Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8431777.1

Orthogroup ID

OG0015329

Physical Location & Seq

Genomic Coordinates Reverse (-)

436 .. 1466

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8431777.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgctctcccacaacctggtcatccctgtcatgtccaccacccttcaggaccagaagaactactacactccggaccccggcgctggaactcccccttcaggccacggtggaagccctcccggaggttcatatacaagtcctccttcccatacaccatctcatcataaccctccctctcatggaagctacaaccctccctctcatggaagctacaatcctccatctcatggaagctacaaccctacaccatcaccaccttccaactgtggtaccccaccatcaagaccatctactccttcaaccccatcaactccaacctacggaacaccaccctcaagcggtagcccccctatcattgttactcctccaacaccagtcaccgtaagccccccaatcccattcatcggaactccaccaatcgaccccggtactccaggtgttcctacacctccctatcttcctgatcccaactcccctcccttcacatgcacctactggaggaaccaccccacagtgatatggggtcttgtgggctggtttggaactttgggccatgcttttggtctgactagccttccagggttcggatcaagcaccgtgaatttgcagcaagcactttccaacactcgcgccgatggacttggggatctctacagagaaggaactgcttccttgctcaactctatggtggacaacaggttccattttactaccaagcaagtcagggatggtttcgtcagagcactgggttcgaacaaggcagcaacaaatcaagctcgtctcttcaggctggccaacgagggaaaactcaagcccagagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

28.75

Weight (kDa)

