Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005960

Physical Location & Seq

Genomic Coordinates Reverse (-)

54465308 .. 54470202

Gene Structure 4895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0423600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGGAAGTCTTCTATATTGCTCATCAATGGAAGCTTGCAAAGAAGAATCCATGGACTCATAGGAGCTTTCTTTAAGTCTCCACACCTCAAAGCTCAAATCACCAGAGACATGCAGAAGTATGTCCAAGAATCAATGGCAACTTGGAGAGATGACCTTCCCATTTTCATTCAAGATGAAACCAAAAATATTGCATTTCAAGTACTTGTCAAAGCATTGATTAGTCTGGATCCTGGTGAGGACATGGAGTTTCTAAAGAAACAGTTCCAAGAATTCATTGCTGGCCTCATGTCTATACCCATCAATATTCCTGGAAGTAGACTTTACAGATCATTACAGGCCAAGAAGAAAATGGTCAAGCTAGTCCAGAAAATTATACAAGCTAAAAAGGAGAGTGGGATCTCCAATGTTTCCCAAGATGTGGTGGATGTTTTGCTCAATGACACAAGTGATCAATTAACAGATGATCTTATTGCAGATAACATGATTGATATGATGATACCAGGAGAGGATTCAGTACCACTTCTTATGACTCTTGCAATCAAATACCTTTCAGATTCCCCCACTGCTCTTCAACAGTTAACGAAGGAGAACATGGAGTTAAAAACACTCAAAGAGCAGCTTGGAGTGCCATTGTGTTGGAGTGATTACTTATCCTTACCATTTACACATAATGTGATTACAGAAACTCTAAGGATGGGAAACATCATAAATGGGGTGATGAGGAAGGCCATGAAAGATGTTGAGATAAAAGGCTATCAAATACCAAAGGGGTGGTGTGTCTTCACATACTTTAGATCAGTGCATCTTGATGAGAATAACTATGATGGGGCTTATGACTTCAATCCATGGAGATGGCAAGACAAAGACATAAGCAGCTGTAACTTCACTCCTTTTGGAGGTGGACAAAGACTTTGTCCTGGGCTTGACTTGGCTAGGCTGGAAGCTTCCATCTTCCTACACCACTTTATCACTCAGTTCAGTTGGGTGGCTGAGGATGACACAATTGTAAACTTCCCCACTGTAAGAATGAAGAGGAGGATGCCAATCTGGGTCAAAAGGAGAAGGGTCGATCAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

360

Amino Acids

41.38

Weight (kDa)

