Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005960

Physical Location & Seq

Genomic Coordinates Reverse (-)

12331919 .. 12338788

Gene Structure 6870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1155200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGTTCGCAAATCAAGCACCTGAGAGCTCTACCCAAAAAAAATTGGGAAGAGGCAAAATTGAGATTAAGCGGATCGAAAACACTACCAATCGACAAGTCACCTTCTGCAAACGCCGCAACGGATTGCTTAAGAAAGCCTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCGTCTTCTCCACCCGTGGCCGCCTCTATGAGTATGCTAACAACAGCGTTAGAGCAACAATCGACAGGTACAAAAAAGCATGCGCTGATTCTACGGACGGTGGATCTGTATCAGAAGCTAACACTCAGTTTTATCAGCAGGAAGCATCAAAACTGCGAAGACAGATCCGAGAAATTCAGAATTCAAACAGGCATATACTGGGGGAATCCCTTAGCACCTTGAAAGTCAAGGAACTGAAAAACCTAGAAGGAAGATTGGAGAAAGGAATCAGCAGAATAAGATCCAAAAAGAATGAAATCCTGTTTTCTGAAATCGAATTCATGCAAAAGAGGGAGACTGAGCTGCAACACCACAACAATTTTCTGAGAGCAAAGATAGCTGAAAGCGAGAGGGAACAGCAGCAGCAGCAAACACATATGATGCCGGGAACTTCCTACGATCCGTCGATGCCTTCGAATTCGTATGACAGGAACTTCTTCCCTGTGATCTTGGAGTCCAATAATAACCATTACCCTCGCCAAGGCCAGACAGCTCTTCAACTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

243

Amino Acids

27.99

Weight (kDa)

