Rorug02G0423900

Floral homeotic protein AGAMOUS-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
54503395 .. 54505148
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0423900.1

Sequence Viewer

Length: 1080 bp
ATGAGCTCCGAAATTAGTGCAGCAAATGGAAATGGGAACTGCTTGGGATGGGCCGCAAGAGATGCTTCCGGAGTCCTATCGCCTTATAAATTTAATCGAAGGAATGTTCAAGCCGACGATGTTTCCATAAAGATCACACATTGTGGAGTTTGCTATGCTGAGGTCATTTGTCCAAGGAACAAACATGGAGATGCAACCTATCCTATGGTGCCTGGACATGAGATTGTTGGCATTGTGCAAGAGGTTGGTCCAAATGTTCATCGCTTCAAAGTTGGAGACCATGTTGGGGTTGGACCTTATACCAACTCATGTAGAGATTGCGAGTATTGTAACGATGGCCAAGAAGTTTACTGTGATAAGGGAGTAGTACTTACTTATAACCGTTTTGATTACAATGGCACCATCACCCATGGAGGGTTCTCCACTTTCACTGTTGTCCACGAAAGGTACTGCTTCAAAATACCAGAGGACTATCCATTGGCTTCAGCAGCACCACTGCTTTGTGCTGGCAGTACTGTTTACTCTCCCATGATGGACCATAAGATGAACCAACCTGGGAAATCCCTAGGCGTGATCGGCCTTGGCGGTCTTGGTCACATGGCTGTGAAATTCGGCAAGGCTTTGGGACTCAAGGTAACTGTTTTCAGCACAAGTATGTCAAAGAAAGACGAAGCTCTGACTCTGCTTGGAGCAGACAATTTCGTCATATCATCCAACCAAGACCAAATGAAGGCACTAGCTAAGTCACTTGACTTTATCATTGACACAGCATCTGGTGATCACCCATTCGACGAGTACATGTCACTACTGAAGACTGCTGGTGTTCTAGTCCTCGTGGGTGCCCCAAGTGAAATCAAATTGAGCCCTCTAAGCCTTATTATGGGTAAGAGATCAATTACCGGTAGCGCAGCAGGTGGTACAAAACAGATTCAAGAAATGATAAACTTTTGTGCCGCTCACAAGATATACCCAAACATAGAAGTTGTTCCAATTCAGTATGTGAATGAGGCTATTGAGAGGCTCATAAACAAGGATATCAAGTATCGCTTTGTGGTAGATATTGAAAACTCCCTGAAATGA

Protein Analysis

359

Amino Acids

38.95

Weight (kDa)