8.2

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	103 - 335	2.7e-43	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42830 AT2G42830 AT3G58780 AT3G58780 AT3G58780 AT3G58780 AT3G58780
fragaria_vesca	FvH4_6g37880 FvH4_6g37880 FvH4_6g37880
malus_domestica	MD09G1155200.v1.1 MD17G1141300.v1.1
prunus_persica	Prupe.3G170600_v2.0.a1
pyrus_communis	pycom09g07400 pycom17g13470
rosa_chinensis	RchiOBHm_Chr2g0151031
rosa_laevigata	RLG00000020525
rosa_multiflora	Rmu_sc0000185.1_g000040
rosa_roxburghii	Rroxscaffold_2G00096750
rosa_rugosa	Rorug02G0423600 Rorug02G0423600 Rorug02G0423700 Rorug02G0423800 Rorug02G0423900 Rorug02G0424000
rosa_samantha	Rh2CG470800
rosa_wichuraiana	Rw2G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	319
AclWI	GGATC	3 cut(s)	224, 237, 407
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	3 cut(s)	204, 519, 1079
AfiI	CCNNNNNNNGG	2 cut(s)	421, 899
AgsI	TTSAA	4 cut(s)	173, 200, 575, 844
AjnI	CCWGG	4 cut(s)	232, 310, 502, 919
AluBI	AGCT	8 cut(s)	36, 68, 95, 361, 383, 622, 879, 947
AluI	AGCT	8 cut(s)	36, 68, 95, 361, 383, 622, 879, 947
Alw26I	GTCTC	2 cut(s)	84, 102
AlwI	GGATC	3 cut(s)	224, 237, 407
AoxI	GGCC	3 cut(s)	283, 339, 729
ApeKI	GCWGC	2 cut(s)	619, 876
ApoI	RAATTY	1 cut(s)	272
ArsI	GACNNNNNNTTYG	4 cut(s)	897, 901, 929, 933
Asp700I	GAANNNNTTC	1 cut(s)	263
AsuHPI	GGTGA	3 cut(s)	94, 248, 730
BamHI	GGATCC	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	3, 775
BbvCI	CCTCAGC	1 cut(s)	993
BbvI	GCAGC	2 cut(s)	631, 888
BccI	CCATC	5 cut(s)	308, 691, 821, 849, 959
BciT130I	CCWGG	4 cut(s)	234, 312, 504, 921
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	84, 102
BfaI	CTAG	2 cut(s)	362, 936
BisI	GCNGC	2 cut(s)	620, 877
BlsI	GCNGC	2 cut(s)	621, 878
BmcAI	AGTACT	2 cut(s)	204, 1079
Bme1390I	CCNGG	4 cut(s)	234, 312, 504, 921
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	4 cut(s)	234, 312, 504, 921
BmsI	GCATC	2 cut(s)	814, 1032
BpiI	GAAGAC	2 cut(s)	3, 775
Bpu10I	CCTNAGC	1 cut(s)	993
BsaBI	GATNNNNATC	1 cut(s)	1046
BsaJI	CCNNGG	3 cut(s)	52, 848, 920
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 899
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	1046
BseBI	CCWGG	4 cut(s)	234, 312, 504, 921
BseDI	CCNNGG	3 cut(s)	52, 848, 920
BseGI	GGATG	4 cut(s)	433, 702, 1003, 1047
BseJI	GATNNNNATC	1 cut(s)	1046
BseLI	CCNNNNNNNGG	2 cut(s)	421, 899
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	984, 989
BseRI	GAGGAG	1 cut(s)	1051
BseXI	GCAGC	2 cut(s)	631, 888
BshFI	GGCC	3 cut(s)	285, 341, 731
BslI	CCNNNNNNNGG	2 cut(s)	421, 899
BsmAI	GTCTC	2 cut(s)	84, 102
BsnI	GGCC	3 cut(s)	285, 341, 731
Bsp143I	GATC	7 cut(s)	229, 329, 399, 451, 466, 797, 1072
Bsp19I	CCATGG	2 cut(s)	52, 848
BspANI	GGCC	3 cut(s)	285, 341, 731
BspCNI	CTCAG	2 cut(s)	985, 988
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	3 cut(s)	224, 237, 407
