Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005960

Physical Location & Seq

Genomic Coordinates Forward (+)

17820114 .. 17824013

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGGGTGGTGCGAGTAATGAAGTAGCAGAGAGCAGCAAGAAGATAGGGAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACTACGAATCGTCAAGTCACTTTCTGCAAACGACGCAATGGTTTACTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGACGCTGAGGTTGCTCTTGTCATCTTCTCCACTCGAGGCCGTCTCTACGAGTACGCCAACAACAGTGTGAGAGGAACAATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGACCATCACCGAAGCTAATACTCAGTACTATCAGCAAGAGGCGTCTAAACTCCGGAGACAGATTCGGGACATTCAGAATTTGAACAGACACATTCTTGGTGAATCTCTTGGTTCCTTGAACTTTAAGGAACTCAAGAACCTTGAAAGTAGGCTTGAGAAAGGAATCAGTCGTGTCCGATCCAAGAAGCACGAGATGTTAGTTGCAGAGATTGAATACATGCAAAAAAGGGAAATCGAGCTGCAAAACGATAACATGTATCTCCGCTCCAAGATTACTGAAAGAACAGGTCTACAGCAACAAGAATCGAGTGTGATACATCAAGGGACAGTTTACGAGTCGGGTGTTACTTCTTCTCACCAGTCGGGGCAGTATAACCGGAATTATATTGCGGTTAACCTTCTTGAACCGAATCAGAATTCCTCCAACCAAGACCAACCACCTCTGCAACTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

246

Amino Acids

28.16

Weight (kDa)

