Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005960

Physical Location & Seq

Genomic Coordinates Forward (+)

18936128 .. 18943063

Gene Structure 6936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G170600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGTTCCCAAATCAAGCACCTGAGAGCTCTTCCCAAAGAAAAATTGGAAGAGGCAAGATTGAGATTAAGCGGATCGAAAACACTACAAATCGACAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTTAAGAAAGCCTATGAGTTATCTGTTCTGTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCTACCCGTGGCCGCCTGTATGAGTATGCTAACAACAGCGTTAGAGCAACGATTGATAGGTACAAAAAAGCATGTACTGATTCTACGAATGGTGGATCTGTTTCTGAAGCTAACACTCAGTTTTATCAGCAGGAATCATCTAAATTACGAAGACAGATTCGCGAAATCCAGAACTCAAACAGGCATATACTGGGTGAAGCTCTTAGCACTTTGAACATCAAGGAACTCAAGAACCTAGAAGGAAGACTGGAGAAAGGGATCAGCAGGATAAGATCCAAAAAGAACGAAATGCTGTTTGCTGAAATCGAATTTATGCAAAAGAGGGAGATGGAGCTGCAAAACCATAACAATTATCTGAGAGCAAAGATAGCTGAAAATGAGAGGGCACAACAGCAGCAAACAAATATGATTCAAGGAACTTCTTATGATCAGTCAATGCCTTCACAGTCATACGACAGGAACTTCCTCCCTGTAATCTTGGAGGCGAATAATAATAATAATAACCATTACTCTCGCCATGACCAGACAGCTCTCCAACTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

245

Amino Acids

28.31

Weight (kDa)

9.55

Isoelectric Point (pI)