6.59

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 38 - 156 4.2e-25 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 196 - 318 2.9e-20 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 229 - 341 1.8e-06 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 87, 378
AarI CACCTGC 1 cut(s) 902
AasI GACNNNNNNGTC 1 cut(s) 701
Acc36I ACCTGC 1 cut(s) 902
AccB1I GGYRCC 3 cut(s) 208, 398, 839
AccBSI CCGCTC 1 cut(s) 956
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 3 cut(s) 54, 585, 954
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 2 cut(s) 89, 608
AcuI CTGAAG 2 cut(s) 468, 830
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 5 cut(s) 369, 449, 514, 797, 919
AfiI CCNNNNNNNGG 4 cut(s) 286, 414, 730, 880
AflIII ACRYGT 1 cut(s) 798
AgeI ACCGGT 1 cut(s) 899
AgsI TTSAA 5 cut(s) 110, 268, 457, 932, 1064
AjnI CCWGG 2 cut(s) 211, 553
AluBI AGCT 3 cut(s) 6, 674, 740
AluI AGCT 3 cut(s) 6, 674, 740
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 270
AlwNI CAGNNNCTG 1 cut(s) 773
Aor13HI TCCGGA 1 cut(s) 68
AoxI GGCC 3 cut(s) 51, 337, 577
ApeKI GCWGC 3 cut(s) 20, 488, 908
ApoI RAATTY 2 cut(s) 89, 608
AsiGI ACCGGT 1 cut(s) 899
Asp700I GAANNNNTTC 1 cut(s) 984
AspA2I CCTAGG 1 cut(s) 565
AspLEI GCGC 1 cut(s) 908
AspS9I GGNCC 4 cut(s) 51, 248, 293, 535
AsuHPI GGTGA 3 cut(s) 397, 773, 788
AvaII GGWCC 3 cut(s) 248, 293, 535
AvrII CCTAGG 1 cut(s) 565
BaeGI GKGCMC 1 cut(s) 844
BalI TGGCCA 1 cut(s) 339
BanI GGYRCC 3 cut(s) 208, 398, 839
BanII GRGCYC 2 cut(s) 8, 866
BauI CACGAG 1 cut(s) 833
BbsI GAAGAC 1 cut(s) 818
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 32, 500, 920
BccI CCATC 4 cut(s) 42, 329, 410, 526
BcgI CGANNNNNNTGC 1 cut(s) 33
BciT130I CCWGG 2 cut(s) 213, 555
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 3 cut(s) 566, 737, 827
BfuAI ACCTGC 1 cut(s) 902
BisI GCNGC 5 cut(s) 21, 54, 489, 909, 954
BlnI CCTAGG 1 cut(s) 565
BlsI GCNGC 5 cut(s) 22, 55, 490, 910, 955
BmcAI AGTACT 2 cut(s) 369, 514
Bme1390I CCNGG 2 cut(s) 213, 555
Bme18I GGWCC 3 cut(s) 248, 293, 535
BmgT120I GGNCC 4 cut(s) 51, 248, 293, 535
BmiI GGNNCC 3 cut(s) 210, 400, 841
BmrFI CCNGG 2 cut(s) 213, 555
BmsI GCATC 3 cut(s) 52, 181, 779
BpiI GAAGAC 1 cut(s) 818
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 614
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 5 cut(s) 173, 409, 554, 565, 580
BsaWI WCCGGW 2 cut(s) 68, 899
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 4 cut(s) 286, 414, 730, 880
Bse118I RCCGGY 1 cut(s) 899
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 2 cut(s) 213, 555
BseDI CCNNGG 5 cut(s) 173, 409, 554, 565, 580
BseGI GGATG 2 cut(s) 53, 710
BseLI CCNNNNNNNGG 4 cut(s) 286, 414, 730, 880
BseMII CTCAG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 3 cut(s) 32, 500, 920
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 3 cut(s) 53, 339, 579
BshNI GGYRCC 3 cut(s) 208, 398, 839
BshTI ACCGGT 1 cut(s) 899
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 69, 900
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 4 cut(s) 286, 414, 730, 880
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 639
BsnI GGCC 3 cut(s) 53, 339, 579
Bso31I GGTCTC 1 cut(s) 270
Bsp1286I GDGCHC 3 cut(s) 8, 844, 866
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 4 cut(s) 132, 573, 778, 890
Bsp19I CCATGG 1 cut(s) 409
BspACI CCGC 3 cut(s) 54, 585, 954
BspANI GGCC 3 cut(s) 53, 339, 579