9.33

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42840
fragaria_vesca	FvH4_6g38100
malus_domestica	MD09G1154000.v1.1 MD17G1140600.v1.1
prunus_persica	Prupe.3G171000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151161
rosa_laevigata	RLG00000020537
rosa_multiflora	Rmu_co8431777.1_g000001 Rmu_sc0002298.1_g000018
rosa_roxburghii	Rroxscaffold_2G00096690
rosa_rugosa	Rorug02G0425400
rosa_samantha	Rh2AG485900 Rh2BG497800 Rh2CG471700 Rh2DG508700
rosa_wichuraiana	Rw2G039790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	2 cut(s)	16, 227
AccII	CGCG	1 cut(s)	630
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	3 cut(s)	458, 595, 654
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	3 cut(s)	29, 81, 769
AfaI	GTAC	2 cut(s)	271, 430
AgsI	TTSAA	1 cut(s)	300
AjnI	CCWGG	3 cut(s)	15, 433, 577
AloI	GAACNNNNNNTCC	2 cut(s)	683, 715
AluBI	AGCT	5 cut(s)	186, 210, 234, 776, 821
AluI	AGCT	5 cut(s)	186, 210, 234, 776, 821
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	1 cut(s)	785
AlwI	GGATC	3 cut(s)	458, 595, 654
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	3 cut(s)	100, 550, 792
ApeKI	GCWGC	2 cut(s)	607, 761
ApoI	RAATTY	1 cut(s)	601
Asp700I	GAANNNNTTC	1 cut(s)	667
Asp718I	GGTACC	1 cut(s)	269
AspLEI	GCGC	2 cut(s)	83, 632
AspS9I	GGNCC	3 cut(s)	49, 73, 550
AsuC2I	CCSGG	3 cut(s)	78, 120, 426
AsuHPI	GGTGA	2 cut(s)	243, 370
AsuII	TTCGAA	1 cut(s)	752
AvaII	GGWCC	2 cut(s)	49, 73
BaeI	ACNNNNGTAYC	2 cut(s)	253, 286
BalI	TGGCCA	1 cut(s)	794
BanI	GGYRCC	1 cut(s)	269
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	2 cut(s)	619, 773
BccI	CCATC	8 cut(s)	163, 229, 256, 286, 295, 313, 629, 722
BcgI	CGANNNNNNTGC	2 cut(s)	732, 766
BciT130I	CCWGG	3 cut(s)	17, 435, 579
BcnI	CCSGG	3 cut(s)	78, 120, 426
BcoDI	GTCTC	1 cut(s)	785
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	1 cut(s)	652
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	2 cut(s)	608, 762
BlsI	GCNGC	2 cut(s)	609, 763
Bme1390I	CCNGG	6 cut(s)	17, 78, 120, 426, 435, 579
Bme18I	GGWCC	2 cut(s)	49, 73
BmgT120I	GGNCC	3 cut(s)	49, 73, 550
BmiI	GGNNCC	4 cut(s)	75, 271, 503, 701
BmrFI	CCNGG	6 cut(s)	17, 78, 120, 426, 435, 579
BmrI	ACTGGG	1 cut(s)	755
BmuI	ACTGGG	1 cut(s)	755
BpmI	CTGGAG	2 cut(s)	417, 517
Bpu14I	TTCGAA	1 cut(s)	752
BpuEI	CTTGAG	2 cut(s)	319, 794
BpuMI	CCSGG	3 cut(s)	78, 120, 426
BsaJI	CCNNGG	4 cut(s)	76, 103, 424, 578
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bse1I	ACTGG	3 cut(s)	374, 500, 750
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	3 cut(s)	17, 435, 579
BseDI	CCNNGG	4 cut(s)	76, 103, 424, 578
BseGI	GGATG	2 cut(s)	21, 733
BseNI	ACTGG	3 cut(s)	374, 500, 750
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	619, 773
Bsh1236I	CGCG	1 cut(s)	630
BshFI	GGCC	3 cut(s)	102, 552, 794
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	745
BsiSI	CCGG	4 cut(s)	71, 78, 120, 426
BsmAI	GTCTC	1 cut(s)	785
BsmBI	CGTCTC	1 cut(s)	785
BsnI	GGCC	3 cut(s)	102, 552, 794
Bsp119I	TTCGAA	1 cut(s)	752
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	463, 587, 646
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	3 cut(s)	102, 552, 794
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	630
BspLI	GGNNCC	4 cut(s)	75, 271, 503, 701
BspPI	GGATC	3 cut(s)	458, 595, 654
BspT104I	TTCGAA	1 cut(s)	752
BspT107I	GGYRCC	1 cut(s)	269
BsrI	ACTGG	3 cut(s)	374, 500, 750
BssECI	CCNNGG	4 cut(s)	76, 103, 424, 578
BssMI	GATC	3 cut(s)	463, 587, 646
Bst2UI	CCWGG	3 cut(s)	17, 435, 579
Bst4CI	ACNGT	5 cut(s)	107, 266, 382, 514, 598
Bst6I	CTCTTC	1 cut(s)	788
BstBI	TTCGAA	1 cut(s)	752
BstC8I	GCNNGC	2 cut(s)	612, 792
BstDSI	CCRYGG	1 cut(s)	103
BstENI	CCTNNNNNAGG	2 cut(s)	120, 496
BstF5I	GGATG	2 cut(s)	21, 733
BstFNI	CGCG	1 cut(s)	630
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 632
BstKTI	GATC	3 cut(s)	466, 590, 649
BstMAI	GTCTC	1 cut(s)	785
BstMBI	GATC	3 cut(s)	463, 587, 646
BstNI	CCWGG	3 cut(s)	17, 435, 579
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	6 cut(s)	15, 76, 118, 424, 433, 577
BstSFI	CTRYAG	1 cut(s)	652
BstUI	CGCG	1 cut(s)	630
BstV1I	GCAGC	2 cut(s)	619, 773
BstX2I	RGATCY	1 cut(s)	646
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	646
