Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005960

Physical Location & Seq

Genomic Coordinates Reverse (-)

54472019 .. 54476059

Gene Structure 4041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0423700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGCGAAGGTCCGAAGCTCTACACCAACAAACCCAAGAAAGCACACCTGAAACAGTTTCAAGATCAACAGATTTTTGCTTCAGCATCATCAACAATGCCCTCTTCTCAGTCCTCCACTCCGCCACCGCCACCGCCGCAGCTCCCCAAAGAGTCGTTTGCTCGCCGTTACAAGTTTCTCTGGCCTTTGCTCTTGACTGTCAATCTCGGCGTTGGAGCTTACTTGTTCATGCGGACGAAAAAGAAAGAGATAGTTGTGGAGGAAGAAGTTACTACTGCAGTTTCAACTGTTGCCCAAACAACTCCTACTACTGAGAAACCCCTACCCCCGCCAACCATCACAGAGCCTGTGAAATTGCGAGAACCAATCTCAGAGGATCAACAACGCGAAGTTTTCAAGTGGATTCTGGAAGAAAAAAGAAAGGTTAAACCAAAGGATCCTGAAGAGAAGAAGCGGATTGATGAGGAGAAAGCCCTTCTGAAACAGTTTATCAGAGCAAAATCTCTTCCAAGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

172

Amino Acids

19.74

Weight (kDa)

9.75

Isoelectric Point (pI)

64.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42830 AT2G42830 AT3G58780 AT3G58780 AT3G58780 AT3G58780 AT3G58780
fragaria_vesca	FvH4_6g37880 FvH4_6g37880 FvH4_6g37880
malus_domestica	MD09G1155200.v1.1 MD17G1141300.v1.1
prunus_persica	Prupe.3G170600_v2.0.a1
pyrus_communis	pycom09g07400 pycom17g13470
rosa_chinensis	RchiOBHm_Chr2g0151031
rosa_laevigata	RLG00000020525
rosa_multiflora	Rmu_sc0000185.1_g000040
rosa_roxburghii	Rroxscaffold_2G00096750
rosa_rugosa	Rorug02G0423600 Rorug02G0423600 Rorug02G0423700 Rorug02G0423800 Rorug02G0423900 Rorug02G0424000
rosa_samantha	Rh2CG470800
rosa_wichuraiana	Rw2G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	387
AciI	CCGC	7 cut(s)	122, 128, 134, 137, 232, 329, 454
AclWI	GGATC	3 cut(s)	384, 431, 444
AcuI	CTGAAG	2 cut(s)	66, 462
AgsI	TTSAA	3 cut(s)	62, 285, 397
AluBI	AGCT	3 cut(s)	19, 142, 218
AluI	AGCT	3 cut(s)	19, 142, 218
AlwI	GGATC	3 cut(s)	384, 431, 444
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	2 cut(s)	137, 140
BlsI	GCNGC	2 cut(s)	138, 141
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	438
BmsI	GCATC	1 cut(s)	95
BseMII	CTCAG	3 cut(s)	122, 303, 384
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	64, 376, 436
BspACI	CCGC	7 cut(s)	122, 128, 134, 137, 232, 329, 454
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	3 cut(s)	121, 304, 383
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	3 cut(s)	384, 431, 444
BssMI	GATC	3 cut(s)	64, 376, 436
Bst4CI	ACNGT	4 cut(s)	57, 199, 289, 486
Bst6I	CTCTTC	3 cut(s)	109, 438, 510
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	108, 312, 370
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	3 cut(s)	67, 379, 439
BstMBI	GATC	3 cut(s)	64, 376, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	163
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	11
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	6 cut(s)	19, 142, 184, 218, 346, 473
CviKI_1	RGCY	6 cut(s)	19, 142, 184, 218, 346, 473
DdeI	CTNAG	3 cut(s)	108, 312, 370
DpnI	GATC	3 cut(s)	66, 378, 438
DpnII	GATC	3 cut(s)	64, 376, 436
Eam1104I	CTCTTC	3 cut(s)	109, 438, 510
EarI	CTCTTC	3 cut(s)	109, 438, 510
EciI	GGCGGA	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	66, 462
FaeI	CATG	1 cut(s)	232
FaiI	YATR	1 cut(s)	230
FatI	CATG	1 cut(s)	228
FauI	CCCGC	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	137, 140
Fsp4HI	GCNGC	2 cut(s)	137, 140
GluI	GCNGC	2 cut(s)	137, 140
HaeIII	GGCC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	3 cut(s)	152, 403, 513
Hpy188I	TCNGA	4 cut(s)	15, 373, 480, 494
Hpy188III	TCNNGA	4 cut(s)	62, 193, 407, 440
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	4 cut(s)	57, 199, 289, 486
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	3 cut(s)	108, 312, 370
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	64, 376, 436
LmnI	GCTCC	2 cut(s)	147, 215
LpnPI	CCDG	5 cut(s)	62, 166, 360, 392, 453
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	167, 268
MalI	GATC	3 cut(s)	66, 378, 438
MboI	GATC	3 cut(s)	64, 376, 436
MboII	GAAGA	6 cut(s)	96, 275, 422, 455, 460, 497
MflI	RGATCY	1 cut(s)	436
MluCI	AATT	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	5 cut(s)	112, 124, 253, 367, 457
MseI	TTAA	1 cut(s)	426
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	3 cut(s)	64, 376, 436
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	438
NmeAIII	GCCGAG	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	403, 513
PkrI	GCNGC	2 cut(s)	138, 141
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	2 cut(s)	137, 140
Sau3AI	GATC	3 cut(s)	64, 376, 436
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	161
SetI	ASST	6 cut(s)	13, 21, 51, 144, 220, 426
SfaNI	GCATC	1 cut(s)	95
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	1 cut(s)	353
SsiI	CCGC	7 cut(s)	122, 128, 134, 137, 232, 329, 454
TaaI	ACNGT	4 cut(s)	57, 199, 289, 486
TasI	AATT	1 cut(s)	353
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	403, 513
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.