FvH4_6g38100

Protodermal factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015329
Physical Location & Seq
Reverse (-)
30138855 .. 30140826
1972 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38100.t1

Sequence Viewer

Length: 891 bp
ATGGGTGCTATGATGAGGAACAAAGCGTCTTCTTCTTTGTTCATATGGGCATTGGTTGCTGGTATGCTCTCCCACAACCTGGTCATCCCTGTCATGTCCACCACCTTTGAGGACCAGAAGAACTACTACACTCCAGACCCCGGCACCGGAACTCCCCCACCTTCAGGCCACGGTGGAAGCACCACTCCCGGAGGTTCACATGGAAGTCCTCCTTCCCACCACCATACCCCATCTCATTCCAACCCTCCCTCTCATGGAAGCTACAACCCTTCACCATCACCACCTACCAACTGTGGTACACCACCATCAAGACTAACTCCAACTCCATCAAGACCGACAACTCCTTCAACCCCAACCTACGGAACTCCACCATCAACTCCAACCTACGGAACTCCACCATCAACTCCAACCTACAGAACTCCACCTTCAACCCCATTAACACCCCCTGTCATTGTTACTCCTCCAATCATCGGAACTCCACCAATCGACCCCGGGACTCCAGGTGTTCCTACACCTCCCTATCTTCCTAATCCCAACTCCCCTCCCTTCACATGCACCTACTGGAGGAACCACCCCACAGTGATCTGGGGTCTTGTGGGCTGGTGGGCAACTATGGGTCATACCTTTGGTCTAACTAGCCTTCCAGGGTTCGGATCAAGCACCATGAACTTGCAGCAAGCGCTTTCCAACACTCGTACAGATGGAGTTGGGGAACTCTACAGAGAAGGAACAGCTGCCTTGCTCAACTCAATGGTGGACAACAGGTTCCATTTCACTACCACGCAAGTCAGGGACAGCTTCGTCAGAGGACTGAGTTCCAACAAGGCAGCAAAAAACCAAGCTCGTCTCTTCAGGCTGGCTAATGAGGGCAAACTCAAGCCCAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

31.43

Weight (kDa)

