MD09G1154000.v1.1

Protodermal factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015329
Physical Location & Seq
Forward (+)
12219062 .. 12220472
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1154000.v1.1.491

Sequence Viewer

Length: 849 bp
ATGGGGAGAGTGAGAAGCAATGCAGCCTCTTTGTTCCTATGGACTTTGGTTGCTGGGTTGCTCTCCCAGAACTTGATCATCCCTGTCATGTCCTCCGCTGTTCAAGACCAGAAGACCTACTACTCTCCACCAGACCCCCACTCCGGCAGCACCCCTGGAGGTTCACACGGAACTCCTTCCCGCCCACCATCACACGGTGGCGGCTCTCACAGGTCTCATGGAGGTGGCGGAAGCCACAACCCTACACCATCACCACCTTCCAACTGTGGCACCCCACCAGCACACCACAACCCTACTCCATCCACTCCAAGCGGTGGTGGTTACTACCACTCTCCGCCACCAACTTATGGCGGCAGCCCCCCAACCACACCAATAATCGGTACCCCTCCCACCCCAGTCATTGTGAGCCCCCCAATCCCAGTCATTGGAACCCCACCAACCGACCCGAACACCCCAACTATTCCCACTCCACCTTTTCTTCCTGACCCCAACTCCCTTCCACCCTTCACATGCAACTACTGGAGGAGCCACCCAACACTGATATGGGGTCTGTTGGGCTGGTGGGGAAACTTGGGCCACTCTTTTGGTGTGTCTAGTCTTCCAGGGATCGGATCCGGCACCATGAGCCTCCCACAGGCCCTTTCAAACACCCGCACCGACGGGCTAGGAGAGCTCTACAGACAAGGAACTGCTGCCTTGCTGAATGCCATGGTGGATAACAGGTTCCACTTCACCACCAACCAAGTCAGGGACAGCTTCGTCAGAGCACTGGGATCGAACAAGGCTGCAGCGACTCAAGCCCGCGTTTTCAAGCTTGCCAACGAAGGAAAACTCAAGCCAAGAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

29.42

Weight (kDa)