BspQI	GCTCTTC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	52, 848, 920
BssMI	GATC	7 cut(s)	229, 329, 399, 451, 466, 797, 1072
BssT1I	CCWWGG	2 cut(s)	52, 848
Bst2UI	CCWGG	4 cut(s)	234, 312, 504, 921
Bst4CI	ACNGT	3 cut(s)	264, 579, 1024
Bst6I	CTCTTC	2 cut(s)	576, 1028
BstC8I	GCNNGC	2 cut(s)	38, 283
BstDEI	CTNAG	3 cut(s)	692, 975, 993
BstDSI	CCRYGG	2 cut(s)	52, 848
BstENI	CCTNNNNNAGG	1 cut(s)	897
BstF5I	GGATG	4 cut(s)	433, 702, 1003, 1047
BstKTI	GATC	7 cut(s)	232, 332, 402, 454, 469, 800, 1075
BstMAI	GTCTC	2 cut(s)	84, 102
BstMBI	GATC	7 cut(s)	229, 329, 399, 451, 466, 797, 1072
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNI	CCWGG	4 cut(s)	234, 312, 504, 921
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	4 cut(s)	232, 310, 502, 919
BstV1I	GCAGC	2 cut(s)	631, 888
BstV2I	GAAGAC	2 cut(s)	3, 775
BstX2I	RGATCY	2 cut(s)	229, 399
BstXI	CCANNNNNNTGG	3 cut(s)	639, 774, 855
BstYI	RGATCY	2 cut(s)	229, 399
BsuRI	GGCC	3 cut(s)	285, 341, 731
BtgI	CCRYGG	2 cut(s)	52, 848
BtsCI	GGATG	4 cut(s)	433, 702, 1003, 1047
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	3 cut(s)	564, 807, 1020
Cac8I	GCNNGC	2 cut(s)	38, 283
Csp6I	GTAC	3 cut(s)	203, 518, 1078
CviAII	CATG	8 cut(s)	53, 112, 244, 289, 484, 595, 733, 849
CviQI	GTAC	3 cut(s)	203, 518, 1078
DdeI	CTNAG	3 cut(s)	692, 975, 993
DpnI	GATC	7 cut(s)	231, 331, 401, 453, 468, 799, 1074
DpnII	GATC	7 cut(s)	229, 329, 399, 451, 466, 797, 1072
Eam1104I	CTCTTC	2 cut(s)	576, 1028
EarI	CTCTTC	2 cut(s)	576, 1028
Eco130I	CCWWGG	2 cut(s)	52, 848
EcoNI	CCTNNNNNAGG	1 cut(s)	897
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	4 cut(s)	232, 310, 502, 919
EcoT14I	CCWWGG	2 cut(s)	52, 848
ErhI	CCWWGG	2 cut(s)	52, 848
FaeI	CATG	8 cut(s)	56, 115, 247, 292, 487, 598, 736, 852
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FatI	CATG	8 cut(s)	52, 111, 243, 288, 483, 594, 732, 848
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	620, 877
FokI	GGATG	4 cut(s)	440, 709, 1010, 1054
Fsp4HI	GCNGC	2 cut(s)	620, 877
FspBI	CTAG	2 cut(s)	362, 936
GluI	GCNGC	2 cut(s)	620, 877
HaeIII	GGCC	3 cut(s)	285, 341, 731
Hin1II	CATG	8 cut(s)	56, 115, 247, 292, 487, 598, 736, 852
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HindIII	AAGCTT	2 cut(s)	34, 945
HinfI	GANTC	6 cut(s)	48, 57, 131, 512, 532, 557
HpaI	GTTAAC	1 cut(s)	582
HphI	GGTGA	3 cut(s)	94, 248, 730
Hpy166II	GTNNAC	4 cut(s)	320, 582, 905, 1012
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	4 cut(s)	173, 227, 367, 809
Hpy8I	GTNNAC	4 cut(s)	320, 582, 905, 1012
HpyAV	CCTTC	4 cut(s)	167, 580, 721, 1059
HpyCH4III	ACNGT	3 cut(s)	264, 579, 1024
HpyCH4V	TGCA	6 cut(s)	40, 115, 194, 476, 539, 805
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	3 cut(s)	692, 975, 993
Hsp92II	CATG	8 cut(s)	56, 115, 247, 292, 487, 598, 736, 852