9.84

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42840
fragaria_vesca FvH4_6g38100
malus_domestica MD09G1154000.v1.1 MD17G1140600.v1.1
prunus_persica Prupe.3G171000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151161
rosa_laevigata RLG00000020537
rosa_multiflora Rmu_co8431777.1_g000001 Rmu_sc0002298.1_g000018
rosa_roxburghii Rroxscaffold_2G00096690
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2AG485900 Rh2BG497800 Rh2CG471700 Rh2DG508700
rosa_wichuraiana Rw2G039790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 800
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 79
AclWI GGATC 1 cut(s) 661
AcuI CTGAAG 2 cut(s) 147, 835
AfaI GTAC 2 cut(s) 298, 697
AfeI AGCGCT 1 cut(s) 681
AgsI TTSAA 2 cut(s) 348, 429
AjnI CCWGG 3 cut(s) 78, 499, 643
AloI GAACNNNNNNTCC 2 cut(s) 749, 781
AluBI AGCT 5 cut(s) 261, 734, 798, 842, 887
AluI AGCT 5 cut(s) 261, 734, 798, 842, 887
Alw26I GTCTC 1 cut(s) 851
AlwI GGATC 1 cut(s) 661
Ama87I CYCGRG 1 cut(s) 491
Aor51HI AGCGCT 1 cut(s) 681
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 3 cut(s) 673, 734, 827
AspLEI GCGC 1 cut(s) 682
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 4 cut(s) 141, 189, 492, 493
AsuHPI GGTGA 2 cut(s) 264, 270
AvaI CYCGRG 1 cut(s) 491
AvaII GGWCC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 3 cut(s) 685, 721, 839
BccI CCATC 7 cut(s) 238, 283, 313, 334, 379, 406, 695
BciT130I CCWGG 3 cut(s) 80, 501, 645
BcnI CCSGG 4 cut(s) 141, 189, 492, 493
BcoDI GTCTC 1 cut(s) 851
BfaI CTAG 1 cut(s) 636
BfmI CTRYAG 2 cut(s) 412, 718
BfoI RGCGCY 1 cut(s) 683
BisI GCNGC 3 cut(s) 674, 735, 828
BlsI GCNGC 3 cut(s) 675, 736, 829
Bme1390I CCNGG 7 cut(s) 80, 141, 189, 492, 493, 501, 645
Bme18I GGWCC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 3 cut(s) 145, 569, 767
BmrFI CCNGG 7 cut(s) 80, 141, 189, 492, 493, 501, 645
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 3 cut(s) 117, 483, 583
BpuEI CTTGAG 1 cut(s) 860
BpuMI CCSGG 4 cut(s) 141, 189, 492, 493
BsaJI CCNNGG 5 cut(s) 139, 169, 490, 491, 644
BsaWI WCCGGW 1 cut(s) 146
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 307, 337
Bse1I ACTGG 1 cut(s) 566
BseBI CCWGG 3 cut(s) 80, 501, 645
BseDI CCNNGG 5 cut(s) 139, 169, 490, 491, 644
BseGI GGATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 803
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 3 cut(s) 685, 721, 839
BshFI GGCC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 4 cut(s) 141, 147, 189, 492
BslFI GGGAC 2 cut(s) 508, 806
BsmAI GTCTC 1 cut(s) 851
BsmBI CGTCTC 1 cut(s) 851
BsmFI GGGAC 2 cut(s) 508, 806
BsnI GGCC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 491
Bsp143I GATC 2 cut(s) 582, 653
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 804
BspLI GGNNCC 3 cut(s) 145, 569, 767
BspPI GGATC 1 cut(s) 661
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 566
BssECI CCNNGG 5 cut(s) 139, 169, 490, 491, 644
BssMI GATC 2 cut(s) 582, 653
Bst2UI CCWGG 3 cut(s) 80, 501, 645
Bst4CI ACNGT 3 cut(s) 173, 293, 580
Bst6I CTCTTC 1 cut(s) 854
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 678, 858
BstDEI CTNAG 1 cut(s) 812
BstDSI CCRYGG 1 cut(s) 169
BstENI CCTNNNNNAGG 1 cut(s) 562
BstF5I GGATG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 683
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 2 cut(s) 585, 656
BstMAI GTCTC 1 cut(s) 851
BstMBI GATC 2 cut(s) 582, 653
BstMWI GCNNNNNNNGC 2 cut(s) 56, 679
BstNI CCWGG 3 cut(s) 80, 501, 645
BstNSI RCATGY 1 cut(s) 555
BstSCI CCNGG 7 cut(s) 78, 139, 187, 490, 491, 499, 643
BstSFI CTRYAG 2 cut(s) 412, 718
BstV1I GCAGC 3 cut(s) 685, 721, 839
BstV2I GAAGAC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 2 cut(s) 678, 858
CfoI GCGC 1 cut(s) 682
Cfr13I GGNCC 1 cut(s) 112
Cfr9I CCCGGG 1 cut(s) 491
CseI GACGC 1 cut(s) 15
CsiI ACCWGGT 1 cut(s) 78
