MD17G1140600.v1.1

Protodermal factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015329
Physical Location & Seq
Forward (+)
12634506 .. 12636115
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1140600.v1.1.491

Sequence Viewer

Length: 894 bp
ATGGGGAGATTGAGAAGCAATGCTGCCTCTTTGATTCTATGGCCTTTGGTTGTTGGGTTACTTTCCCAGAACTTGGTCATCTCTGTCATGTCCTCCACTGTCCAAGACCAGAAGAACTACTACTCTCCACCAGACCCCGACTCCGGCAGCCCCCCTGGAGGTTCACACGGAACTCCTTCCAGCCCACCATCACACGGTGGCGGCTCTCAAAGCCCCCCGTCTCATGGAGGTGGTGGAAGCTACAACCCTACACCATCACCACCTTCCAACTGTGGCACCCCACCAGCACACCACAACCCAACTCCATCACATGACCCTAGCACTCCATCCACTCCATCCACTCCATCAACTCCAAGCGGTGGTGGCTACTACTACTCTCCGCCACCAACTTATGGTGGCAGCCCCCCAACCACACCAGAAATTGGTACCCCTCCCACCCCAGTCATTCTAAGCCCCCCGATCCCAGACATTGGAACCCCACCAATTGACCCAAACACCCCAATCATCCCTTCTCCTCCTTTTCTTCCTGGCCCCAACTCCCTTCCACCCTTCACATGCAACTATTGGGGGAGCCACCCCACACTAATATGGGGTCTGTTGGGCTGGTGGGGAACTTTGGGCAATTCTTTTGGCGTGTCTAGTCTTCCAGGGATCGGATCCGGCACCATGAGCCTCCCGCAGGCACTTTCCAACACCCGCACCGACGGGCTAGGAGAGCTCTACAGACAAGGAACTGCTGCCTTGTTGAATGCCATGGTGGATAACAGGTTCCACTTCACCACCAACCAAGTCAGGGACAGCTTCGTCAGTGCACTTGGATCAAACAAGGCTGCAGCAACTCAAGCCCGCGTTTTCAAGCTTGCCAACGAAGGAAAACTCAAGCCCAGAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

30.6

Weight (kDa)