Ksp22I	TGATCA	1 cut(s)	451
KspAI	GTTAAC	1 cut(s)	582
Kzo9I	GATC	7 cut(s)	229, 329, 399, 451, 466, 797, 1072
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	2 cut(s)	631, 888
LweI	GCATC	2 cut(s)	814, 1032
MaeI	CTAG	2 cut(s)	362, 936
MaeIII	GTNAC	1 cut(s)	881
MalI	GATC	7 cut(s)	231, 331, 401, 453, 468, 799, 1074
MboI	GATC	7 cut(s)	229, 329, 399, 451, 466, 797, 1072
MboII	GAAGA	7 cut(s)	3, 57, 358, 563, 775, 946, 1045
MfeI	CAATTG	1 cut(s)	1005
MflI	RGATCY	2 cut(s)	229, 399
MluCI	AATT	4 cut(s)	272, 372, 455, 1005
MlyI	GAGTC	2 cut(s)	51, 526
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	9 cut(s)	98, 232, 296, 502, 717, 893, 988, 1029, 1032
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	4 cut(s)	75, 458, 581, 602
MslI	CAYNNNNRTG	2 cut(s)	810, 853
MspA1I	CMGCKG	1 cut(s)	879
MspR9I	CCNGG	4 cut(s)	234, 312, 504, 921
MunI	CAATTG	1 cut(s)	1005
MvaI	CCWGG	4 cut(s)	234, 312, 504, 921
MwoI	GCNNNNNNNGC	1 cut(s)	628
NcoI	CCATGG	2 cut(s)	52, 848
NdeII	GATC	7 cut(s)	229, 329, 399, 451, 466, 797, 1072
NlaIII	CATG	8 cut(s)	56, 115, 247, 292, 487, 598, 736, 852
NlaIV	GGNNCC	1 cut(s)	231
NspI	RCATGY	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	4 cut(s)	48, 131, 512, 557
PflFI	GACNNNGTC	1 cut(s)	915
PflMI	CCANNNNNTGG	1 cut(s)	421
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	621, 878
PleI	GAGTC	2 cut(s)	51, 526
PpsI	GAGTC	2 cut(s)	51, 526
Psp6I	CCWGG	4 cut(s)	232, 310, 502, 919
PspGI	CCWGG	4 cut(s)	232, 310, 502, 919
PspN4I	GGNNCC	1 cut(s)	231
PsuI	RGATCY	2 cut(s)	229, 399
PsyI	GACNNNGTC	1 cut(s)	915
PvuII	CAGCTG	1 cut(s)	879
RsaI	GTAC	3 cut(s)	204, 519, 1079
RsaNI	GTAC	3 cut(s)	203, 518, 1078
RseI	CAYNNNNRTG	2 cut(s)	810, 853
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	4 cut(s)	75, 458, 581, 602
SatI	GCNGC	2 cut(s)	620, 877
Sau3AI	GATC	7 cut(s)	229, 329, 399, 451, 466, 797, 1072
ScaI	AGTACT	2 cut(s)	204, 1079
SchI	GAGTC	2 cut(s)	51, 526
ScrFI	CCNGG	4 cut(s)	234, 312, 504, 921
SfaNI	GCATC	2 cut(s)	814, 1032
SmiMI	CAYNNNNRTG	2 cut(s)	810, 853
Sse9I	AATT	4 cut(s)	272, 372, 455, 1005
SspI	AATATT	2 cut(s)	190, 307
SspMI	CTAG	2 cut(s)	362, 936
StyD4I	CCNGG	4 cut(s)	232, 310, 502, 919
StyI	CCWWGG	2 cut(s)	52, 848
TaaI	ACNGT	3 cut(s)	264, 579, 1024
TaqI	TCGA	1 cut(s)	1071
TasI	AATT	4 cut(s)	272, 372, 455, 1005
TatI	WGTACW	2 cut(s)	202, 1077
TfiI	GAWTC	4 cut(s)	48, 131, 512, 557
Tru1I	TTAA	4 cut(s)	75, 458, 581, 602
Tru9I	TTAA	4 cut(s)	75, 458, 581, 602
TscAI	CASTG	3 cut(s)	571, 807, 1027
TseI	GCWGC	2 cut(s)	619, 876
TspDTI	ATGAA	5 cut(s)	157, 192, 265, 749, 1046
TspRI	CASTG	3 cut(s)	571, 807, 1027
Tth111I	GACNNNGTC	1 cut(s)	915
Van91I	CCANNNNNTGG	1 cut(s)	421
XagI	CCTNNNNNAGG	1 cut(s)	897
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	2 cut(s)	362, 936
ZrmI	AGTACT	2 cut(s)	204, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.