BsuRI	GGCC	3 cut(s)	102, 552, 794
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	21, 733
BtsIMutI	CAGTG	2 cut(s)	519, 743
Cac8I	GCNNGC	2 cut(s)	612, 792
CfoI	GCGC	2 cut(s)	83, 632
Cfr13I	GGNCC	3 cut(s)	49, 73, 550
CsiI	ACCWGGT	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	270, 429
CviAII	CATG	6 cut(s)	31, 179, 203, 227, 486, 554
CviQI	GTAC	2 cut(s)	270, 429
DpnI	GATC	3 cut(s)	465, 589, 648
DpnII	GATC	3 cut(s)	463, 587, 646
EaeI	YGGCCR	1 cut(s)	792
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
Eco47I	GGWCC	2 cut(s)	49, 73
Eco57I	CTGAAG	3 cut(s)	29, 81, 769
EcoNI	CCTNNNNNAGG	2 cut(s)	120, 496
EcoRII	CCWGG	3 cut(s)	15, 433, 577
Esp3I	CGTCTC	1 cut(s)	785
FaeI	CATG	6 cut(s)	34, 182, 206, 230, 489, 557
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FatI	CATG	6 cut(s)	30, 178, 202, 226, 485, 553
Fnu4HI	GCNGC	2 cut(s)	608, 762
FokI	GGATG	2 cut(s)	8, 740
Fsp4HI	GCNGC	2 cut(s)	608, 762
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	2 cut(s)	82, 631
GluI	GCNGC	2 cut(s)	608, 762
GsuI	CTGGAG	2 cut(s)	417, 517
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	3 cut(s)	102, 552, 794
HapII	CCGG	4 cut(s)	71, 78, 120, 426
HhaI	GCGC	2 cut(s)	83, 632
Hin1II	CATG	6 cut(s)	34, 182, 206, 230, 489, 557
Hin6I	GCGC	2 cut(s)	81, 630
HinP1I	GCGC	2 cut(s)	81, 630
HpaII	CCGG	4 cut(s)	71, 78, 120, 426
HphI	GGTGA	2 cut(s)	243, 370
Hpy166II	GTNNAC	2 cut(s)	36, 691
Hpy188I	TCNGA	4 cut(s)	407, 567, 587, 740
Hpy188III	TCNNGA	4 cut(s)	47, 71, 282, 461
Hpy8I	GTNNAC	2 cut(s)	36, 691
HpyAV	CCTTC	8 cut(s)	53, 105, 153, 267, 306, 490, 584, 653
HpyCH4III	ACNGT	5 cut(s)	107, 266, 382, 514, 598
HpyCH4V	TGCA	2 cut(s)	489, 607
Hsp92II	CATG	6 cut(s)	34, 182, 206, 230, 489, 557
HspAI	GCGC	2 cut(s)	81, 630
Kpn2I	TCCGGA	1 cut(s)	70
KpnI	GGTACC	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	463, 587, 646
Lsp1109I	GCAGC	2 cut(s)	619, 773
MabI	ACCWGGT	1 cut(s)	15
MaeI	CTAG	1 cut(s)	570
MaeIII	GTNAC	2 cut(s)	358, 376
MalI	GATC	3 cut(s)	465, 589, 648
MboI	GATC	3 cut(s)	463, 587, 646
MboII	GAAGA	3 cut(s)	67, 449, 775
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	1 cut(s)	745
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	1 cut(s)	601
MluNI	TGGCCA	1 cut(s)	794
MmeI	TCCRAC	4 cut(s)	285, 338, 392, 645
Mox20I	TGGCCA	1 cut(s)	794
MroI	TCCGGA	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	794
Msp20I	TGGCCA	1 cut(s)	794
MspI	CCGG	4 cut(s)	71, 78, 120, 426
MspR9I	CCNGG	6 cut(s)	17, 78, 120, 426, 435, 579
MvaI	CCWGG	3 cut(s)	17, 435, 579
MvnI	CGCG	1 cut(s)	630
NciI	CCSGG	3 cut(s)	78, 120, 426
NdeII	GATC	3 cut(s)	463, 587, 646
NlaIII	CATG	6 cut(s)	34, 182, 206, 230, 489, 557
NlaIV	GGNNCC	4 cut(s)	75, 271, 503, 701
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	489
NspV	TTCGAA	1 cut(s)	752
PdmI	GAANNNNTTC	1 cut(s)	667
PflMI	CCANNNNNTGG	2 cut(s)	16, 227
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	609, 763
Psp6I	CCWGG	3 cut(s)	15, 433, 577
PspGI	CCWGG	3 cut(s)	15, 433, 577
PspN4I	GGNNCC	4 cut(s)	75, 271, 503, 701
PspPI	GGNCC	3 cut(s)	49, 73, 550
PsuI	RGATCY	1 cut(s)	646
RsaI	GTAC	2 cut(s)	271, 430
RsaNI	GTAC	2 cut(s)	270, 429
SatI	GCNGC	2 cut(s)	608, 762
Sau3AI	GATC	3 cut(s)	463, 587, 646
Sau96I	GGNCC	3 cut(s)	49, 73, 550
ScrFI	CCNGG	6 cut(s)	17, 78, 120, 426, 435, 579
SduI	GDGCHC	1 cut(s)	745
SexAI	ACCWGGT	1 cut(s)	15
SfcI	CTRYAG	1 cut(s)	652
SfuI	TTCGAA	1 cut(s)	752
SinI	GGWCC	2 cut(s)	49, 73
SmlI	CTYRAG	2 cut(s)	334, 809
SmoI	CTYRAG	2 cut(s)	334, 809
Sse9I	AATT	1 cut(s)	601
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	6 cut(s)	15, 76, 118, 424, 433, 577
TaaI	ACNGT	5 cut(s)	107, 266, 382, 514, 598
TaqI	TCGA	2 cut(s)	420, 752
TasI	AATT	1 cut(s)	601
TscAI	CASTG	2 cut(s)	519, 750
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	607, 761
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	117, 391
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	519, 750
Van91I	CCANNNNNTGG	2 cut(s)	16, 227
VpaK11BI	GGWCC	2 cut(s)	49, 73
XagI	CCTNNNNNAGG	2 cut(s)	120, 496
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	667
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.