9.88

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42840
fragaria_vesca FvH4_6g38100
malus_domestica MD09G1154000.v1.1 MD17G1140600.v1.1
prunus_persica Prupe.3G171000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151161
rosa_laevigata RLG00000020537
rosa_multiflora Rmu_co8431777.1_g000001 Rmu_sc0002298.1_g000018
rosa_roxburghii Rroxscaffold_2G00096690
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2AG485900 Rh2BG497800 Rh2CG471700 Rh2DG508700
rosa_wichuraiana Rw2G039790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 758
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 3 cut(s) 269, 380, 617
AccB7I CCANNNNNTGG 3 cut(s) 314, 347, 425
AccII CGCG 1 cut(s) 804
AciI CCGC 9 cut(s) 96, 181, 201, 228, 312, 335, 351, 652, 802
AclWI GGATC 4 cut(s) 606, 614, 619, 781
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 9 cut(s) 143, 194, 314, 347, 377, 425, 608, 634, 748
AgsI TTSAA 3 cut(s) 104, 645, 811
AjnI CCWGG 2 cut(s) 154, 601
AloI GAACNNNNNNTCC 2 cut(s) 707, 739
AluBI AGCT 3 cut(s) 673, 756, 814
AluI AGCT 3 cut(s) 673, 756, 814
Alw21I GWGCWC 2 cut(s) 675, 769
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 4 cut(s) 606, 614, 619, 781
AoxI GGCC 2 cut(s) 574, 636
ApeKI GCWGC 6 cut(s) 23, 147, 354, 692, 785, 788
Asp700I GAANNNNTTC 1 cut(s) 175
Asp718I GGTACC 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 574, 637
AsuHPI GGTGA 2 cut(s) 243, 724
BamHI GGATCC 1 cut(s) 611
BanI GGYRCC 3 cut(s) 269, 380, 617
BanII GRGCYC 2 cut(s) 410, 675
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbsI GAAGAC 2 cut(s) 119, 590
Bbv12I GWGCWC 2 cut(s) 675, 769
BbvI GCAGC 6 cut(s) 35, 159, 366, 679, 772, 800
BccI CCATC 3 cut(s) 196, 256, 307
BcgI CGANNNNNNTGC 2 cut(s) 756, 790
BciT130I CCWGG 2 cut(s) 156, 603
BclI TGATCA 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 2 cut(s) 594, 665
BfmI CTRYAG 2 cut(s) 676, 786
BisI GCNGC 8 cut(s) 24, 148, 202, 352, 355, 693, 786, 789
BlsI GCNGC 8 cut(s) 25, 149, 203, 353, 356, 694, 787, 790
Bme1390I CCNGG 2 cut(s) 156, 603
BmgT120I GGNCC 2 cut(s) 574, 637
BmiI GGNNCC 7 cut(s) 271, 382, 430, 527, 613, 619, 725
BmrFI CCNGG 2 cut(s) 156, 603
BmrI ACTGGG 3 cut(s) 389, 413, 779
BmuI ACTGGG 3 cut(s) 389, 413, 779
BpiI GAAGAC 2 cut(s) 119, 590
BpmI CTGGAG 2 cut(s) 177, 541
BpuEI CTTGAG 2 cut(s) 780, 818
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 154, 602, 708
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 476, 506
Bsc4I CCNNNNNNNGG 9 cut(s) 143, 194, 314, 347, 377, 425, 608, 634, 748
Bse1I ACTGG 4 cut(s) 395, 419, 524, 774
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 2 cut(s) 156, 603
BseDI CCNNGG 3 cut(s) 154, 602, 708
BseGI GGATG 2 cut(s) 78, 299
BseLI CCNNNNNNNGG 9 cut(s) 143, 194, 314, 347, 377, 425, 608, 634, 748
BseMI GCAATG 1 cut(s) 25
BseNI ACTGG 4 cut(s) 395, 419, 524, 774
BseRI GAGGAG 1 cut(s) 538
BseXI GCAGC 6 cut(s) 35, 159, 366, 679, 772, 800
BseYI CCCAGC 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 804
BshFI GGCC 2 cut(s) 576, 638
BshNI GGYRCC 3 cut(s) 269, 380, 617
BsiHKAI GWGCWC 2 cut(s) 675, 769
BsiSI CCGG 2 cut(s) 144, 615