BspCNI CTCAG 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 68
BspLI GGNNCC 3 cut(s) 210, 400, 841
BspMI ACCTGC 1 cut(s) 902
BspT107I GGYRCC 3 cut(s) 208, 398, 839
BspTNI GGTCTC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 956
BsrFI RCCGGY 1 cut(s) 899
BssAI RCCGGY 1 cut(s) 899
BssECI CCNNGG 5 cut(s) 173, 409, 554, 565, 580
BssMI GATC 4 cut(s) 132, 573, 778, 890
BssSI CACGAG 1 cut(s) 833
BssT1I CCWWGG 4 cut(s) 173, 409, 565, 580
Bst2BI CACGAG 1 cut(s) 833
Bst2UI CCWGG 2 cut(s) 213, 555
Bst4CI ACNGT 5 cut(s) 353, 383, 433, 517, 640
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 3 cut(s) 159, 741, 869
BstDSI CCRYGG 1 cut(s) 409
BstF5I GGATG 2 cut(s) 53, 710
BstHHI GCGC 1 cut(s) 908
BstKTI GATC 4 cut(s) 135, 576, 781, 893
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 4 cut(s) 132, 573, 778, 890
BstMWI GCNNNNNNNGC 4 cut(s) 62, 488, 576, 870
BstNI CCWGG 2 cut(s) 213, 555
BstNSI RCATGY 1 cut(s) 802
BstSCI CCNGG 2 cut(s) 211, 553
BstSLI GKGCMC 1 cut(s) 844
BstV1I GCAGC 3 cut(s) 32, 500, 920
BstV2I GAAGAC 1 cut(s) 818
BsuRI GGCC 3 cut(s) 53, 339, 579
BtgI CCRYGG 1 cut(s) 409
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 53, 710
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 2 cut(s) 429, 494
BveI ACCTGC 1 cut(s) 902
Cac8I GCNNGC 1 cut(s) 508
CaiI CAGNNNCTG 1 cut(s) 773
CfoI GCGC 1 cut(s) 908
Cfr10I RCCGGY 1 cut(s) 899
Cfr13I GGNCC 4 cut(s) 51, 248, 293, 535
Csp6I GTAC 5 cut(s) 368, 448, 513, 796, 918
CspAI ACCGGT 1 cut(s) 899
CviAII CATG 8 cut(s) 185, 218, 281, 309, 410, 529, 598, 799
CviQI GTAC 5 cut(s) 368, 448, 513, 796, 918
DdeI CTNAG 3 cut(s) 159, 741, 869
DpnI GATC 4 cut(s) 134, 575, 780, 892
DpnII GATC 4 cut(s) 132, 573, 778, 890
DraIII CACNNNGTG 1 cut(s) 143
DrdI GACNNNNNNGTC 1 cut(s) 701
DseDI GACNNNNNNGTC 1 cut(s) 701
EaeI YGGCCR 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 4 cut(s) 173, 409, 565, 580
Eco24I GRGCYC 2 cut(s) 8, 866
Eco31I GGTCTC 1 cut(s) 270
Eco32I GATATC 1 cut(s) 1036
Eco47I GGWCC 3 cut(s) 248, 293, 535
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 468, 830
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 211, 553
EcoRV GATATC 1 cut(s) 1036
EcoT14I CCWWGG 4 cut(s) 173, 409, 565, 580
EcoT38I GRGCYC 2 cut(s) 8, 866
ErhI CCWWGG 4 cut(s) 173, 409, 565, 580
FaeI CATG 8 cut(s) 188, 221, 284, 312, 413, 532, 601, 802
FalI AAGNNNNNCTT 4 cut(s) 49, 81, 1031, 1063
FaqI GGGAC 1 cut(s) 639
FatI CATG 8 cut(s) 184, 217, 280, 308, 409, 528, 597, 798
FbaI TGATCA 1 cut(s) 778
Fnu4HI GCNGC 5 cut(s) 21, 54, 489, 909, 954
FokI GGATG 2 cut(s) 60, 697
FriOI GRGCYC 2 cut(s) 8, 866
Fsp4HI GCNGC 5 cut(s) 21, 54, 489, 909, 954
FspBI CTAG 3 cut(s) 566, 737, 827
GlaI GCGC 1 cut(s) 907
GluI GCNGC 5 cut(s) 21, 54, 489, 909, 954
HaeIII GGCC 3 cut(s) 53, 339, 579
HapII CCGG 2 cut(s) 69, 900
HhaI GCGC 1 cut(s) 908
Hin1II CATG 8 cut(s) 188, 221, 284, 312, 413, 532, 601, 802
Hin6I GCGC 1 cut(s) 906
HinP1I GCGC 1 cut(s) 906
HinfI GANTC 4 cut(s) 72, 627, 679, 928
HpaII CCGG 2 cut(s) 69, 900
HphI GGTGA 3 cut(s) 397, 773, 788
Hpy166II GTNNAC 3 cut(s) 349, 439, 520
Hpy188I TCNGA 2 cut(s) 10, 678
Hpy188III TCNNGA 2 cut(s) 69, 932
Hpy8I GTNNAC 3 cut(s) 349, 439, 520
Hpy99I CGWCG 2 cut(s) 119, 794
HpyAV CCTTC 2 cut(s) 93, 724
HpyCH4III ACNGT 5 cut(s) 353, 383, 433, 517, 640
HpyCH4V TGCA 3 cut(s) 20, 194, 238
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 488, 576, 870
HpyF3I CTNAG 3 cut(s) 159, 741, 869
