Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005960

Physical Location & Seq

Genomic Coordinates Forward (+)

29835262 .. 29843725

Gene Structure 8464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAGATCCCAAAACAAATCACACCAGCTGATGATCCTGAGAGCTCTTCCCAAAAGAAATTGGGAAGAGGGAAAATTGAGATCAAGAGGATTGAAAACACTACTAATCGGCAAGTCACATTCTGCAAGCGCCGCAACGGTTTGCTTAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTGTTCTCCACCCGGGGGCGCCTCTATGAATATGCCAACAACAGTGTTAGAGCAACAATCGAAAGGTACAAGAAAGCATGTGATTCTTCAAACACTGGATCTGTTACTGAGGCTAATGTTCAGTTTTATCAGCAAGAAGCATCCAAACTAAGAAGACAGATCAGAGAAATTCAGAATTCAAACAGGCACATATTGGGGGAAGCTCTTAGCACTTTGAACGTCAAGGAACTGAAGAATCTTGAAGGAAGATTGGAGAAAGGGATCAGCAGAATAAGATCCAAGAAGAATGAAATGCTGTTTGCTGAAATCGAATATATGCAAAAGAGGGAGATCGAGCTGCAGAATCATAACAATTTTCTGAGAGCAAAGATTGCTGAAAATGATAGGGCACAGCAGCAGCAAGCAAATATGCTGCCAGGAACATCGTCCGCGTATGAGCAACCAATGCCTCCTCCTCAATCATATGATAGGAGCTTTCTCCCTGTGATCATCGAGTCCAATCACAATTACAATCGCCAAGGGCAGAACCTGACACCTCTCCAACTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

250

Amino Acids

28.67

Weight (kDa)

9.51

Isoelectric Point (pI)

