Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005960

Physical Location & Seq

Genomic Coordinates Forward (+)

65949290 .. 65956452

Gene Structure 7163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020525

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGTTCCCAAAACAAATTACACCAGCTGATGATCCTGAGAGCTCTTCCCAAAAGAAATTGGGAAGAGGGAAAATCGAGATCAAGAGGATCGAAAACACTACCAATCGACAAGTCACATTCTGCAAGCGCCGCAACGGTTTGCTTAAGAAAGCATATGAACTATCTGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTTTTCTCTACCCGGGGGCGCCTCTATGAATATGCTAACAACAGTGTTAGAGCAACAATCGAAAGGTATAAGAAAGCATGTGATTCTGCAAACACTGGATCTGTAACTGAGGCTAATGTTCAGTTTTATCAGCAAGAAGCCTCCAAACTAAGAAGACAGATCAGAGAAATTCAGAATTCAAACAGAATCTCAACTGACATTTTCCAATATATATGTTCCCAGAATGAAATGCTGTTTGCTGAAATCGAATATATGCAAAAGAGGGAGATCGAGCTGCAAAATCATAACAATTTTCTGAGAGCAAAGATTGCTGAAAATGACAGGGCACAACAGCAGCAAGCAAATATGATGCCAGGAACATCATCTGCGTATGATCAATCAATGCCTCCTCCTCAATCATACGATAGGAGCTTTCTCCCTGTAATCCTTGAGTCCAATCACCACTACAATCGCCAAGGGCAGAACCAGACACCTCTCCAACTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

229

Amino Acids

26.41

Weight (kDa)

8.99

Isoelectric Point (pI)

