Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005960

Physical Location & Seq

Genomic Coordinates Forward (+)

21738160 .. 21742517

Gene Structure 4358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGGAAGGTGGGAGTAGTCACGACGCAGAGAGTAGCAAGAAACTAGGGAGAGGGAAAATAGAGATAAAGAGGATAGAGAACACAACAAATCGTCAAGTTACTTTCTGCAAACGACGCAATGGTCTTCTCAAGAAAGCTTATGAACTCTCTGTCTTGTGTGATGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAACAGTGTGAGGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAACCCTCCTTCCGTCACCGAAGCTAATACTCAGTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGATTCGAGATATTCAGAATTCAAATAGGCATATTGTTGGGGAATCACTTGGTTCCTTGAACTTCAAGGAACTCAAAAACCTAGAAGGACGTCTTGAAAAAGGAATCAGCCGTGTCCGCTCCAAAAAGAATGAGCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGGGAAATGGAGTTGCAACACAATAACATGTACCTGCGAGCAAAGATAGCCGAAGGCGCCAGATTGAATCCGGACCAGCAGGAATCGAGTGTGATACAAGGGACGACAGTTTACGAATCCGGTGTATCTTCTCATGACCAGTCGCAGCATTATAATCGGAACTATATTCCGGTGAACCTTCTTGAACCGAATCAGCAATTCTCCGGCCAAGACCAACCTCCTCTTCAACTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010097 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048467 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

248

Amino Acids

28.34

Weight (kDa)

9.12

Isoelectric Point (pI)