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 9 cut(s) 143, 194, 314, 347, 377, 425, 608, 634, 748
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 764
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 2 cut(s) 576, 638
Bso31I GGTCTC 1 cut(s) 219
Bsp1286I GDGCHC 3 cut(s) 410, 675, 769
Bsp143I GATC 4 cut(s) 75, 606, 611, 773
Bsp19I CCATGG 1 cut(s) 708
BspACI CCGC 9 cut(s) 96, 181, 201, 228, 312, 335, 351, 652, 802
BspANI GGCC 2 cut(s) 576, 638
BspFNI CGCG 1 cut(s) 804
BspLI GGNNCC 7 cut(s) 271, 382, 430, 527, 613, 619, 725
BspMAI CTGCAG 1 cut(s) 790
BspPI GGATC 4 cut(s) 606, 614, 619, 781
BspT107I GGYRCC 3 cut(s) 269, 380, 617
BspTNI GGTCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 4 cut(s) 395, 419, 524, 774
BssECI CCNNGG 3 cut(s) 154, 602, 708
BssMI GATC 4 cut(s) 75, 606, 611, 773
BssT1I CCWWGG 1 cut(s) 708
Bst2UI CCWGG 2 cut(s) 156, 603
Bst4CI ACNGT 2 cut(s) 197, 266
BstC8I GCNNGC 2 cut(s) 802, 816
BstDSI CCRYGG 1 cut(s) 708
BstENI CCTNNNNNAGG 1 cut(s) 632
BstF5I GGATG 2 cut(s) 78, 299
BstFNI CGCG 1 cut(s) 804
BstKTI GATC 4 cut(s) 78, 609, 614, 776
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 4 cut(s) 75, 606, 611, 773
BstMWI GCNNNNNNNGC 3 cut(s) 624, 670, 797
BstNI CCWGG 2 cut(s) 156, 603
BstNSI RCATGY 1 cut(s) 513
BstSCI CCNGG 2 cut(s) 154, 601
BstSFI CTRYAG 2 cut(s) 676, 786
BstUI CGCG 1 cut(s) 804
BstV1I GCAGC 6 cut(s) 35, 159, 366, 679, 772, 800
BstV2I GAAGAC 2 cut(s) 119, 590
BstX2I RGATCY 1 cut(s) 611
BstXI CCANNNNNNTGG 1 cut(s) 584
BstYI RGATCY 1 cut(s) 611
BsuRI GGCC 2 cut(s) 576, 638
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 2 cut(s) 78, 299
BtsIMutI CAGTG 2 cut(s) 536, 767
Cac8I GCNNGC 2 cut(s) 802, 816
Cfr13I GGNCC 2 cut(s) 574, 637
Csp6I GTAC 1 cut(s) 381
CviAII CATG 5 cut(s) 88, 218, 510, 622, 709
CviQI GTAC 1 cut(s) 381
DpnI GATC 4 cut(s) 77, 608, 613, 775
DpnII GATC 4 cut(s) 75, 606, 611, 773
DraIII CACNNNGTG 1 cut(s) 197
DrdI GACNNNNNNGTC 1 cut(s) 758
DseDI GACNNNNNNGTC 1 cut(s) 758
EciI GGCGGA 2 cut(s) 243, 324
Ecl136II GAGCTC 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 708
Eco24I GRGCYC 2 cut(s) 410, 675
Eco31I GGTCTC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 673
EcoICRI GAGCTC 1 cut(s) 673
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 637
EcoRII CCWGG 2 cut(s) 154, 601
EcoT14I CCWWGG 1 cut(s) 708
EcoT38I GRGCYC 2 cut(s) 410, 675
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 5 cut(s) 91, 221, 513, 625, 712
FaiI YATR 8 cut(s) 40, 89, 219, 348, 511, 544, 623, 710
FaqI GGGAC 1 cut(s) 764
FatI CATG 5 cut(s) 87, 217, 509, 621, 708
FauI CCCGC 3 cut(s) 188, 659, 809
FbaI TGATCA 1 cut(s) 75
Fnu4HI GCNGC 8 cut(s) 24, 148, 202, 352, 355, 693, 786, 789
FokI GGATG 2 cut(s) 65, 286
FriOI GRGCYC 2 cut(s) 410, 675
Fsp4HI GCNGC 8 cut(s) 24, 148, 202, 352, 355, 693, 786, 789
FspBI CTAG 2 cut(s) 594, 665
GluI GCNGC 8 cut(s) 24, 148, 202, 352, 355, 693, 786, 789
GsaI CCCAGC 1 cut(s) 57
GsuI CTGGAG 2 cut(s) 177, 541
HaeIII GGCC 2 cut(s) 576, 638
HapII CCGG 2 cut(s) 144, 615
Hin1II CATG 5 cut(s) 91, 221, 513, 625, 712