Csp6I GTAC 2 cut(s) 297, 696
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 5 cut(s) 94, 200, 254, 552, 664
CviQI GTAC 2 cut(s) 297, 696
DdeI CTNAG 1 cut(s) 812
DpnI GATC 2 cut(s) 584, 655
DpnII GATC 2 cut(s) 582, 653
DrdI GACNNNNNNGTC 1 cut(s) 800
DseDI GACNNNNNNGTC 1 cut(s) 800
Eam1104I CTCTTC 1 cut(s) 854
EarI CTCTTC 1 cut(s) 854
Eco47I GGWCC 1 cut(s) 112
Eco47III AGCGCT 1 cut(s) 681
Eco57I CTGAAG 2 cut(s) 147, 835
Eco88I CYCGRG 1 cut(s) 491
EcoNI CCTNNNNNAGG 1 cut(s) 562
EcoRII CCWGG 3 cut(s) 78, 499, 643
Esp3I CGTCTC 1 cut(s) 851
FaeI CATG 5 cut(s) 97, 203, 257, 555, 667
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FaqI GGGAC 2 cut(s) 508, 806
FatI CATG 5 cut(s) 93, 199, 253, 551, 663
FauNDI CATATG 1 cut(s) 44
Fnu4HI GCNGC 3 cut(s) 674, 735, 828
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 3 cut(s) 674, 735, 828
FspBI CTAG 1 cut(s) 636
GlaI GCGC 1 cut(s) 681
GluI GCNGC 3 cut(s) 674, 735, 828
GsuI CTGGAG 3 cut(s) 117, 483, 583
HaeII RGCGCY 1 cut(s) 683
HaeIII GGCC 1 cut(s) 168
HapII CCGG 4 cut(s) 141, 147, 189, 492
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 682
Hin1II CATG 5 cut(s) 97, 203, 257, 555, 667
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HinfI GANTC 1 cut(s) 496
HpaII CCGG 4 cut(s) 141, 147, 189, 492
HphI GGTGA 2 cut(s) 264, 270
Hpy166II GTNNAC 4 cut(s) 99, 197, 299, 757
Hpy188I TCNGA 3 cut(s) 473, 653, 806
Hpy188III TCNNGA 3 cut(s) 134, 309, 330
Hpy8I GTNNAC 4 cut(s) 99, 197, 299, 757
HpyAV CCTTC 8 cut(s) 171, 222, 279, 354, 435, 556, 650, 719
HpyCH4III ACNGT 3 cut(s) 173, 293, 580
HpyCH4V TGCA 2 cut(s) 555, 673
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 679
HpyF3I CTNAG 1 cut(s) 812
Hsp92II CATG 5 cut(s) 97, 203, 257, 555, 667
HspAI GCGC 1 cut(s) 680
Kzo9I GATC 2 cut(s) 582, 653
Lsp1109I GCAGC 3 cut(s) 685, 721, 839
MabI ACCWGGT 1 cut(s) 78
MaeI CTAG 1 cut(s) 636
MaeIII GTNAC 1 cut(s) 454
MalI GATC 2 cut(s) 584, 655
MboI GATC 2 cut(s) 582, 653
MboII GAAGA 5 cut(s) 21, 24, 130, 515, 841
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 6 cut(s) 264, 344, 404, 431, 711, 843
MseI TTAA 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 4 cut(s) 141, 147, 189, 492
MspR9I CCNGG 7 cut(s) 80, 141, 189, 492, 493, 501, 645
MvaI CCWGG 3 cut(s) 80, 501, 645
MwoI GCNNNNNNNGC 2 cut(s) 56, 679
NciI CCSGG 4 cut(s) 141, 189, 492, 493
NdeI CATATG 1 cut(s) 44
NdeII GATC 2 cut(s) 582, 653
NlaIII CATG 5 cut(s) 97, 203, 257, 555, 667
NlaIV GGNNCC 3 cut(s) 145, 569, 767
NspI RCATGY 1 cut(s) 555
PflMI CCANNNNNTGG 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 3 cut(s) 675, 736, 829
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Psp6I CCWGG 3 cut(s) 78, 499, 643
PspGI CCWGG 3 cut(s) 78, 499, 643
PspN4I GGNNCC 3 cut(s) 145, 569, 767
PspPI GGNCC 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 2 cut(s) 298, 697
RsaNI GTAC 2 cut(s) 297, 696
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 3 cut(s) 674, 735, 828
Sau3AI GATC 2 cut(s) 582, 653
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 7 cut(s) 80, 141, 189, 492, 493, 501, 645
SexAI ACCWGGT 1 cut(s) 78
SfcI CTRYAG 2 cut(s) 412, 718
SinI GGWCC 1 cut(s) 112
SmaI CCCGGG 1 cut(s) 493
SmlI CTYRAG 1 cut(s) 875
SmoI CTYRAG 1 cut(s) 875
SspMI CTAG 1 cut(s) 636
StyD4I CCNGG 7 cut(s) 78, 139, 187, 490, 491, 499, 643
TaaI ACNGT 3 cut(s) 173, 293, 580
TaqI TCGA 1 cut(s) 486
TaqII GACCGA 1 cut(s) 349
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 1 cut(s) 585
TseI GCWGC 3 cut(s) 673, 734, 827
TspDTI ATGAA 2 cut(s) 31, 680
TspGWI ACGGA 2 cut(s) 375, 402
TspMI CCCGGG 1 cut(s) 491
TspRI CASTG 1 cut(s) 585
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 112
XagI CCTNNNNNAGG 1 cut(s) 562
XceI RCATGY 1 cut(s) 555
XmaI CCCGGG 1 cut(s) 491
XspI CTAG 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.