7.85

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42840
fragaria_vesca FvH4_6g38100
malus_domestica MD09G1154000.v1.1 MD17G1140600.v1.1
prunus_persica Prupe.3G171000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151161
rosa_laevigata RLG00000020537
rosa_multiflora Rmu_co8431777.1_g000001 Rmu_sc0002298.1_g000018
rosa_roxburghii Rroxscaffold_2G00096690
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2AG485900 Rh2BG497800 Rh2CG471700 Rh2DG508700
rosa_wichuraiana Rw2G039790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 803
Acc65I GGTACC 1 cut(s) 425
AccB1I GGYRCC 3 cut(s) 275, 425, 662
AccB7I CCANNNNNTGG 5 cut(s) 73, 359, 392, 422, 470
AccII CGCG 1 cut(s) 849
AciI CCGC 6 cut(s) 201, 357, 380, 677, 697, 847
AclWI GGATC 5 cut(s) 454, 651, 659, 664, 826
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 1 cut(s) 427
AgsI TTSAA 2 cut(s) 748, 856
AjnI CCWGG 3 cut(s) 154, 526, 646
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
AloI GAACNNNNNNTCC 2 cut(s) 752, 784
AluBI AGCT 4 cut(s) 240, 718, 801, 859
AluI AGCT 4 cut(s) 240, 718, 801, 859
Alw21I GWGCWC 2 cut(s) 720, 814
Alw26I GTCTC 1 cut(s) 225
Alw44I GTGCAC 1 cut(s) 810
AlwI GGATC 5 cut(s) 454, 651, 659, 664, 826
AlwNI CAGNNNCTG 1 cut(s) 891
AoxI GGCC 2 cut(s) 41, 529
ApaLI GTGCAC 1 cut(s) 810
ApeKI GCWGC 6 cut(s) 23, 147, 399, 737, 830, 833
Asp700I GAANNNNTTC 1 cut(s) 175
Asp718I GGTACC 1 cut(s) 425
AspS9I GGNCC 1 cut(s) 530
AsuHPI GGTGA 2 cut(s) 249, 769
BaeGI GKGCMC 1 cut(s) 814
BamHI GGATCC 1 cut(s) 656
BanI GGYRCC 3 cut(s) 275, 425, 662
BanII GRGCYC 1 cut(s) 720
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbsI GAAGAC 1 cut(s) 635
Bbv12I GWGCWC 2 cut(s) 720, 814
BbvI GCAGC 6 cut(s) 10, 159, 411, 724, 817, 845
BccI CCATC 6 cut(s) 196, 262, 313, 334, 343, 352
BciT130I CCWGG 3 cut(s) 156, 528, 648
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 3 cut(s) 318, 639, 710
BfmI CTRYAG 2 cut(s) 721, 831
BisI GCNGC 7 cut(s) 24, 148, 202, 400, 738, 831, 834
BlsI GCNGC 7 cut(s) 25, 149, 203, 401, 739, 832, 835
Bme1390I CCNGG 3 cut(s) 156, 528, 648
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 8 cut(s) 277, 427, 475, 532, 572, 658, 664, 770
BmrFI CCNGG 3 cut(s) 156, 528, 648
BmrI ACTGGG 1 cut(s) 434
BmuI ACTGGG 1 cut(s) 434
BpiI GAAGAC 1 cut(s) 635
BpmI CTGGAG 1 cut(s) 177
BpuEI CTTGAG 2 cut(s) 825, 863
BsaJI CCNNGG 3 cut(s) 154, 647, 753
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse1I ACTGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 3 cut(s) 156, 528, 648
BseDI CCNNGG 3 cut(s) 154, 647, 753
BseGI GGATG 3 cut(s) 326, 335, 504
BseMI GCAATG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 814
BseXI GCAGC 6 cut(s) 10, 159, 411, 724, 817, 845
Bsh1236I CGCG 1 cut(s) 849
BshFI GGCC 2 cut(s) 43, 531
BshNI GGYRCC 3 cut(s) 275, 425, 662
BsiHKAI GWGCWC 2 cut(s) 720, 814
BsiSI CCGG 2 cut(s) 144, 660
BslFI GGGAC 1 cut(s) 809
BsmAI GTCTC 1 cut(s) 225
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 809
BsmI GAATGC 1 cut(s) 754
BsnI GGCC 2 cut(s) 43, 531
Bsp1286I GDGCHC 2 cut(s) 720, 814
