Protodermal factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42840 |
| fragaria_vesca | FvH4_6g38100 |
| malus_domestica | MD09G1154000.v1.1 MD17G1140600.v1.1 |
| prunus_persica | Prupe.3G171000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0151161 |
| rosa_laevigata | RLG00000020537 |
| rosa_multiflora | Rmu_co8431777.1_g000001 Rmu_sc0002298.1_g000018 |
| rosa_roxburghii | Rroxscaffold_2G00096690 |
| rosa_rugosa | Rorug02G0425400 |
| rosa_samantha | Rh2AG485900 Rh2BG497800 Rh2CG471700 Rh2DG508700 |
| rosa_wichuraiana | Rw2G039790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 566 |
| AccBSI | CCGCTC | 1 cut(s) | 726 |
| AciI | CCGC | 1 cut(s) | 724 |
| AclWI | GGATC | 3 cut(s) | 461, 680, 725 |
| AcuI | CTGAAG | 1 cut(s) | 689 |
| AfaI | GTAC | 1 cut(s) | 652 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 125, 398, 401, 485, 566, 706 |
| AgsI | TTSAA | 2 cut(s) | 204, 883 |
| AjnI | CCWGG | 4 cut(s) | 469, 517, 526, 676 |
| AluBI | AGCT | 4 cut(s) | 61, 644, 764, 886 |
| AluI | AGCT | 4 cut(s) | 61, 644, 764, 886 |
| Alw21I | GWGCWC | 1 cut(s) | 745 |
| Alw26I | GTCTC | 1 cut(s) | 816 |
| AlwI | GGATC | 3 cut(s) | 461, 680, 725 |
| AoxI | GGCC | 1 cut(s) | 870 |
| ApeKI | GCWGC | 3 cut(s) | 41, 58, 857 |
| AspS9I | GGNCC | 1 cut(s) | 871 |
| AsuHPI | GGTGA | 4 cut(s) | 25, 206, 213, 447 |
| BanII | GRGCYC | 1 cut(s) | 34 |
| Bbv12I | GWGCWC | 1 cut(s) | 745 |
| BbvI | GCAGC | 3 cut(s) | 28, 70, 869 |
| BccI | CCATC | 9 cut(s) | 4, 154, 235, 262, 289, 391, 460, 488, 615 |
| BceAI | ACGGC | 1 cut(s) | 8 |
| BciT130I | CCWGG | 4 cut(s) | 471, 519, 528, 678 |
| BcoDI | GTCTC | 1 cut(s) | 816 |
| BfaI | CTAG | 1 cut(s) | 912 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 29 |
| BisI | GCNGC | 3 cut(s) | 42, 59, 858 |
| BlsI | GCNGC | 3 cut(s) | 43, 60, 859 |
| Bme1390I | CCNGG | 4 cut(s) | 471, 519, 528, 678 |
| BmgT120I | GGNCC | 1 cut(s) | 871 |
| BmrFI | CCNGG | 4 cut(s) | 471, 519, 528, 678 |
| BmrI | ACTGGG | 1 cut(s) | 660 |
| BmsI | GCATC | 1 cut(s) | 85 |
| BmuI | ACTGGG | 1 cut(s) | 660 |
| BpmI | CTGGAG | 1 cut(s) | 604 |
| BpuEI | CTTGAG | 1 cut(s) | 798 |
| BsaI | GGTCTC | 1 cut(s) | 816 |
| BsaJI | CCNNGG | 3 cut(s) | 517, 677, 780 |
| BsaWI | WCCGGW | 1 cut(s) | 433 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 226, 253, 256, 280, 283, 310 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 125, 398, 401, 485, 566, 706 |
| Bse1I | ACTGG | 3 cut(s) | 571, 587, 666 |
| BseBI | CCWGG | 4 cut(s) | 471, 519, 528, 678 |
| BseDI | CCNNGG | 3 cut(s) | 517, 677, 780 |
| BseGI | GGATG | 3 cut(s) | 15, 100, 626 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 125, 398, 401, 485, 566, 706 |
| BseNI | ACTGG | 3 cut(s) | 571, 587, 666 |
| BseRI | GAGGAG | 4 cut(s) | 108, 132, 408, 654 |
| BseXI | GCAGC | 3 cut(s) | 28, 70, 869 |
| BshFI | GGCC | 1 cut(s) | 872 |
| BsiHKAI | GWGCWC | 1 cut(s) | 745 |
| BsiSI | CCGG | 1 cut(s) | 434 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 125, 398, 401, 485, 566, 706 |