69.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	30 - 77	2.1e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	104 - 190	2.8e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42830 AT2G42830 AT3G58780 AT3G58780 AT3G58780 AT3G58780 AT3G58780
fragaria_vesca	FvH4_6g37880 FvH4_6g37880 FvH4_6g37880
malus_domestica	MD09G1155200.v1.1 MD17G1141300.v1.1
prunus_persica	Prupe.3G170600_v2.0.a1
pyrus_communis	pycom09g07400 pycom17g13470
rosa_chinensis	RchiOBHm_Chr2g0151031
rosa_laevigata	RLG00000020525
rosa_multiflora	Rmu_sc0000185.1_g000040
rosa_roxburghii	Rroxscaffold_2G00096750
rosa_rugosa	Rorug02G0423600 Rorug02G0423600 Rorug02G0423700 Rorug02G0423800 Rorug02G0423900 Rorug02G0424000
rosa_samantha	Rh2CG470800
rosa_wichuraiana	Rw2G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AccII	CGCG	1 cut(s)	629
AciI	CCGC	2 cut(s)	133, 627
AclWI	GGATC	4 cut(s)	29, 304, 467, 468
AcsI	RAATTY	2 cut(s)	366, 373
AcuI	CTGAAG	2 cut(s)	204, 449
AcyI	GRCGYC	1 cut(s)	217
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	213
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	5 cut(s)	95, 288, 378, 415, 440
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	6 cut(s)	29, 45, 155, 401, 535, 672
AluI	AGCT	6 cut(s)	29, 45, 155, 401, 535, 672
Alw21I	GWGCWC	1 cut(s)	47
AlwI	GGATC	4 cut(s)	29, 304, 467, 468
AlwNI	CAGNNNCTG	1 cut(s)	727
Ama87I	CYCGRG	1 cut(s)	210
ApeKI	GCWGC	4 cut(s)	535, 592, 595, 610
ApoI	RAATTY	2 cut(s)	366, 373
AspLEI	GCGC	2 cut(s)	132, 219
AsuC2I	CCSGG	2 cut(s)	211, 212
AvaI	CYCGRG	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	4 cut(s)	522, 597, 604, 607
BciT130I	CCWGG	1 cut(s)	615
BclI	TGATCA	1 cut(s)	684
BcnI	CCSGG	2 cut(s)	211, 212
BfmI	CTRYAG	1 cut(s)	536
BfoI	RGCGCY	2 cut(s)	133, 220
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	5 cut(s)	133, 536, 593, 596, 611
BlsI	GCNGC	5 cut(s)	134, 537, 594, 597, 612
Bme1390I	CCNGG	3 cut(s)	211, 212, 615
BmeT110I	CYCGRG	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	3 cut(s)	211, 212, 615
BmsI	GCATC	2 cut(s)	169, 347
BpiI	GAAGAC	1 cut(s)	358
BpuMI	CCSGG	2 cut(s)	211, 212
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	210, 211, 715
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	3 cut(s)	210, 211, 715
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMII	CTCAG	3 cut(s)	30, 297, 548
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	639, 642
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	4 cut(s)	522, 597, 604, 607
Bsh1236I	CGCG	1 cut(s)	629
BshNI	GGYRCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	47
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	47, 589
Bsp143I	GATC	9 cut(s)	6, 34, 81, 296, 357, 459, 473, 528, 684
BspACI	CCGC	2 cut(s)	133, 627
BspCNI	CTCAG	3 cut(s)	31, 298, 549
BspFNI	CGCG	1 cut(s)	629
BspLI	GGNNCC	1 cut(s)	218
BspMAI	CTGCAG	1 cut(s)	540
BspPI	GGATC	4 cut(s)	29, 304, 467, 468
BspQI	GCTCTTC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	210, 211, 715
BssMI	GATC	9 cut(s)	6, 34, 81, 296, 357, 459, 473, 528, 684
BssNI	GRCGYC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	715
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	2 cut(s)	140, 242
Bst6I	CTCTTC	2 cut(s)	52, 61
BstACI	GRCGYC	1 cut(s)	217
BstAFI	CTTAAG	1 cut(s)	146
BstAPI	GCANNNNNTGC	2 cut(s)	569, 643
BstC8I	GCNNGC	2 cut(s)	128, 600
BstDEI	CTNAG	5 cut(s)	39, 306, 347, 404, 557
BstF5I	GGATG	1 cut(s)	338
BstFNI	CGCG	1 cut(s)	629
BstH2I	RGCGCY	2 cut(s)	133, 220
BstHHI	GCGC	2 cut(s)	132, 219
BstKTI	GATC	9 cut(s)	9, 37, 84, 299, 360, 462, 476, 531, 687
BstMBI	GATC	9 cut(s)	6, 34, 81, 296, 357, 459, 473, 528, 684
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 188, 569, 643
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	3 cut(s)	209, 210, 613
BstSFI	CTRYAG	1 cut(s)	536
BstSLI	GKGCMC	1 cut(s)	589
BstUI	CGCG	1 cut(s)	629
BstV1I	GCAGC	4 cut(s)	522, 597, 604, 607
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	3 cut(s)	6, 296, 473
BstYI	RGATCY	3 cut(s)	6, 296, 473
BtsCI	GGATG	1 cut(s)	338
BtsIMutI	CAGTG	2 cut(s)	247, 291
Cac8I	GCNNGC	2 cut(s)	128, 600
CaiI	CAGNNNCTG	1 cut(s)	727
CfoI	GCGC	2 cut(s)	132, 219
Cfr9I	CCCGGG	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	7 cut(s)	29, 45, 155, 311, 401, 535, 672
CviKI_1	RGCY	7 cut(s)	29, 45, 155, 311, 401, 535, 672
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	5 cut(s)	39, 306, 347, 404, 557
DinI	GGCGCC	1 cut(s)	218
