Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005960

Physical Location & Seq

Genomic Coordinates Reverse (-)

12691528 .. 12700308

Gene Structure 8781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1141300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGTTCCCAAATCAAGCACCCGAGAGCTCCTCCCAGAAAAAATTGGGAAGGGGCAAAATTGAGATTAAGCGGATCGAAAACACTACAAATCGACAAGTTACCTTCTGCAAACGCCGCAACGGATTGCTTAAGAAAGCCTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCGTGTTCTCCAACCGTGGCCGCCTCTATGAGTATGCTAACAACAGCTTCCATGTATCTCCGTTTGTTAGAGCAACAATCGACAGGTACAAAAAAGCATGCGCTGATCCTACGAACAGTGGATCTGTTTCAGAAGCCAACACTCAGTTTTATCAGCAGGAAGCATCCAAACTGCGAAGACAGATCCGAGAAATTCAGAATTCAAACAGGCATATACTGGGTGAAGCTCTTAGCTCCTTGAACGCCAAGGAACTGAAGAACCTAGAAGGAAGATTGGAGAAAGGAATCAGCAGAATAAGATCCAAAAAGAATGAAATGCTGTTTTCTGAAATCGAATTCATGCAAAAAAGGGAGACCGAGCTGCAACACCACAACAATTTTCTGAGAGCAAAGATAGCTGAAAACGAGAGGGAAGAGCAGCAGCATACACACATGATGCCGGGAACTTCCTACGATCAGTCAATGCCTTCGCATTCTTATGACAGGAACTTCCTCCCAGCGGTGATCTTGGAGTCCAACAATAACCATTACCCTCACCAAGTCCAGACAGCTCTCCAACTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

249

Amino Acids

28.74

Weight (kDa)