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 1 cut(s) 793
HpaII CCGG 2 cut(s) 144, 615
HphI GGTGA 2 cut(s) 243, 724
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 611, 764
Hpy188III TCNNGA 2 cut(s) 104, 482
Hpy8I GTNNAC 1 cut(s) 164
Hpy99I CGWCG 1 cut(s) 662
HpyAV CCTTC 5 cut(s) 186, 267, 506, 514, 818
HpyCH4III ACNGT 2 cut(s) 197, 266
HpyCH4V TGCA 3 cut(s) 23, 513, 788
HpyF10VI GCNNNNNNNGC 3 cut(s) 624, 670, 797
Hsp92II CATG 5 cut(s) 91, 221, 513, 625, 712
KpnI GGTACC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 4 cut(s) 75, 606, 611, 773
LmnI GCTCC 1 cut(s) 525
Lsp1109I GCAGC 6 cut(s) 35, 159, 366, 679, 772, 800
MaeI CTAG 2 cut(s) 594, 665
MaeIII GTNAC 1 cut(s) 320
MalI GATC 4 cut(s) 77, 608, 613, 775
MboI GATC 4 cut(s) 75, 606, 611, 773
MboII GAAGA 3 cut(s) 124, 470, 590
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 3 cut(s) 410, 675, 769
MlyI GAGTC 1 cut(s) 787
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 7 cut(s) 37, 103, 152, 215, 396, 516, 638
MroXI GAANNNNTTC 1 cut(s) 175
MslI CAYNNNNRTG 2 cut(s) 222, 541
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 2 cut(s) 144, 615
MspR9I CCNGG 2 cut(s) 156, 603
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 2 cut(s) 156, 603
MvnI CGCG 1 cut(s) 804
MwoI GCNNNNNNNGC 3 cut(s) 624, 670, 797
NcoI CCATGG 1 cut(s) 708
NdeII GATC 4 cut(s) 75, 606, 611, 773
NlaIII CATG 5 cut(s) 91, 221, 513, 625, 712
NlaIV GGNNCC 7 cut(s) 271, 382, 430, 527, 613, 619, 725
NspI RCATGY 1 cut(s) 513
PctI GAATGC 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 175
PflMI CCANNNNNTGG 3 cut(s) 314, 347, 425
PkrI GCNGC 8 cut(s) 25, 149, 203, 353, 356, 694, 787, 790
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
Psp124BI GAGCTC 1 cut(s) 675
Psp6I CCWGG 2 cut(s) 154, 601
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 2 cut(s) 154, 601
PspN4I GGNNCC 7 cut(s) 271, 382, 430, 527, 613, 619, 725
PspPI GGNCC 2 cut(s) 574, 637
PstI CTGCAG 1 cut(s) 790
PsuI RGATCY 1 cut(s) 611
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
RseI CAYNNNNRTG 2 cut(s) 222, 541
SacI GAGCTC 1 cut(s) 675
SatI GCNGC 8 cut(s) 24, 148, 202, 352, 355, 693, 786, 789
Sau3AI GATC 4 cut(s) 75, 606, 611, 773
Sau96I GGNCC 2 cut(s) 574, 637
SchI GAGTC 1 cut(s) 787
ScrFI CCNGG 2 cut(s) 156, 603
SduI GDGCHC 3 cut(s) 410, 675, 769
SfcI CTRYAG 2 cut(s) 676, 786
SmiMI CAYNNNNRTG 2 cut(s) 222, 541
SmlI CTYRAG 2 cut(s) 795, 833
SmoI CTYRAG 2 cut(s) 795, 833
SsiI CCGC 9 cut(s) 96, 181, 201, 228, 312, 335, 351, 652, 802
SspMI CTAG 2 cut(s) 594, 665
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 2 cut(s) 154, 601
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 2 cut(s) 197, 266
TaqI TCGA 1 cut(s) 776
TauI GCSGC 2 cut(s) 204, 354
TscAI CASTG 2 cut(s) 543, 774
TseI GCWGC 6 cut(s) 23, 147, 354, 692, 785, 788
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 2 cut(s) 543, 774
Van91I CCANNNNNTGG 3 cut(s) 314, 347, 425
XagI CCTNNNNNAGG 1 cut(s) 632
XceI RCATGY 1 cut(s) 513
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 2 cut(s) 594, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.