63.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42830 AT2G42830 AT3G58780 AT3G58780 AT3G58780 AT3G58780 AT3G58780
fragaria_vesca	FvH4_6g37880 FvH4_6g37880 FvH4_6g37880
malus_domestica	MD09G1155200.v1.1 MD17G1141300.v1.1
prunus_persica	Prupe.3G170600_v2.0.a1
pyrus_communis	pycom09g07400 pycom17g13470
rosa_chinensis	RchiOBHm_Chr2g0151031
rosa_laevigata	RLG00000020525
rosa_multiflora	Rmu_sc0000185.1_g000040
rosa_roxburghii	Rroxscaffold_2G00096750
rosa_rugosa	Rorug02G0423600 Rorug02G0423600 Rorug02G0423700 Rorug02G0423800 Rorug02G0423900 Rorug02G0424000
rosa_samantha	Rh2CG470800
rosa_wichuraiana	Rw2G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	351
AciI	CCGC	3 cut(s)	73, 118, 202
AclWI	GGATC	4 cut(s)	83, 292, 455, 456
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	2 cut(s)	189, 315
AfaI	GTAC	2 cut(s)	251, 265
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	403, 602
AluBI	AGCT	6 cut(s)	30, 299, 389, 523, 560, 719
AluI	AGCT	6 cut(s)	30, 299, 389, 523, 560, 719
Alw21I	GWGCWC	1 cut(s)	32
AlwI	GGATC	4 cut(s)	83, 292, 455, 456
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	523, 583
ApoI	RAATTY	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	94, 395
BaeGI	GKGCMC	1 cut(s)	577
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	3 cut(s)	178, 346, 439
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	510, 595
BccI	CCATC	1 cut(s)	511
BclI	TGATCA	1 cut(s)	616
BfaI	CTAG	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	118
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	4 cut(s)	118, 202, 524, 584
BlsI	GCNGC	4 cut(s)	119, 203, 525, 585
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	389
BpiI	GAAGAC	3 cut(s)	178, 346, 439
BpmI	CTGGAG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	384, 441
BseDI	CCNNGG	1 cut(s)	196
BseMII	CTCAG	3 cut(s)	15, 320, 536
BseNI	ACTGG	2 cut(s)	384, 441
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	2 cut(s)	510, 595
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	32, 577
Bsp143I	GATC	5 cut(s)	75, 284, 447, 461, 616
Bsp68I	TCGCGA	1 cut(s)	351
BspACI	CCGC	3 cut(s)	73, 118, 202
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	3 cut(s)	16, 319, 537
BspFNI	CGCG	1 cut(s)	351
BspPI	GGATC	4 cut(s)	83, 292, 455, 456
BspQI	GCTCTTC	1 cut(s)	37
BspTI	CTTAAG	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	384, 441
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	5 cut(s)	75, 284, 447, 461, 616
Bst4CI	ACNGT	2 cut(s)	125, 636
Bst6I	CTCTTC	2 cut(s)	37, 46
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	4 cut(s)	24, 306, 392, 545
BstDSI	CCRYGG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	5 cut(s)	78, 287, 450, 464, 619
BstMBI	GATC	5 cut(s)	75, 284, 447, 461, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 173, 557
BstNSI	RCATGY	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	577
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	510, 595
BstV2I	GAAGAC	3 cut(s)	178, 346, 439
BstX2I	RGATCY	2 cut(s)	284, 461
BstYI	RGATCY	2 cut(s)	284, 461
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	196
BtuMI	TCGCGA	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	250, 264
CviAII	CATG	2 cut(s)	261, 707
CviJI	RGCY	8 cut(s)	30, 140, 201, 299, 389, 523, 560, 719
CviKI_1	RGCY	8 cut(s)	30, 140, 201, 299, 389, 523, 560, 719
CviQI	GTAC	2 cut(s)	250, 264
DdeI	CTNAG	4 cut(s)	24, 306, 392, 545
DpnI	GATC	5 cut(s)	77, 286, 449, 463, 618
DpnII	GATC	5 cut(s)	75, 284, 447, 461, 616
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	37, 46
EarI	CTCTTC	2 cut(s)	37, 46
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	189, 315
EcoICRI	GAGCTC	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	2 cut(s)	264, 710
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FatI	CATG	2 cut(s)	260, 706
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	4 cut(s)	118, 202, 524, 584
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	4 cut(s)	118, 202, 524, 584
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	4 cut(s)	118, 202, 524, 584
GsuI	CTGGAG	1 cut(s)	458
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	264, 710
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	4 cut(s)	269, 323, 346, 598
HphI	GGTGA	2 cut(s)	94, 395
Hpy188I	TCNGA	2 cut(s)	295, 546
Hpy188III	TCNNGA	3 cut(s)	350, 358, 418
HpyAV	CCTTC	3 cut(s)	115, 422, 639
HpyCH4III	ACNGT	2 cut(s)	125, 636
HpyCH4V	TGCA	3 cut(s)	111, 505, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 173, 557
HpyF3I	CTNAG	4 cut(s)	24, 306, 392, 545
Hsp92II	CATG	2 cut(s)	264, 710
HspAI	GCGC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	75, 284, 447, 461, 616
LguI	GCTCTTC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	2 cut(s)	510, 595
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	5 cut(s)	77, 286, 449, 463, 618
MboI	GATC	5 cut(s)	75, 284, 447, 461, 616
MboII	GAAGA	5 cut(s)	24, 63, 178, 351, 444
MflI	RGATCY	2 cut(s)	284, 461
MhlI	GDGCHC	2 cut(s)	32, 577
MluCI	AATT	4 cut(s)	45, 332, 497, 538
MnlI	CCTC	5 cut(s)	47, 504, 564, 664, 665
MseI	TTAA	2 cut(s)	69, 132
MspCI	CTTAAG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	3 cut(s)	117, 173, 557
NdeII	GATC	5 cut(s)	75, 284, 447, 461, 616
NlaIII	CATG	2 cut(s)	264, 710
NmuCI	GTSAC	1 cut(s)	100
NruI	TCGCGA	1 cut(s)	351
NspI	RCATGY	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	37
PfeI	GAWTC	4 cut(s)	269, 323, 346, 598
PkrI	GCNGC	4 cut(s)	119, 203, 525, 585
Psp124BI	GAGCTC	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	284, 461
RruI	TCGCGA	1 cut(s)	351
RsaI	GTAC	2 cut(s)	251, 265
RsaNI	GTAC	2 cut(s)	250, 264
SacI	GAGCTC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	69, 132
SatI	GCNGC	4 cut(s)	118, 202, 524, 584
Sau3AI	GATC	5 cut(s)	75, 284, 447, 461, 616
SduI	GDGCHC	2 cut(s)	32, 577
SfaNI	GCATC	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	131, 416
SmoI	CTYRAG	2 cut(s)	131, 416
Sse9I	AATT	4 cut(s)	45, 332, 497, 538
SsiI	CCGC	3 cut(s)	73, 118, 202
SspMI	CTAG	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	125, 636
TaqI	TCGA	3 cut(s)	78, 94, 495
TasI	AATT	4 cut(s)	45, 332, 497, 538
TatI	WGTACW	1 cut(s)	263
TauI	GCSGC	2 cut(s)	120, 204
TfiI	GAWTC	4 cut(s)	269, 323, 346, 598
Tru1I	TTAA	2 cut(s)	69, 132
Tru9I	TTAA	2 cut(s)	69, 132
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	523, 583
Tsp45I	GTSAC	1 cut(s)	100
Vha464I	CTTAAG	1 cut(s)	131
XapI	RAATTY	1 cut(s)	497
XceI	RCATGY	1 cut(s)	264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.