9.53

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	25 - 72	2e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	99 - 186	2e-27	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42830 AT2G42830 AT3G58780 AT3G58780 AT3G58780 AT3G58780 AT3G58780
fragaria_vesca	FvH4_6g37880 FvH4_6g37880 FvH4_6g37880
malus_domestica	MD09G1155200.v1.1 MD17G1141300.v1.1
prunus_persica	Prupe.3G170600_v2.0.a1
pyrus_communis	pycom09g07400 pycom17g13470
rosa_chinensis	RchiOBHm_Chr2g0151031
rosa_laevigata	RLG00000020525
rosa_multiflora	Rmu_sc0000185.1_g000040
rosa_roxburghii	Rroxscaffold_2G00096750
rosa_rugosa	Rorug02G0423600 Rorug02G0423600 Rorug02G0423700 Rorug02G0423800 Rorug02G0423900 Rorug02G0424000
rosa_samantha	Rh2CG470800
rosa_wichuraiana	Rw2G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	73, 118, 202
AclWI	GGATC	5 cut(s)	83, 292, 340, 456, 614
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	4 cut(s)	354, 361, 497, 637
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	701
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	366, 403, 719
AluBI	AGCT	5 cut(s)	30, 299, 523, 560, 713
AluI	AGCT	5 cut(s)	30, 299, 523, 560, 713
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	5 cut(s)	83, 292, 340, 456, 614
AoxI	GGCC	2 cut(s)	199, 703
ApeKI	GCWGC	4 cut(s)	523, 580, 583, 586
ApoI	RAATTY	4 cut(s)	354, 361, 497, 637
Asp700I	GAANNNNTTC	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	178, 346
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	510, 592, 595, 598
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	425
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	6 cut(s)	118, 202, 524, 581, 584, 587
BlsI	GCNGC	6 cut(s)	119, 203, 525, 582, 585, 588
Bme1390I	CCNGG	1 cut(s)	606
BmrFI	CCNGG	1 cut(s)	606
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	4 cut(s)	154, 335, 591, 618
BmuI	ACTGGG	1 cut(s)	389
BpiI	GAAGAC	2 cut(s)	178, 346
Bpu10I	CCTNAGC	1 cut(s)	392
Bpu14I	TTCGAA	1 cut(s)	635
BpuMI	CCSGG	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	196, 700
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse1I	ACTGG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	196, 700
BseJI	GATNNNNATC	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMII	CTCAG	4 cut(s)	15, 320, 510, 536
BseNI	ACTGG	1 cut(s)	384
BseXI	GCAGC	4 cut(s)	510, 592, 595, 598
BshFI	GGCC	2 cut(s)	201, 705
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	605
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	201, 705
Bsp119I	TTCGAA	1 cut(s)	635
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	6 cut(s)	75, 284, 345, 461, 619, 666
BspACI	CCGC	3 cut(s)	73, 118, 202
BspANI	GGCC	2 cut(s)	201, 705
BspCNI	CTCAG	4 cut(s)	16, 319, 511, 537
BspPI	GGATC	5 cut(s)	83, 292, 340, 456, 614
BspQI	GCTCTTC	1 cut(s)	720
BspT104I	TTCGAA	1 cut(s)	635
BspTI	CTTAAG	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	196, 700
BssMI	GATC	6 cut(s)	75, 284, 345, 461, 619, 666
BssT1I	CCWWGG	1 cut(s)	700
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	46, 720
BstAFI	CTTAAG	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	635
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	5 cut(s)	24, 306, 392, 519, 545
BstDSI	CCRYGG	1 cut(s)	196
BstENI	CCTNNNNNAGG	1 cut(s)	699
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	6 cut(s)	78, 287, 348, 464, 622, 669
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	6 cut(s)	75, 284, 345, 461, 619, 666
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 117, 173, 557, 586
BstNSI	RCATGY	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	604
BstV1I	GCAGC	4 cut(s)	510, 592, 595, 598
BstV2I	GAAGAC	2 cut(s)	178, 346
BstX2I	RGATCY	3 cut(s)	284, 345, 461
BstYI	RGATCY	3 cut(s)	284, 345, 461
BsuRI	GGCC	2 cut(s)	201, 705
BtgI	CCRYGG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	262
CfoI	GCGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	261, 502
CviJI	RGCY	8 cut(s)	30, 140, 201, 299, 523, 560, 705, 713
CviKI_1	RGCY	8 cut(s)	30, 140, 201, 299, 523, 560, 705, 713
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	5 cut(s)	24, 306, 392, 519, 545
DpnI	GATC	6 cut(s)	77, 286, 347, 463, 621, 668
DpnII	GATC	6 cut(s)	75, 284, 345, 461, 619, 666
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	46, 720
EarI	CTCTTC	2 cut(s)	46, 720
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	700
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	699
EcoRI	GAATTC	3 cut(s)	361, 497, 637
EcoT14I	CCWWGG	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	700
FaeI	CATG	2 cut(s)	264, 505
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FatI	CATG	2 cut(s)	260, 501
FauNDI	CATATG	1 cut(s)	597
Fnu4HI	GCNGC	6 cut(s)	118, 202, 524, 581, 584, 587
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	6 cut(s)	118, 202, 524, 581, 584, 587
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	6 cut(s)	118, 202, 524, 581, 584, 587
HaeIII	GGCC	2 cut(s)	201, 705
HapII	CCGG	1 cut(s)	605
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	264, 505
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	4 cut(s)	269, 386, 447, 674
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	5 cut(s)	295, 350, 360, 490, 546
Hpy99I	CGWCG	1 cut(s)	628
HpyAV	CCTTC	3 cut(s)	115, 422, 642
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	111, 505, 526
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 117, 173, 557, 586
HpyF3I	CTNAG	5 cut(s)	24, 306, 392, 519, 545
Hsp92II	CATG	2 cut(s)	264, 505
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	6 cut(s)	75, 284, 345, 461, 619, 666
LguI	GCTCTTC	1 cut(s)	720
Lsp1109I	GCAGC	4 cut(s)	510, 592, 595, 598
LweI	GCATC	4 cut(s)	154, 335, 591, 618
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	6 cut(s)	77, 286, 347, 463, 621, 668
MboI	GATC	6 cut(s)	75, 284, 345, 461, 619, 666
MboII	GAAGA	6 cut(s)	63, 178, 351, 444, 649, 707
MflI	RGATCY	3 cut(s)	284, 345, 461
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	8 cut(s)	44, 60, 146, 354, 361, 497, 538, 637
MlyI	GAGTC	1 cut(s)	683
MnlI	CCTC	5 cut(s)	47, 215, 504, 564, 705
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	2 cut(s)	69, 132
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	5 cut(s)	17, 117, 173, 557, 586
NciI	CCSGG	1 cut(s)	606
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	6 cut(s)	75, 284, 345, 461, 619, 666
NlaIII	CATG	2 cut(s)	264, 505
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	3 cut(s)	269, 386, 447
PkrI	GCNGC	6 cut(s)	119, 203, 525, 582, 585, 588
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
Psp124BI	GAGCTC	1 cut(s)	32
PsuI	RGATCY	3 cut(s)	284, 345, 461
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	720
SaqAI	TTAA	2 cut(s)	69, 132
SatI	GCNGC	6 cut(s)	118, 202, 524, 581, 584, 587
Sau3AI	GATC	6 cut(s)	75, 284, 345, 461, 619, 666
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	4 cut(s)	154, 335, 591, 618
SfuI	TTCGAA	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	8 cut(s)	44, 60, 146, 354, 361, 497, 538, 637
SsiI	CCGC	3 cut(s)	73, 118, 202
SspMI	CTAG	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	1 cut(s)	700
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	6 cut(s)	78, 94, 243, 495, 626, 635
TasI	AATT	8 cut(s)	44, 60, 146, 354, 361, 497, 538, 637
TauI	GCSGC	2 cut(s)	120, 204
TfiI	GAWTC	3 cut(s)	269, 386, 447
Tru1I	TTAA	2 cut(s)	69, 132
Tru9I	TTAA	2 cut(s)	69, 132
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	4 cut(s)	523, 580, 583, 586
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	159, 489, 490
TspGWI	ACGGA	3 cut(s)	138, 290, 612
Vha464I	CTTAAG	1 cut(s)	131
XagI	CCTNNNNNAGG	1 cut(s)	699
XapI	RAATTY	4 cut(s)	354, 361, 497, 637
XceI	RCATGY	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.