502, 536, 561
MspR9I	CCNGG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	4 cut(s)	131, 498, 566, 575
NaeI	GCCGGC	1 cut(s)	562
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	4 cut(s)	22, 27, 111, 707
NgoMIV	GCCGGC	1 cut(s)	560
NlaIII	CATG	8 cut(s)	34, 83, 118, 254, 356, 397, 452, 615
NlaIV	GGNNCC	4 cut(s)	516, 552, 579, 658
NmeAIII	GCCGAG	1 cut(s)	292
NsiI	ATGCAT	1 cut(s)	461
NspI	RCATGY	1 cut(s)	397
NspV	TTCGAA	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	287
PagI	TCATGA	2 cut(s)	79, 352
PcsI	WCGNNNNNNNCGW	4 cut(s)	183, 294, 378, 581
PctI	GAATGC	1 cut(s)	696
PdiI	GCCGGC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	68
PkrI	GCNGC	6 cut(s)	217, 220, 230, 307, 568, 571
PmaCI	CACGTG	1 cut(s)	468
PmlI	CACGTG	1 cut(s)	468
Ppu21I	YACGTR	1 cut(s)	468
PpuMI	RGGWCCY	1 cut(s)	551
PshAI	GACNNNNGTC	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	231
PspCI	CACGTG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	4 cut(s)	516, 552, 579, 658
PspPI	GGNCC	3 cut(s)	247, 551, 577
PspPPI	RGGWCCY	1 cut(s)	551
PspXI	VCTCGAGB	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	22, 707
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SatI	GCNGC	6 cut(s)	216, 219, 229, 306, 567, 570
Sau3AI	GATC	4 cut(s)	22, 27, 111, 707
Sau96I	GGNCC	3 cut(s)	247, 551, 577
ScaI	AGTACT	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	294, 519
SetI	ASST	7 cut(s)	176, 217, 352, 422, 446, 470, 671
SfaNI	GCATC	2 cut(s)	173, 352
Sfr274I	CTCGAG	1 cut(s)	287
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	3 cut(s)	57, 430, 475
SsiI	CCGC	7 cut(s)	219, 229, 264, 306, 512, 592, 617
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	4 cut(s)	244, 585, 638, 768
TaiI	ACGT	2 cut(s)	352, 470
TaqI	TCGA	6 cut(s)	51, 62, 239, 288, 372, 665
TasI	AATT	3 cut(s)	57, 430, 475
TatI	WGTACW	1 cut(s)	160
TauI	GCSGC	3 cut(s)	221, 231, 308
TseI	GCWGC	3 cut(s)	215, 566, 569
TspDTI	ATGAA	2 cut(s)	69, 420
TspGWI	ACGGA	4 cut(s)	130, 286, 521, 592
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	2 cut(s)	57, 475
XceI	RCATGY	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	68
ZraI	GACGTC	1 cut(s)	350
ZrmI	AGTACT	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.