9.38

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	25 - 72	1.5e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	105 - 192	4e-27	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42830 AT2G42830 AT3G58780 AT3G58780 AT3G58780 AT3G58780 AT3G58780
fragaria_vesca	FvH4_6g37880 FvH4_6g37880 FvH4_6g37880
malus_domestica	MD09G1155200.v1.1 MD17G1141300.v1.1
prunus_persica	Prupe.3G170600_v2.0.a1
pyrus_communis	pycom09g07400 pycom17g13470
rosa_chinensis	RchiOBHm_Chr2g0151031
rosa_laevigata	RLG00000020525
rosa_multiflora	Rmu_sc0000185.1_g000040
rosa_roxburghii	Rroxscaffold_2G00096750
rosa_rugosa	Rorug02G0423600 Rorug02G0423600 Rorug02G0423700 Rorug02G0423800 Rorug02G0423900 Rorug02G0424000
rosa_samantha	Rh2CG470800
rosa_wichuraiana	Rw2G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	73, 118, 202, 680
AclWI	GGATC	5 cut(s)	83, 281, 310, 358, 474
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	3 cut(s)	372, 379, 515
AcuI	CTGAAG	2 cut(s)	189, 455
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	679
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	384, 421
AluBI	AGCT	7 cut(s)	30, 228, 407, 414, 541, 578, 731
AluI	AGCT	7 cut(s)	30, 228, 407, 414, 541, 578, 731
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	5 cut(s)	83, 281, 310, 358, 474
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	3 cut(s)	541, 598, 601
ApoI	RAATTY	3 cut(s)	372, 379, 515
AspLEI	GCGC	1 cut(s)	284
AsuC2I	CCSGG	1 cut(s)	621
AsuHPI	GGTGA	3 cut(s)	413, 694, 707
AvaI	CYCGRG	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	528, 610, 613
BcnI	CCSGG	1 cut(s)	621
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	1 cut(s)	443
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	5 cut(s)	118, 202, 542, 599, 602
BlsI	GCNGC	5 cut(s)	119, 203, 543, 600, 603
Bme1390I	CCNGG	1 cut(s)	621
BmeT110I	CYCGRG	1 cut(s)	23
BmrFI	CCNGG	1 cut(s)	621
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	3 cut(s)	154, 353, 606
BmuI	ACTGGG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	364
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuMI	CCSGG	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	196, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse1I	ACTGG	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	196, 426
BseGI	GGATG	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMII	CTCAG	2 cut(s)	338, 554
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	528, 610, 613
BseYI	CCCAGC	1 cut(s)	676
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	620
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	527
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	7 cut(s)	75, 286, 302, 363, 479, 634, 684
BspACI	CCGC	4 cut(s)	73, 118, 202, 680
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	337, 555
BspPI	GGATC	5 cut(s)	83, 281, 310, 358, 474
BspQI	GCTCTTC	1 cut(s)	588
BspTI	CTTAAG	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	2 cut(s)	196, 426
BssMI	GATC	7 cut(s)	75, 286, 302, 363, 479, 634, 684
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	197, 299
Bst6I	CTCTTC	1 cut(s)	588
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	3 cut(s)	324, 410, 563
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	7 cut(s)	78, 289, 305, 366, 482, 637, 687
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	7 cut(s)	75, 286, 302, 363, 479, 634, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 173, 575
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	619
BstV1I	GCAGC	3 cut(s)	528, 610, 613
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	3 cut(s)	302, 363, 479
BstYI	RGATCY	3 cut(s)	302, 363, 479
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	344
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	280
CfoI	GCGC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	4 cut(s)	233, 279, 520, 613
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	3 cut(s)	324, 410, 563
DpnI	GATC	7 cut(s)	77, 288, 304, 365, 481, 636, 686
DpnII	GATC	7 cut(s)	75, 286, 302, 363, 479, 634, 684
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	527
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	189, 455
Eco88I	CYCGRG	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	30
EcoRI	GAATTC	2 cut(s)	379, 515
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	4 cut(s)	236, 282, 523, 616
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FatI	CATG	4 cut(s)	232, 278, 519, 612
Fnu4HI	GCNGC	5 cut(s)	118, 202, 542, 599, 602
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	5 cut(s)	118, 202, 542, 599, 602
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	5 cut(s)	118, 202, 542, 599, 602
GsaI	CCCAGC	1 cut(s)	680
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	620
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	4 cut(s)	236, 282, 523, 616
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	465, 692
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	3 cut(s)	413, 694, 707
Hpy188I	TCNGA	5 cut(s)	313, 368, 378, 508, 564
Hpy188III	TCNNGA	1 cut(s)	724
HpyAV	CCTTC	4 cut(s)	45, 115, 440, 657
HpyCH4III	ACNGT	2 cut(s)	197, 299
HpyCH4V	TGCA	3 cut(s)	111, 523, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 173, 575
HpyF3I	CTNAG	3 cut(s)	324, 410, 563
Hsp92II	CATG	4 cut(s)	236, 282, 523, 616
HspAI	GCGC	1 cut(s)	282
Kzo9I	GATC	7 cut(s)	75, 286, 302, 363, 479, 634, 684
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	2 cut(s)	35, 419
LpnPI	CCDG	9 cut(s)	50, 250, 323, 373, 383, 633, 649, 690, 737
Lsp1109I	GCAGC	3 cut(s)	528, 610, 613
LweI	GCATC	3 cut(s)	154, 353, 606
MaeI	CTAG	1 cut(s)	443
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	7 cut(s)	77, 288, 304, 365, 481, 636, 686
MboI	GATC	7 cut(s)	75, 286, 302, 363, 479, 634, 684
MboII	GAAGA	4 cut(s)	369, 448, 462, 605
MflI	RGATCY	3 cut(s)	302, 363, 479
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	7 cut(s)	44, 60, 146, 372, 379, 515, 556
MlyI	GAGTC	1 cut(s)	701
MmeI	TCCRAC	2 cut(s)	216, 720
MnlI	CCTC	5 cut(s)	43, 215, 582, 683, 723
MseI	TTAA	2 cut(s)	69, 132
MslI	CAYNNNNRTG	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	680
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	652
MwoI	GCNNNNNNNGC	3 cut(s)	117, 173, 575
NciI	CCSGG	1 cut(s)	621
NdeII	GATC	7 cut(s)	75, 286, 302, 363, 479, 634, 684
NlaIII	CATG	4 cut(s)	236, 282, 523, 616
NspI	RCATGY	1 cut(s)	282
PaeI	GCATGC	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	588
PctI	GAATGC	1 cut(s)	652
PfeI	GAWTC	1 cut(s)	465
PkrI	GCNGC	5 cut(s)	119, 203, 543, 600, 603
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
Psp124BI	GAGCTC	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	676
PsuI	RGATCY	3 cut(s)	302, 363, 479
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	657
SacI	GAGCTC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	2 cut(s)	69, 132
SatI	GCNGC	5 cut(s)	118, 202, 542, 599, 602
Sau3AI	GATC	7 cut(s)	75, 286, 302, 363, 479, 634, 684
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	1 cut(s)	621
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	3 cut(s)	154, 353, 606
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SphI	GCATGC	1 cut(s)	282
Sse9I	AATT	7 cut(s)	44, 60, 146, 372, 379, 515, 556
SsiI	CCGC	4 cut(s)	73, 118, 202, 680
SspMI	CTAG	1 cut(s)	443
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	619
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	197, 299
TaqI	TCGA	4 cut(s)	78, 94, 261, 513
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	7 cut(s)	44, 60, 146, 372, 379, 515, 556
TauI	GCSGC	2 cut(s)	120, 204
TfiI	GAWTC	1 cut(s)	465
Tru1I	TTAA	2 cut(s)	69, 132
Tru9I	TTAA	2 cut(s)	69, 132
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	3 cut(s)	541, 598, 601
TspDTI	ATGAA	3 cut(s)	159, 507, 508
TspGWI	ACGGA	2 cut(s)	138, 231
TspRI	CASTG	1 cut(s)	304
Vha464I	CTTAAG	1 cut(s)	131
XapI	RAATTY	3 cut(s)	372, 379, 515
XceI	RCATGY	1 cut(s)	282
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.