71.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	30 - 77	1.8e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42830 AT2G42830 AT3G58780 AT3G58780 AT3G58780 AT3G58780 AT3G58780
fragaria_vesca	FvH4_6g37880 FvH4_6g37880 FvH4_6g37880
malus_domestica	MD09G1155200.v1.1 MD17G1141300.v1.1
prunus_persica	Prupe.3G170600_v2.0.a1
pyrus_communis	pycom09g07400 pycom17g13470
rosa_chinensis	RchiOBHm_Chr2g0151031
rosa_laevigata	RLG00000020525
rosa_multiflora	Rmu_sc0000185.1_g000040
rosa_roxburghii	Rroxscaffold_2G00096750
rosa_rugosa	Rorug02G0423600 Rorug02G0423600 Rorug02G0423700 Rorug02G0423800 Rorug02G0423900 Rorug02G0424000
rosa_samantha	Rh2CG470800
rosa_wichuraiana	Rw2G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	3 cut(s)	29, 98, 304
AcsI	RAATTY	2 cut(s)	366, 373
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	378
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	4 cut(s)	29, 45, 472, 609
AluI	AGCT	4 cut(s)	29, 45, 472, 609
Alw21I	GWGCWC	1 cut(s)	47
AlwI	GGATC	3 cut(s)	29, 98, 304
Ama87I	CYCGRG	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	472, 532
ApoI	RAATTY	2 cut(s)	366, 373
AspLEI	GCGC	2 cut(s)	132, 219
AsuC2I	CCSGG	2 cut(s)	211, 212
AsuHPI	GGTGA	1 cut(s)	629
AvaI	CYCGRG	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	526
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	459, 544
BciT130I	CCWGG	1 cut(s)	552
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	2 cut(s)	211, 212
BfoI	RGCGCY	2 cut(s)	133, 220
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	3 cut(s)	133, 473, 533
BlsI	GCNGC	3 cut(s)	134, 474, 534
Bme1390I	CCNGG	3 cut(s)	211, 212, 552
BmeT110I	CYCGRG	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	3 cut(s)	211, 212, 552
BmsI	GCATC	2 cut(s)	169, 537
BpiI	GAAGAC	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	2 cut(s)	211, 212
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	210, 211, 652
Bse1I	ACTGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	3 cut(s)	210, 211, 652
BseMII	CTCAG	3 cut(s)	30, 297, 485
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	576, 579
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	2 cut(s)	459, 544
BshNI	GGYRCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	47
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	47, 526
Bsp143I	GATC	7 cut(s)	34, 81, 90, 296, 357, 465, 571
BspACI	CCGC	1 cut(s)	133
BspCNI	CTCAG	3 cut(s)	31, 298, 486
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	3 cut(s)	29, 98, 304
BspQI	GCTCTTC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	210, 211, 652
BssMI	GATC	7 cut(s)	34, 81, 90, 296, 357, 465, 571
BssNI	GRCGYC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	2 cut(s)	140, 242
Bst6I	CTCTTC	2 cut(s)	52, 61
BstACI	GRCGYC	1 cut(s)	217
BstAFI	CTTAAG	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	128, 537
BstDEI	CTNAG	4 cut(s)	39, 306, 347, 494
BstH2I	RGCGCY	2 cut(s)	133, 220
BstHHI	GCGC	2 cut(s)	132, 219
BstKTI	GATC	7 cut(s)	37, 84, 93, 299, 360, 468, 574
BstMBI	GATC	7 cut(s)	34, 81, 90, 296, 357, 465, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 188, 506
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	3 cut(s)	209, 210, 550
BstSLI	GKGCMC	1 cut(s)	526
BstV1I	GCAGC	2 cut(s)	459, 544
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	247, 291
Cac8I	GCNNGC	2 cut(s)	128, 537
CfoI	GCGC	2 cut(s)	132, 219
Cfr9I	CCCGGG	1 cut(s)	210
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	6 cut(s)	29, 45, 311, 338, 472, 609
CviKI_1	RGCY	6 cut(s)	29, 45, 311, 338, 472, 609
DdeI	CTNAG	4 cut(s)	39, 306, 347, 494
DinI	GGCGCC	1 cut(s)	218
DpnI	GATC	7 cut(s)	36, 83, 92, 298, 359, 467, 573
DpnII	GATC	7 cut(s)	34, 81, 90, 296, 357, 465, 571
Eam1104I	CTCTTC	2 cut(s)	52, 61
EarI	CTCTTC	2 cut(s)	52, 61
Ecl136II	GAGCTC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	652
Eco24I	GRGCYC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	47
EgeI	GGCGCC	1 cut(s)	218
EheI	GGCGCC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	1 cut(s)	279
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	1 cut(s)	275
FauNDI	CATATG	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	133, 473, 533
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	3 cut(s)	133, 473, 533
GlaI	GCGC	2 cut(s)	131, 218
GluI	GCNGC	3 cut(s)	133, 473, 533
HaeII	RGCGCY	2 cut(s)	133, 220
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	2 cut(s)	132, 219
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	1 cut(s)	279
Hin6I	GCGC	2 cut(s)	130, 217
HinP1I	GCGC	2 cut(s)	130, 217
HinfI	GANTC	3 cut(s)	281, 384, 629
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	1 cut(s)	629
Hpy188I	TCNGA	3 cut(s)	362, 372, 495
Hpy188III	TCNNGA	3 cut(s)	38, 79, 85
HpyCH4III	ACNGT	2 cut(s)	140, 242
HpyCH4V	TGCA	4 cut(s)	126, 287, 454, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 188, 506
HpyF3I	CTNAG	4 cut(s)	39, 306, 347, 494
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	279
HspAI	GCGC	2 cut(s)	130, 217
KasI	GGCGCC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	7 cut(s)	34, 81, 90, 296, 357, 465, 571
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	606
Lsp1109I	GCAGC	2 cut(s)	459, 544
LweI	GCATC	2 cut(s)	169, 537
MaeIII	GTNAC	2 cut(s)	115, 301
MalI	GATC	7 cut(s)	36, 83, 92, 298, 359, 467, 573
MboI	GATC	7 cut(s)	34, 81, 90, 296, 357, 465, 571
MboII	GAAGA	3 cut(s)	39, 78, 363
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	47, 526
MluCI	AATT	5 cut(s)	18, 59, 366, 373, 487
Mly113I	GGCGCC	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	638
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	3 cut(s)	211, 212, 552
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	3 cut(s)	132, 188, 506
NarI	GGCGCC	1 cut(s)	217
NciI	CCSGG	2 cut(s)	211, 212
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	7 cut(s)	34, 81, 90, 296, 357, 465, 571
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	281, 384
PkrI	GCNGC	3 cut(s)	134, 474, 534
PleI	GAGTC	1 cut(s)	637
PluTI	GGCGCC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	637
Psp124BI	GAGCTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	133, 473, 533
Sau3AI	GATC	7 cut(s)	34, 81, 90, 296, 357, 465, 571
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	3 cut(s)	211, 212, 552
SduI	GDGCHC	2 cut(s)	47, 526
SetI	ASST	6 cut(s)	31, 47, 266, 474, 611, 673
SfaNI	GCATC	2 cut(s)	169, 537
SfoI	GGCGCC	1 cut(s)	218
SmaI	CCCGGG	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	146, 626
SmoI	CTYRAG	2 cut(s)	146, 626
Sse9I	AATT	5 cut(s)	18, 59, 366, 373, 487
SsiI	CCGC	1 cut(s)	133
SspDI	GGCGCC	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	209, 210, 550
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	2 cut(s)	140, 242
TaqI	TCGA	6 cut(s)	78, 93, 109, 258, 444, 468
TasI	AATT	5 cut(s)	18, 59, 366, 373, 487
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	281, 384
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	247, 298
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	472, 532
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	174, 240, 438
TspMI	CCCGGG	1 cut(s)	210
TspRI	CASTG	2 cut(s)	247, 298
Vha464I	CTTAAG	1 cut(s)	146
XapI	RAATTY	2 cut(s)	366, 373
XceI	RCATGY	1 cut(s)	279
XmaI	CCCGGG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.