| BsmAI | GTCTC | 1 cut(s) | 816 |
| BsmI | GAATGC | 1 cut(s) | 672 |
| BsnI | GGCC | 1 cut(s) | 872 |
| Bso31I | GGTCTC | 1 cut(s) | 816 |
| Bsp1286I | GDGCHC | 2 cut(s) | 34, 745 |
| Bsp143I | GATC | 3 cut(s) | 466, 685, 730 |
| Bsp19I | CCATGG | 1 cut(s) | 780 |
| BspACI | CCGC | 1 cut(s) | 724 |
| BspANI | GGCC | 1 cut(s) | 872 |
| BspPI | GGATC | 3 cut(s) | 461, 680, 725 |
| BspTNI | GGTCTC | 1 cut(s) | 816 |
| BsrBI | CCGCTC | 1 cut(s) | 726 |
| BsrI | ACTGG | 3 cut(s) | 571, 587, 666 |
| BssECI | CCNNGG | 3 cut(s) | 517, 677, 780 |
| BssMI | GATC | 3 cut(s) | 466, 685, 730 |
| BssT1I | CCWWGG | 1 cut(s) | 780 |
| Bst2UI | CCWGG | 4 cut(s) | 471, 519, 528, 678 |
| Bst4CI | ACNGT | 5 cut(s) | 173, 320, 634, 655, 752 |
| BstC8I | GCNNGC | 3 cut(s) | 614, 870, 888 |
| BstDSI | CCRYGG | 1 cut(s) | 780 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 704 |
| BstF5I | GGATG | 3 cut(s) | 15, 100, 626 |
| BstKTI | GATC | 3 cut(s) | 469, 688, 733 |
| BstMAI | GTCTC | 1 cut(s) | 816 |
| BstMBI | GATC | 3 cut(s) | 466, 685, 730 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 29, 38, 74, 379 |
| BstNI | CCWGG | 4 cut(s) | 471, 519, 528, 678 |
| BstNSI | RCATGY | 1 cut(s) | 576 |
| BstSCI | CCNGG | 4 cut(s) | 469, 517, 526, 676 |
| BstV1I | GCAGC | 3 cut(s) | 28, 70, 869 |
| BsuRI | GGCC | 1 cut(s) | 872 |
| BtgI | CCRYGG | 1 cut(s) | 780 |
| BtsCI | GGATG | 3 cut(s) | 15, 100, 626 |
| BtsIMutI | CAGTG | 1 cut(s) | 564 |
| Cac8I | GCNNGC | 3 cut(s) | 614, 870, 888 |
| Cfr13I | GGNCC | 1 cut(s) | 871 |
| Csp6I | GTAC | 1 cut(s) | 651 |
| CviAII | CATG | 4 cut(s) | 134, 573, 694, 781 |
| CviQI | GTAC | 1 cut(s) | 651 |
| DpnI | GATC | 3 cut(s) | 468, 687, 732 |
| DpnII | GATC | 3 cut(s) | 466, 685, 730 |
| Eco130I | CCWWGG | 1 cut(s) | 780 |
| Eco24I | GRGCYC | 1 cut(s) | 34 |
| Eco31I | GGTCTC | 1 cut(s) | 816 |
| Eco57I | CTGAAG | 1 cut(s) | 689 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 704 |
| EcoRII | CCWGG | 4 cut(s) | 469, 517, 526, 676 |
| EcoT14I | CCWWGG | 1 cut(s) | 780 |
| EcoT38I | GRGCYC | 1 cut(s) | 34 |
| ErhI | CCWWGG | 1 cut(s) | 780 |
| FaeI | CATG | 4 cut(s) | 137, 576, 697, 784 |
| FaiI | YATR | 9 cut(s) | 106, 135, 234, 574, 607, 695, 782, 792, 876 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 169, 201, 316, 348 |
| FatI | CATG | 4 cut(s) | 133, 572, 693, 780 |
| FauI | CCCGC | 1 cut(s) | 731 |
| Fnu4HI | GCNGC | 3 cut(s) | 42, 59, 858 |
| FokI | GGATG | 3 cut(s) | 22, 107, 633 |
| FriOI | GRGCYC | 1 cut(s) | 34 |
| Fsp4HI | GCNGC | 3 cut(s) | 42, 59, 858 |
| FspBI | CTAG | 1 cut(s) | 912 |
| GluI | GCNGC | 3 cut(s) | 42, 59, 858 |
| GsuI | CTGGAG | 1 cut(s) | 604 |
| HaeIII | GGCC | 1 cut(s) | 872 |
| HapII | CCGG | 1 cut(s) | 434 |
| Hin1II | CATG | 4 cut(s) | 137, 576, 697, 784 |
| HincII | GTYRAC | 1 cut(s) | 787 |
| HindII | GTYRAC | 1 cut(s) | 787 |
| HindIII | AAGCTT | 1 cut(s) | 884 |
| HinfI | GANTC | 2 cut(s) | 445, 915 |
| HpaII | CCGG | 1 cut(s) | 434 |
| HphI | GGTGA | 4 cut(s) | 25, 206, 213, 447 |