55.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	25 - 72	3.9e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	93 - 179	2.8e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42830 AT2G42830 AT3G58780 AT3G58780 AT3G58780 AT3G58780 AT3G58780
fragaria_vesca	FvH4_6g37880 FvH4_6g37880 FvH4_6g37880
malus_domestica	MD09G1155200.v1.1 MD17G1141300.v1.1
prunus_persica	Prupe.3G170600_v2.0.a1
pyrus_communis	pycom09g07400 pycom17g13470
rosa_chinensis	RchiOBHm_Chr2g0151031
rosa_laevigata	RLG00000020525
rosa_multiflora	Rmu_sc0000185.1_g000040
rosa_roxburghii	Rroxscaffold_2G00096750
rosa_rugosa	Rorug02G0423600 Rorug02G0423600 Rorug02G0423700 Rorug02G0423800 Rorug02G0423900 Rorug02G0424000
rosa_samantha	Rh2CG470800
rosa_wichuraiana	Rw2G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AasI	GACNNNNNNGTC	1 cut(s)	123
AatII	GACGTC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	566
AccBSI	CCGCTC	1 cut(s)	462
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	1 cut(s)	460
AcoI	YGGCCR	2 cut(s)	199, 715
AcsI	RAATTY	1 cut(s)	361
AcyI	GRCGYC	2 cut(s)	433, 567
AfaI	GTAC	5 cut(s)	215, 238, 251, 311, 542
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	8 cut(s)	245, 366, 403, 409, 440, 577, 695, 737
AjuI	GAANNNNNNNTTGG	1 cut(s)	717
AluBI	AGCT	5 cut(s)	140, 260, 299, 334, 478
AluI	AGCT	5 cut(s)	140, 260, 299, 334, 478
Alw26I	GTCTC	1 cut(s)	209
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	2 cut(s)	199, 715
ApeKI	GCWGC	1 cut(s)	655
ApoI	RAATTY	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	1 cut(s)	583
AsuHPI	GGTGA	2 cut(s)	283, 694
AvaII	GGWCC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	566
BauI	CACGAG	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	667
BceAI	ACGGC	3 cut(s)	186, 257, 438
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	47, 425
BfoI	RGCGCY	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	552
BisI	GCNGC	1 cut(s)	656
BlsI	GCNGC	1 cut(s)	657
BmcAI	AGTACT	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	397, 568
BmsI	GCATC	2 cut(s)	154, 259
BpiI	GAAGAC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	116
BsaHI	GRCGYC	2 cut(s)	433, 567
BsaWI	WCCGGW	3 cut(s)	580, 629, 679
Bse1I	ACTGG	1 cut(s)	649
Bse3DI	GCAATG	1 cut(s)	127
BseAI	TCCGGA	1 cut(s)	580
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	1 cut(s)	720
BseXI	GCAGC	1 cut(s)	667
BshFI	GGCC	2 cut(s)	201, 717
BshNI	GGYRCC	1 cut(s)	566
BsiSI	CCGG	4 cut(s)	581, 630, 680, 714
BslFI	GGGAC	1 cut(s)	625
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	625
BsnI	GGCC	2 cut(s)	201, 717
Bsp13I	TCCGGA	1 cut(s)	580
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	2 cut(s)	201, 717
BspCNI	CTCAG	1 cut(s)	319
BspEI	TCCGGA	1 cut(s)	580
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	397, 568
BspMI	ACCTGC	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	566
BsrBI	CCGCTC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	649
BssNI	GRCGYC	2 cut(s)	433, 567
BssSI	CACGAG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	227, 619
Bst6I	CTCTTC	2 cut(s)	503, 738
BstACI	GRCGYC	2 cut(s)	433, 567
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	2 cut(s)	306, 330
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	569
BstMAI	GTCTC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 173, 340, 459, 557, 566
BstNSI	RCATGY	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	201, 717
BtsIMutI	CAGTG	1 cut(s)	232
BveI	ACCTGC	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	549
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	583
CseI	GACGC	2 cut(s)	35, 126
Csp6I	GTAC	5 cut(s)	214, 237, 250, 310, 541
CviAII	CATG	2 cut(s)	538, 644
CviQI	GTAC	5 cut(s)	214, 237, 250, 310, 541
DdeI	CTNAG	2 cut(s)	306, 330
DinI	GGCGCC	1 cut(s)	568
DrdI	GACNNNNNNGTC	1 cut(s)	123
DseDI	GACNNNNNNGTC	1 cut(s)	123
EaeI	YGGCCR	2 cut(s)	199, 715
Eam1104I	CTCTTC	2 cut(s)	503, 738
EarI	CTCTTC	2 cut(s)	503, 738
Eco47I	GGWCC	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	361
EgeI	GGCGCC	1 cut(s)	568
EheI	GGCGCC	1 cut(s)	568
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	2 cut(s)	541, 647
FaiI	YATR	9 cut(s)	144, 210, 375, 501, 503, 539, 645, 663, 675
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	2 cut(s)	537, 643
Fnu4HI	GCNGC	1 cut(s)	656
Fsp4HI	GCNGC	1 cut(s)	656
FspBI	CTAG	2 cut(s)	47, 425
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	1 cut(s)	656
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	2 cut(s)	201, 717
HapII	CCGG	4 cut(s)	581, 630, 680, 714
HgaI	GACGC	2 cut(s)	35, 126
HhaI	GCGC	1 cut(s)	569
Hin1I	GRCGYC	2 cut(s)	433, 567
Hin1II	CATG	2 cut(s)	541, 647
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	3 cut(s)	138, 258, 332
HinfI	GANTC	7 cut(s)	346, 386, 447, 577, 593, 626, 700
HpaII	CCGG	4 cut(s)	581, 630, 680, 714
HphI	GGTGA	2 cut(s)	283, 694
Hpy166II	GTNNAC	3 cut(s)	277, 622, 685
Hpy188I	TCNGA	4 cut(s)	268, 339, 360, 669
Hpy188III	TCNNGA	7 cut(s)	23, 133, 350, 437, 581, 644, 692
Hpy8I	GTNNAC	3 cut(s)	277, 622, 685
Hpy99I	CGWCG	2 cut(s)	29, 120
HpyAV	CCTTC	4 cut(s)	294, 422, 557, 698
HpyCH4III	ACNGT	2 cut(s)	227, 619
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	3 cut(s)	111, 505, 526
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 173, 340, 459, 557, 566
HpyF3I	CTNAG	2 cut(s)	306, 330
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	2 cut(s)	433, 567
Hsp92II	CATG	2 cut(s)	541, 647
HspAI	GCGC	1 cut(s)	567
KasI	GGCGCC	1 cut(s)	566
Kpn2I	TCCGGA	1 cut(s)	580
LmnI	GCTCC	1 cut(s)	467
LpnPI	CCDG	9 cut(s)	557, 575, 583, 594, 599, 643, 662, 693, 727
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	2 cut(s)	154, 259
MaeI	CTAG	2 cut(s)	47, 425
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	3 cut(s)	20, 100, 289
MbiI	CCGCTC	1 cut(s)	462
MboII	GAAGA	5 cut(s)	119, 178, 520, 630, 725
MfeI	CAATTG	1 cut(s)	240
MluCI	AATT	3 cut(s)	240, 361, 707
Mly113I	GGCGCC	1 cut(s)	567
MroI	TCCGGA	1 cut(s)	580
MspI	CCGG	4 cut(s)	581, 630, 680, 714
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	6 cut(s)	117, 173, 340, 459, 557, 566
NarI	GGCGCC	1 cut(s)	567
NlaIII	CATG	2 cut(s)	541, 647
NlaIV	GGNNCC	2 cut(s)	397, 568
NmuCI	GTSAC	2 cut(s)	20, 289
NspI	RCATGY	1 cut(s)	541
PagI	TCATGA	1 cut(s)	643
PciI	ACATGT	1 cut(s)	537
PfeI	GAWTC	7 cut(s)	346, 386, 447, 577, 593, 626, 700
PkrI	GCNGC	1 cut(s)	657
PluTI	GGCGCC	1 cut(s)	570
PscI	ACATGT	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	397, 568
PspPI	GGNCC	1 cut(s)	583
RsaI	GTAC	5 cut(s)	215, 238, 251, 311, 542
RsaNI	GTAC	5 cut(s)	214, 237, 250, 310, 541
SatI	GCNGC	1 cut(s)	656
Sau96I	GGNCC	1 cut(s)	583
ScaI	AGTACT	1 cut(s)	311
SfaNI	GCATC	2 cut(s)	154, 259
SfoI	GGCGCC	1 cut(s)	568
SinI	GGWCC	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	240, 361, 707
SsiI	CCGC	1 cut(s)	460
SspDI	GGCGCC	1 cut(s)	566
SspMI	CTAG	2 cut(s)	47, 425
TaaI	ACNGT	2 cut(s)	227, 619
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	349, 596
TasI	AATT	3 cut(s)	240, 361, 707
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	7 cut(s)	346, 386, 447, 577, 593, 626, 700
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	20, 289
TseI	GCWGC	1 cut(s)	655
Tsp45I	GTSAC	2 cut(s)	20, 289
TspDTI	ATGAA	1 cut(s)	159
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	541
XspI	CTAG	2 cut(s)	47, 425
ZraI	GACGTC	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.