Hsp92II CATG 8 cut(s) 188, 221, 284, 312, 413, 532, 601, 802
HspAI GCGC 1 cut(s) 906
Kpn2I TCCGGA 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 4 cut(s) 132, 573, 778, 890
LmnI GCTCC 2 cut(s) 11, 689
Lsp1109I GCAGC 3 cut(s) 32, 500, 920
LweI GCATC 3 cut(s) 52, 181, 779
MaeI CTAG 3 cut(s) 566, 737, 827
MaeIII GTNAC 5 cut(s) 329, 593, 634, 744, 801
MalI GATC 4 cut(s) 134, 575, 780, 892
MbiI CCGCTC 1 cut(s) 956
MboI GATC 4 cut(s) 132, 573, 778, 890
MboII GAAGA 1 cut(s) 823
MhlI GDGCHC 3 cut(s) 8, 844, 866
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 7 cut(s) 12, 89, 608, 697, 857, 894, 990
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 3 cut(s) 81, 621, 673
MmeI TCCRAC 3 cut(s) 253, 271, 738
MnlI CCTC 8 cut(s) 154, 235, 407, 460, 842, 876, 1000, 1011
Mox20I TGGCCA 1 cut(s) 339
MroI TCCGGA 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 984
MscI TGGCCA 1 cut(s) 339
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 3 cut(s) 189, 602, 653
Msp20I TGGCCA 1 cut(s) 339
MspI CCGG 2 cut(s) 69, 900
MspR9I CCNGG 2 cut(s) 213, 555
MvaI CCWGG 2 cut(s) 213, 555
MwoI GCNNNNNNNGC 4 cut(s) 62, 488, 576, 870
NcoI CCATGG 1 cut(s) 409
NdeII GATC 4 cut(s) 132, 573, 778, 890
NlaIII CATG 8 cut(s) 188, 221, 284, 312, 413, 532, 601, 802
NlaIV GGNNCC 3 cut(s) 210, 400, 841
NmuCI GTSAC 3 cut(s) 593, 744, 801
NspI RCATGY 1 cut(s) 802
PaqCI CACCTGC 1 cut(s) 902
PciI ACATGT 1 cut(s) 798
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 1 cut(s) 928
PinAI ACCGGT 1 cut(s) 899
PkrI GCNGC 5 cut(s) 22, 55, 490, 910, 955
PleI GAGTC 3 cut(s) 80, 621, 673
PpsI GAGTC 3 cut(s) 80, 621, 673
PscI ACATGT 1 cut(s) 798
PsiI TTATAA 2 cut(s) 87, 378
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 211, 553
PspGI CCWGG 2 cut(s) 211, 553
PspN4I GGNNCC 3 cut(s) 210, 400, 841
PspPI GGNCC 4 cut(s) 51, 248, 293, 535
PstNI CAGNNNCTG 1 cut(s) 773
RsaI GTAC 5 cut(s) 369, 449, 514, 797, 919
RsaNI GTAC 5 cut(s) 368, 448, 513, 796, 918
RseI CAYNNNNRTG 3 cut(s) 189, 602, 653
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 5 cut(s) 21, 54, 489, 909, 954
Sau3AI GATC 4 cut(s) 132, 573, 778, 890
Sau96I GGNCC 4 cut(s) 51, 248, 293, 535
ScaI AGTACT 2 cut(s) 369, 514
SchI GAGTC 3 cut(s) 81, 621, 673
ScrFI CCNGG 2 cut(s) 213, 555
SduI GDGCHC 3 cut(s) 8, 844, 866
SfaNI GCATC 3 cut(s) 52, 181, 779
SinI GGWCC 3 cut(s) 248, 293, 535
SmiMI CAYNNNNRTG 3 cut(s) 189, 602, 653
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 7 cut(s) 12, 89, 608, 697, 857, 894, 990
SsiI CCGC 3 cut(s) 54, 585, 954
SspMI CTAG 3 cut(s) 566, 737, 827
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 211, 553
StyI CCWWGG 4 cut(s) 173, 409, 565, 580
TaaI ACNGT 5 cut(s) 353, 383, 433, 517, 640
TaqI TCGA 2 cut(s) 97, 789
TasI AATT 7 cut(s) 12, 89, 608, 697, 857, 894, 990
TatI WGTACW 3 cut(s) 367, 512, 795
TauI GCSGC 2 cut(s) 56, 956
TfiI GAWTC 1 cut(s) 928
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 2 cut(s) 436, 501
TseFI GTSAC 3 cut(s) 593, 744, 801
TseI GCWGC 3 cut(s) 20, 488, 908
Tsp45I GTSAC 3 cut(s) 593, 744, 801
TspDTI ATGAA 3 cut(s) 248, 560, 743
TspRI CASTG 2 cut(s) 436, 501
VpaK11BI GGWCC 3 cut(s) 248, 293, 535
XapI RAATTY 2 cut(s) 89, 608
XceI RCATGY 1 cut(s) 802
XcmI CCANNNNNNNNNTGG 1 cut(s) 287
XmaJI CCTAGG 1 cut(s) 565
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 3 cut(s) 566, 737, 827
ZrmI AGTACT 2 cut(s) 369, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.