Bsp143I GATC 4 cut(s) 459, 651, 656, 818
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 6 cut(s) 201, 357, 380, 677, 697, 847
BspANI GGCC 2 cut(s) 43, 531
BspFNI CGCG 1 cut(s) 849
BspLI GGNNCC 8 cut(s) 277, 427, 475, 532, 572, 658, 664, 770
BspMAI CTGCAG 1 cut(s) 835
BspPI GGATC 5 cut(s) 454, 651, 659, 664, 826
BspT107I GGYRCC 3 cut(s) 275, 425, 662
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 1 cut(s) 440
BssECI CCNNGG 3 cut(s) 154, 647, 753
BssMI GATC 4 cut(s) 459, 651, 656, 818
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 3 cut(s) 156, 528, 648
Bst4CI ACNGT 3 cut(s) 100, 197, 272
BstC8I GCNNGC 3 cut(s) 681, 847, 861
BstDEI CTNAG 1 cut(s) 449
BstDSI CCRYGG 1 cut(s) 753
BstENI CCTNNNNNAGG 1 cut(s) 677
BstF5I GGATG 3 cut(s) 326, 335, 504
BstFNI CGCG 1 cut(s) 849
BstKTI GATC 4 cut(s) 462, 654, 659, 821
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 4 cut(s) 459, 651, 656, 818
BstMWI GCNNNNNNNGC 5 cut(s) 210, 363, 669, 715, 842
BstNI CCWGG 3 cut(s) 156, 528, 648
BstNSI RCATGY 1 cut(s) 558
BstSCI CCNGG 3 cut(s) 154, 526, 646
BstSFI CTRYAG 2 cut(s) 721, 831
BstSLI GKGCMC 1 cut(s) 814
BstUI CGCG 1 cut(s) 849
BstV1I GCAGC 6 cut(s) 10, 159, 411, 724, 817, 845
BstV2I GAAGAC 1 cut(s) 635
BstX2I RGATCY 1 cut(s) 656
BstYI RGATCY 1 cut(s) 656
BsuRI GGCC 2 cut(s) 43, 531
BtgI CCRYGG 1 cut(s) 753
BtsCI GGATG 3 cut(s) 326, 335, 504
BtsIMutI CAGTG 2 cut(s) 96, 814
Cac8I GCNNGC 3 cut(s) 681, 847, 861
CaiI CAGNNNCTG 1 cut(s) 891
Cfr13I GGNCC 1 cut(s) 530
Csp6I GTAC 1 cut(s) 426
CviAII CATG 6 cut(s) 88, 224, 311, 555, 667, 754
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 449
DpnI GATC 4 cut(s) 461, 653, 658, 820
DpnII GATC 4 cut(s) 459, 651, 656, 818
DraIII CACNNNGTG 1 cut(s) 197
DrdI GACNNNNNNGTC 1 cut(s) 803
DseDI GACNNNNNNGTC 1 cut(s) 803
EciI GGCGGA 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 718
Eco130I CCWWGG 1 cut(s) 753
Eco24I GRGCYC 1 cut(s) 720
Eco53kI GAGCTC 1 cut(s) 718
EcoICRI GAGCTC 1 cut(s) 718
EcoNI CCTNNNNNAGG 1 cut(s) 677
EcoRII CCWGG 3 cut(s) 154, 526, 646
EcoT14I CCWWGG 1 cut(s) 753
EcoT38I GRGCYC 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 753
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 6 cut(s) 91, 227, 314, 558, 670, 757
FaiI YATR 9 cut(s) 40, 89, 225, 312, 393, 556, 589, 668, 755
FaqI GGGAC 1 cut(s) 809
FatI CATG 6 cut(s) 87, 223, 310, 554, 666, 753
FauI CCCGC 3 cut(s) 684, 704, 854
Fnu4HI GCNGC 7 cut(s) 24, 148, 202, 400, 738, 831, 834
FokI GGATG 3 cut(s) 313, 322, 491
FriOI GRGCYC 1 cut(s) 720
Fsp4HI GCNGC 7 cut(s) 24, 148, 202, 400, 738, 831, 834
FspBI CTAG 3 cut(s) 318, 639, 710
GluI GCNGC 7 cut(s) 24, 148, 202, 400, 738, 831, 834
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 2 cut(s) 43, 531
HapII CCGG 2 cut(s) 144, 660
Hin1II CATG 6 cut(s) 91, 227, 314, 558, 670, 757
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 2 cut(s) 34, 140
HpaII CCGG 2 cut(s) 144, 660
HphI GGTGA 2 cut(s) 249, 769
Hpy166II GTNNAC 2 cut(s) 164, 812
Hpy188I TCNGA 1 cut(s) 656
Hpy8I GTNNAC 2 cut(s) 164, 812