| Hpy166II | GTNNAC | 3 cut(s) | 182, 329, 787 |
| Hpy188I | TCNGA | 2 cut(s) | 730, 920 |
| Hpy8I | GTNNAC | 3 cut(s) | 182, 329, 787 |
| HpyCH4III | ACNGT | 5 cut(s) | 173, 320, 634, 655, 752 |
| HpyCH4V | TGCA | 1 cut(s) | 836 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 29, 38, 74, 379 |
| Hsp92II | CATG | 4 cut(s) | 137, 576, 697, 784 |
| Kzo9I | GATC | 3 cut(s) | 466, 685, 730 |
| LmnI | GCTCC | 2 cut(s) | 553, 641 |
| Lsp1109I | GCAGC | 3 cut(s) | 28, 70, 869 |
| LweI | GCATC | 1 cut(s) | 85 |
| MaeI | CTAG | 1 cut(s) | 912 |
| MaeIII | GTNAC | 2 cut(s) | 314, 442 |
| MalI | GATC | 3 cut(s) | 468, 687, 732 |
| MbiI | CCGCTC | 1 cut(s) | 726 |
| MboI | GATC | 3 cut(s) | 466, 685, 730 |
| MboII | GAAGA | 2 cut(s) | 156, 695 |
| MhlI | GDGCHC | 2 cut(s) | 34, 745 |
| MlyI | GAGTC | 1 cut(s) | 439 |
| MmeI | TCCRAC | 4 cut(s) | 263, 290, 616, 741 |
| MseI | TTAA | 1 cut(s) | 773 |
| MslI | CAYNNNNRTG | 1 cut(s) | 604 |
| MspI | CCGG | 1 cut(s) | 434 |
| MspR9I | CCNGG | 4 cut(s) | 471, 519, 528, 678 |
| Mva1269I | GAATGC | 1 cut(s) | 672 |
| MvaI | CCWGG | 4 cut(s) | 471, 519, 528, 678 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 29, 38, 74, 379 |
| NcoI | CCATGG | 1 cut(s) | 780 |
| NdeII | GATC | 3 cut(s) | 466, 685, 730 |
| NlaIII | CATG | 4 cut(s) | 137, 576, 697, 784 |
| NmuCI | GTSAC | 1 cut(s) | 442 |
| NspI | RCATGY | 1 cut(s) | 576 |
| PctI | GAATGC | 1 cut(s) | 672 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 566 |
| PfoI | TCCNGGA | 1 cut(s) | 526 |
| PkrI | GCNGC | 3 cut(s) | 43, 60, 859 |
| PleI | GAGTC | 1 cut(s) | 439 |
| PpsI | GAGTC | 1 cut(s) | 439 |
| Psp6I | CCWGG | 4 cut(s) | 469, 517, 526, 676 |
| PspGI | CCWGG | 4 cut(s) | 469, 517, 526, 676 |
| PspPI | GGNCC | 1 cut(s) | 871 |
| RsaI | GTAC | 1 cut(s) | 652 |
| RsaNI | GTAC | 1 cut(s) | 651 |
| RseI | CAYNNNNRTG | 1 cut(s) | 604 |
| SaqAI | TTAA | 1 cut(s) | 773 |
| SatI | GCNGC | 3 cut(s) | 42, 59, 858 |
| Sau3AI | GATC | 3 cut(s) | 466, 685, 730 |
| Sau96I | GGNCC | 1 cut(s) | 871 |
| SchI | GAGTC | 1 cut(s) | 439 |
| ScrFI | CCNGG | 4 cut(s) | 471, 519, 528, 678 |
| SduI | GDGCHC | 2 cut(s) | 34, 745 |
| SfaNI | GCATC | 1 cut(s) | 85 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 604 |
| SmlI | CTYRAG | 1 cut(s) | 813 |
| SmoI | CTYRAG | 1 cut(s) | 813 |
| SsiI | CCGC | 1 cut(s) | 724 |
| SspMI | CTAG | 1 cut(s) | 912 |
| StyD4I | CCNGG | 4 cut(s) | 469, 517, 526, 676 |
| StyI | CCWWGG | 1 cut(s) | 780 |
| TaaI | ACNGT | 5 cut(s) | 173, 320, 634, 655, 752 |
| Tru1I | TTAA | 1 cut(s) | 773 |
| Tru9I | TTAA | 1 cut(s) | 773 |
| TscAI | CASTG | 1 cut(s) | 571 |
| TseFI | GTSAC | 1 cut(s) | 442 |
| TseI | GCWGC | 3 cut(s) | 41, 58, 857 |
| Tsp45I | GTSAC | 1 cut(s) | 442 |
| TspDTI | ATGAA | 3 cut(s) | 529, 710, 909 |
| TspGWI | ACGGA | 1 cut(s) | 70 |
| TspRI | CASTG | 1 cut(s) | 571 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 566 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 704 |
| XceI | RCATGY | 1 cut(s) | 576 |
| XspI | CTAG | 1 cut(s) | 912 |