DpnI	GATC	9 cut(s)	8, 36, 83, 298, 359, 461, 475, 530, 686
DpnII	GATC	9 cut(s)	6, 34, 81, 296, 357, 459, 473, 528, 684
Eam1104I	CTCTTC	2 cut(s)	52, 61
EarI	CTCTTC	2 cut(s)	52, 61
Ecl136II	GAGCTC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	715
Eco24I	GRGCYC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	45
Eco57I	CTGAAG	2 cut(s)	204, 449
Eco88I	CYCGRG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	47
EgeI	GGCGCC	1 cut(s)	218
EheI	GGCGCC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	715
FaeI	CATG	1 cut(s)	279
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	1 cut(s)	275
FauNDI	CATATG	1 cut(s)	661
FbaI	TGATCA	1 cut(s)	684
Fnu4HI	GCNGC	5 cut(s)	133, 536, 593, 596, 611
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	5 cut(s)	133, 536, 593, 596, 611
GlaI	GCGC	2 cut(s)	131, 218
GluI	GCNGC	5 cut(s)	133, 536, 593, 596, 611
HaeII	RGCGCY	2 cut(s)	133, 220
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	2 cut(s)	132, 219
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	1 cut(s)	279
Hin6I	GCGC	2 cut(s)	130, 217
HinP1I	GCGC	2 cut(s)	130, 217
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	4 cut(s)	281, 433, 541, 692
HpaII	CCGG	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	362, 372, 558
Hpy188III	TCNNGA	3 cut(s)	38, 85, 437
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	2 cut(s)	140, 242
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	126, 517, 538
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 188, 569, 643
HpyF3I	CTNAG	5 cut(s)	39, 306, 347, 404, 557
HpySE526I	ACGT	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	279
HspAI	GCGC	2 cut(s)	130, 217
KasI	GGCGCC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	9 cut(s)	6, 34, 81, 296, 357, 459, 473, 528, 684
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	669
LpnPI	CCDG	9 cut(s)	39, 51, 224, 279, 367, 600, 627, 693, 740
Lsp1109I	GCAGC	4 cut(s)	522, 597, 604, 607
LweI	GCATC	2 cut(s)	169, 347
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	115, 301
MalI	GATC	9 cut(s)	8, 36, 83, 298, 359, 461, 475, 530, 686
MboI	GATC	9 cut(s)	6, 34, 81, 296, 357, 459, 473, 528, 684
MboII	GAAGA	7 cut(s)	39, 78, 276, 363, 442, 456, 493
MflI	RGATCY	3 cut(s)	6, 296, 473
MhlI	GDGCHC	2 cut(s)	47, 589
MluCI	AATT	6 cut(s)	59, 75, 366, 373, 550, 703
Mly113I	GGCGCC	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	701
MnlI	CCTC	9 cut(s)	62, 81, 230, 301, 516, 657, 660, 663, 744
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	3 cut(s)	211, 212, 615
MvaI	CCWGG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	629
MwoI	GCNNNNNNNGC	4 cut(s)	132, 188, 569, 643
NarI	GGCGCC	1 cut(s)	217
NciI	CCSGG	2 cut(s)	211, 212
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	9 cut(s)	6, 34, 81, 296, 357, 459, 473, 528, 684
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	52
PfeI	GAWTC	3 cut(s)	281, 433, 541
PkrI	GCNGC	5 cut(s)	134, 537, 594, 597, 612
PleI	GAGTC	1 cut(s)	700
PluTI	GGCGCC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	700
Psp124BI	GAGCTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	540
PstNI	CAGNNNCTG	1 cut(s)	727
PsuI	RGATCY	3 cut(s)	6, 296, 473
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	5 cut(s)	133, 536, 593, 596, 611
Sau3AI	GATC	9 cut(s)	6, 34, 81, 296, 357, 459, 473, 528, 684
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	3 cut(s)	211, 212, 615
SduI	GDGCHC	2 cut(s)	47, 589
SfaNI	GCATC	2 cut(s)	169, 347
SfcI	CTRYAG	1 cut(s)	536
SfoI	GGCGCC	1 cut(s)	218
SmaI	CCCGGG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	6 cut(s)	59, 75, 366, 373, 550, 703
SsiI	CCGC	2 cut(s)	133, 627
SspDI	GGCGCC	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	209, 210, 613
StyI	CCWWGG	1 cut(s)	715
TaaI	ACNGT	2 cut(s)	140, 242
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	4 cut(s)	258, 507, 531, 690
TasI	AATT	6 cut(s)	59, 75, 366, 373, 550, 703
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	3 cut(s)	281, 433, 541
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	247, 298
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	4 cut(s)	535, 592, 595, 610
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	174, 240, 501
TspMI	CCCGGG	1 cut(s)	210
TspRI	CASTG	2 cut(s)	247, 298
Vha464I	CTTAAG	1 cut(s)	146
XapI	RAATTY	2 cut(s)	366, 373
XceI	RCATGY	1 cut(s)	279
XmaI	CCCGGG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.