9.33

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	25 - 72	4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	100 - 186	2.6e-27	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42830 AT2G42830 AT3G58780 AT3G58780 AT3G58780 AT3G58780 AT3G58780
fragaria_vesca	FvH4_6g37880 FvH4_6g37880 FvH4_6g37880
malus_domestica	MD09G1155200.v1.1 MD17G1141300.v1.1
prunus_persica	Prupe.3G170600_v2.0.a1
pyrus_communis	pycom09g07400 pycom17g13470
rosa_chinensis	RchiOBHm_Chr2g0151031
rosa_laevigata	RLG00000020525
rosa_multiflora	Rmu_sc0000185.1_g000040
rosa_roxburghii	Rroxscaffold_2G00096750
rosa_rugosa	Rorug02G0423600 Rorug02G0423600 Rorug02G0423700 Rorug02G0423800 Rorug02G0423900 Rorug02G0424000
rosa_samantha	Rh2CG470800
rosa_wichuraiana	Rw2G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	574
AccIII	TCCGGA	1 cut(s)	336
AciI	CCGC	2 cut(s)	547, 674
AclWI	GGATC	1 cut(s)	456
AcsI	RAATTY	2 cut(s)	361, 700
AcyI	GRCGYC	2 cut(s)	270, 326
AfaI	GTAC	3 cut(s)	215, 251, 311
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	5 cut(s)	367, 403, 428, 497, 689
AluBI	AGCT	5 cut(s)	140, 148, 260, 299, 523
AluI	AGCT	5 cut(s)	140, 148, 260, 299, 523
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	2 cut(s)	209, 334
AlwI	GGATC	1 cut(s)	456
Ama87I	CYCGRG	1 cut(s)	195
Aor13HI	TCCGGA	1 cut(s)	336
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	36, 523
ApoI	RAATTY	2 cut(s)	361, 700
AsuHPI	GGTGA	3 cut(s)	283, 395, 632
AvaI	CYCGRG	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	150
BauI	CACGAG	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	150
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	48, 510
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	2 cut(s)	186, 257
BcoDI	GTCTC	2 cut(s)	209, 334
BfmI	CTRYAG	1 cut(s)	575
BisI	GCNGC	2 cut(s)	37, 524
BlsI	GCNGC	2 cut(s)	38, 525
BmcAI	AGTACT	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	397
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	3 cut(s)	116, 401, 458
BsaHI	GRCGYC	2 cut(s)	270, 326
BsaWI	WCCGGW	2 cut(s)	336, 660
Bse1I	ACTGG	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	127
BseAI	TCCGGA	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	159, 320
BseNI	ACTGG	1 cut(s)	643
BseXI	GCAGC	2 cut(s)	48, 510
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	337, 661
BslFI	GGGAC	2 cut(s)	365, 622
BsmAI	GTCTC	2 cut(s)	209, 334
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	2 cut(s)	365, 622
BsnI	GGCC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp13I	TCCGGA	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	461
BspACI	CCGC	2 cut(s)	547, 674
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	160, 319
BspEI	TCCGGA	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	397
BspPI	GGATC	1 cut(s)	456
BsrBI	CCGCTC	1 cut(s)	549
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	643
BssMI	GATC	1 cut(s)	461
BssNI	GRCGYC	2 cut(s)	270, 326
BssSI	CACGAG	1 cut(s)	473
Bst2BI	CACGAG	1 cut(s)	473
Bst4CI	ACNGT	2 cut(s)	227, 613
BstACI	GRCGYC	2 cut(s)	270, 326
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	168, 306
BstKTI	GATC	1 cut(s)	464
BstMAI	GTCTC	2 cut(s)	209, 334
BstMBI	GATC	1 cut(s)	461
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 173
BstNSI	RCATGY	2 cut(s)	505, 541
BstSFI	CTRYAG	1 cut(s)	575
BstV1I	GCAGC	2 cut(s)	48, 510
BsuRI	GGCC	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	262
CseI	GACGC	4 cut(s)	126, 173, 278, 315
Csp6I	GTAC	3 cut(s)	214, 250, 310
CviAII	CATG	2 cut(s)	502, 538
CviJI	RGCY	7 cut(s)	140, 148, 201, 260, 299, 436, 523
CviKI_1	RGCY	7 cut(s)	140, 148, 201, 260, 299, 436, 523
CviQI	GTAC	3 cut(s)	214, 250, 310
DdeI	CTNAG	2 cut(s)	168, 306
DpnI	GATC	1 cut(s)	463
DpnII	GATC	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	2 cut(s)	505, 541
FaiI	YATR	5 cut(s)	144, 503, 539, 657, 669
FaqI	GGGAC	2 cut(s)	365, 622
FatI	CATG	2 cut(s)	501, 537
FblI	GTMKAC	1 cut(s)	574
Fnu4HI	GCNGC	2 cut(s)	37, 524
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	37, 524
GluI	GCNGC	2 cut(s)	37, 524
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	2 cut(s)	337, 661
HgaI	GACGC	4 cut(s)	126, 173, 278, 315
Hin1I	GRCGYC	2 cut(s)	270, 326
Hin1II	CATG	2 cut(s)	505, 541
HincII	GTYRAC	2 cut(s)	277, 679
HindII	GTYRAC	2 cut(s)	277, 679
HindIII	AAGCTT	2 cut(s)	138, 258
HinfI	GANTC	7 cut(s)	91, 346, 386, 447, 587, 620, 694
HpaI	GTTAAC	2 cut(s)	277, 679
HpaII	CCGG	2 cut(s)	337, 661
HphI	GGTGA	3 cut(s)	283, 395, 632
Hpy166II	GTNNAC	5 cut(s)	128, 277, 575, 616, 679
Hpy188I	TCNGA	5 cut(s)	268, 285, 360, 461, 699
Hpy188III	TCNNGA	5 cut(s)	133, 337, 350, 418, 686
Hpy8I	GTNNAC	5 cut(s)	128, 277, 575, 616, 679
Hpy99I	CGWCG	2 cut(s)	120, 272
HpyAV	CCTTC	1 cut(s)	692
HpyCH4III	ACNGT	2 cut(s)	227, 613
HpyCH4V	TGCA	5 cut(s)	111, 488, 505, 526, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 173
HpyF3I	CTNAG	2 cut(s)	168, 306
Hsp92I	GRCGYC	2 cut(s)	270, 326
Hsp92II	CATG	2 cut(s)	505, 541
Kpn2I	TCCGGA	1 cut(s)	336
KspAI	GTTAAC	2 cut(s)	277, 679
Kzo9I	GATC	1 cut(s)	461
LmnI	GCTCC	2 cut(s)	269, 554
LpnPI	CCDG	4 cut(s)	350, 555, 656, 674
Lsp1109I	GCAGC	2 cut(s)	48, 510
MaeIII	GTNAC	3 cut(s)	100, 161, 628
MalI	GATC	1 cut(s)	463
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	1 cut(s)	461
MboII	GAAGA	4 cut(s)	55, 70, 178, 627
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	3 cut(s)	361, 664, 700
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	3 cut(s)	291, 308, 732
MnlI	CCTC	9 cut(s)	47, 66, 163, 191, 227, 291, 316, 715, 735
MroI	TCCGGA	1 cut(s)	336
MseI	TTAA	3 cut(s)	276, 408, 678
MspI	CCGG	2 cut(s)	337, 661
MwoI	GCNNNNNNNGC	2 cut(s)	117, 173
NdeII	GATC	1 cut(s)	461
NlaIII	CATG	2 cut(s)	505, 541
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	2 cut(s)	100, 161
NspI	RCATGY	2 cut(s)	505, 541
PaeR7I	CTCGAG	1 cut(s)	195
PciI	ACATGT	1 cut(s)	537
PfeI	GAWTC	6 cut(s)	91, 346, 386, 447, 587, 694
PkrI	GCNGC	2 cut(s)	38, 525
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PscI	ACATGT	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	397
PspXI	VCTCGAGB	1 cut(s)	195
RsaI	GTAC	3 cut(s)	215, 251, 311
RsaNI	GTAC	3 cut(s)	214, 250, 310
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	276, 408, 678
SatI	GCNGC	2 cut(s)	37, 524
Sau3AI	GATC	1 cut(s)	461
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	1 cut(s)	629
SduI	GDGCHC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	575
Sfr274I	CTCGAG	1 cut(s)	195
SlaI	CTCGAG	1 cut(s)	195
SmlI	CTYRAG	4 cut(s)	131, 195, 416, 437
SmoI	CTYRAG	4 cut(s)	131, 195, 416, 437
Sse9I	AATT	3 cut(s)	361, 664, 700
SsiI	CCGC	2 cut(s)	547, 674
SstI	GAGCTC	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	227, 613
TaqI	TCGA	3 cut(s)	196, 519, 590
TasI	AATT	3 cut(s)	361, 664, 700
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	6 cut(s)	91, 346, 386, 447, 587, 694
Tru1I	TTAA	3 cut(s)	276, 408, 678
Tru9I	TTAA	3 cut(s)	276, 408, 678
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	100, 161
TseI	GCWGC	2 cut(s)	36, 523
Tsp45I	GTSAC	2 cut(s)	100, 161
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	2 cut(s)	361, 700
XceI	RCATGY	2 cut(s)	505, 541
XhoI	CTCGAG	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	574
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.