Hpy99I CGWCG 1 cut(s) 707
HpyAV CCTTC 6 cut(s) 186, 273, 519, 551, 559, 863
HpyCH4III ACNGT 3 cut(s) 100, 197, 272
HpyCH4V TGCA 3 cut(s) 558, 812, 833
HpyF10VI GCNNNNNNNGC 5 cut(s) 210, 363, 669, 715, 842
HpyF3I CTNAG 1 cut(s) 449
Hsp92II CATG 6 cut(s) 91, 227, 314, 558, 670, 757
KpnI GGTACC 1 cut(s) 429
Kzo9I GATC 4 cut(s) 459, 651, 656, 818
LmnI GCTCC 1 cut(s) 570
Lsp1109I GCAGC 6 cut(s) 10, 159, 411, 724, 817, 845
MaeI CTAG 3 cut(s) 318, 639, 710
MaeIII GTNAC 1 cut(s) 57
MalI GATC 4 cut(s) 461, 653, 658, 820
MboI GATC 4 cut(s) 459, 651, 656, 818
MboII GAAGA 3 cut(s) 124, 515, 635
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 656
MhlI GDGCHC 2 cut(s) 720, 814
MluCI AATT 3 cut(s) 420, 483, 622
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 291, 714
MnlI CCTC 7 cut(s) 37, 103, 152, 221, 441, 525, 683
MroXI GAANNNNTTC 1 cut(s) 175
MslI CAYNNNNRTG 2 cut(s) 228, 586
MspI CCGG 2 cut(s) 144, 660
MspR9I CCNGG 3 cut(s) 156, 528, 648
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 754
MvaI CCWGG 3 cut(s) 156, 528, 648
MvnI CGCG 1 cut(s) 849
MwoI GCNNNNNNNGC 5 cut(s) 210, 363, 669, 715, 842
NcoI CCATGG 1 cut(s) 753
NdeII GATC 4 cut(s) 459, 651, 656, 818
NlaIII CATG 6 cut(s) 91, 227, 314, 558, 670, 757
NlaIV GGNNCC 8 cut(s) 277, 427, 475, 532, 572, 658, 664, 770
NspI RCATGY 1 cut(s) 558
PctI GAATGC 1 cut(s) 754
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 34
PflMI CCANNNNNTGG 5 cut(s) 73, 359, 392, 422, 470
PkrI GCNGC 7 cut(s) 25, 149, 203, 401, 739, 832, 835
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 720
Psp6I CCWGG 3 cut(s) 154, 526, 646
PspGI CCWGG 3 cut(s) 154, 526, 646
PspN4I GGNNCC 8 cut(s) 277, 427, 475, 532, 572, 658, 664, 770
PspPI GGNCC 1 cut(s) 530
PstI CTGCAG 1 cut(s) 835
PstNI CAGNNNCTG 1 cut(s) 891
PsuI RGATCY 1 cut(s) 656
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 2 cut(s) 228, 586
SacI GAGCTC 1 cut(s) 720
SatI GCNGC 7 cut(s) 24, 148, 202, 400, 738, 831, 834
Sau3AI GATC 4 cut(s) 459, 651, 656, 818
Sau96I GGNCC 1 cut(s) 530
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 156, 528, 648
SduI GDGCHC 2 cut(s) 720, 814
SetI ASST 8 cut(s) 163, 232, 242, 265, 720, 770, 803, 861
SfcI CTRYAG 2 cut(s) 721, 831
SmiMI CAYNNNNRTG 2 cut(s) 228, 586
SmlI CTYRAG 2 cut(s) 840, 878
SmoI CTYRAG 2 cut(s) 840, 878
Sse9I AATT 3 cut(s) 420, 483, 622
SsiI CCGC 6 cut(s) 201, 357, 380, 677, 697, 847
SspMI CTAG 3 cut(s) 318, 639, 710
SstI GAGCTC 1 cut(s) 720
StyD4I CCNGG 3 cut(s) 154, 526, 646
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 3 cut(s) 100, 197, 272
TasI AATT 3 cut(s) 420, 483, 622
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 34
TscAI CASTG 2 cut(s) 103, 814
TseI GCWGC 6 cut(s) 23, 147, 399, 737, 830, 833
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 2 cut(s) 103, 814
Van91I CCANNNNNTGG 5 cut(s) 73, 359, 392, 422, 470
VneI GTGCAC 1 cut(s) 810
XagI CCTNNNNNAGG 1 cut(s) 677
XceI RCATGY 1 cut(s) 558
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 3 cut(s) 318, 639, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.