Prupe.3G171000_v2.0.a1

Protodermal factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015329
Physical Location & Seq
Reverse (-)
18988290 .. 18990685
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G171000.1

Sequence Viewer

Length: 927 bp
ATGGGCAGAGTGAGAAGCAGAGTTGCCTCTTTGTTCATATGGACTTTGGTTGCTGGGATGATATCCCAAAACTTGGTCATCCCTGTTATGTCCTCCACTGTTGAAGGCCAGAAGACCTACTACTCTCCAGACCCACATGCAGGAAGCCCCCCTGGAGGTCCACACAGTACTCCTTCCAATCCACCATCACATGGTGACTCTCACAGACCCCCCTCTCATAGAAGCCACCACCCAACACCATCATCACCACCTTCCAACTGTGGCACCCCACCATATCACAACCCAACTCCATCACATGACCCTGGAACTCCATCCCGGCCATCAACACCCTCAACTCCTCCAAGTGGCGGTGGCTACTACAACTCTCCACCAACTTCAGGAGGCTATAGCCCCCCACAAACACCAGACATTTTAACCCCTCCCACACCAGACATTTTAACCCCTCCCACACCAGACGTTTTAACCCCTCCCACACCAGACATTGTTAGCCCCCCAATGCCATACATTGGAACCCCACCAACTGACCCAAACACTCCTAGTATTCCTACACCCCCTTTTCTTCCTGATCCCAACTCTCCACCGTTTACATGCATCTACTGGAGGAACCATCCCACAGTGATATGGGGTCTGTTAGGCTGGTGGGGAACTTTGGGCCATGCATTTGGAGTGACTAGCCTTCCAGGGTTTGGCTCAAGCACCATGAGCTTGCAGCAAGCGCTTTCCAATACACATACTGATGGGCTTGGTGAACTATACAGACAAGGAACTGCTGCCTTGCTGAATTCCATGGTTGATAACAGGTTCCATTTCACAACCAAGCAAGTCAGGGACAGCTTTGTGGGAGCTCTGGGATCAAACAAAGCTGCAGCATCTCAAGCCCGTGTGTTCAAGCTGGCCAATGAAGGAAAACTCAAGTCTAGAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

32.61

Weight (kDa)

8.91

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42840
fragaria_vesca FvH4_6g38100
malus_domestica MD09G1154000.v1.1 MD17G1140600.v1.1
prunus_persica Prupe.3G171000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151161
rosa_laevigata RLG00000020537
rosa_multiflora Rmu_co8431777.1_g000001 Rmu_sc0002298.1_g000018
rosa_roxburghii Rroxscaffold_2G00096690
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2AG485900 Rh2BG497800 Rh2CG471700 Rh2DG508700
rosa_wichuraiana Rw2G039790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AccB7I CCANNNNNTGG 4 cut(s) 73, 191, 506, 686
AciI CCGC 1 cut(s) 348
AclWI GGATC 2 cut(s) 560, 859
AcoI YGGCCR 2 cut(s) 317, 894
AcsI RAATTY 1 cut(s) 781
AcuI CTGAAG 1 cut(s) 360
AdeI CACNNNGTG 1 cut(s) 194
AfaI GTAC 1 cut(s) 169
AfeI AGCGCT 1 cut(s) 717
AfiI CCNNNNNNNGG 9 cut(s) 73, 140, 155, 191, 344, 347, 377, 506, 686
AgsI TTSAA 2 cut(s) 104, 889
AjnI CCWGG 3 cut(s) 151, 301, 679
AluBI AGCT 5 cut(s) 705, 834, 845, 863, 892
AluI AGCT 5 cut(s) 705, 834, 845, 863, 892
Alw21I GWGCWC 1 cut(s) 847
AlwI GGATC 2 cut(s) 560, 859
Aor51HI AGCGCT 1 cut(s) 717
AoxI GGCC 4 cut(s) 106, 317, 652, 894
ApeKI GCWGC 4 cut(s) 709, 770, 863, 866
ApoI RAATTY 1 cut(s) 781
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 2 cut(s) 158, 652
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 3 cut(s) 206, 237, 758
AvaII GGWCC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 896
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 847
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 847
BbvI GCAGC 4 cut(s) 721, 757, 850, 878
BccI CCATC 7 cut(s) 193, 247, 298, 319, 328, 615, 731
BciT130I CCWGG 3 cut(s) 153, 303, 681
BcnI CCSGG 1 cut(s) 316
BfaI CTAG 3 cut(s) 537, 672, 918
BfmI CTRYAG 2 cut(s) 385, 864
BfoI RGCGCY 1 cut(s) 719
BisI GCNGC 4 cut(s) 710, 771, 864, 867
BlsI GCNGC 4 cut(s) 711, 772, 865, 868
BmcAI AGTACT 1 cut(s) 169
Bme1390I CCNGG 4 cut(s) 153, 303, 316, 681
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 2 cut(s) 158, 652
BmiI GGNNCC 4 cut(s) 265, 511, 605, 803
BmrFI CCNGG 4 cut(s) 153, 303, 316, 681
BmsI GCATC 2 cut(s) 600, 878
BpiI GAAGAC 1 cut(s) 119
BpmI CTGGAG 3 cut(s) 111, 174, 619
BpuEI CTTGAG 3 cut(s) 676, 858, 896
BpuMI CCSGG 1 cut(s) 316
BsaJI CCNNGG 4 cut(s) 151, 301, 680, 786
Bsc4I CCNNNNNNNGG 9 cut(s) 73, 140, 155, 191, 344, 347, 377, 506, 686
Bse1I ACTGG 1 cut(s) 602
BseBI CCWGG 3 cut(s) 153, 303, 681
BseDI CCNNGG 4 cut(s) 151, 301, 680, 786
BseGI GGATG 4 cut(s) 63, 78, 311, 607
BseLI CCNNNNNNNGG 9 cut(s) 73, 140, 155, 191, 344, 347, 377, 506, 686
BseNI ACTGG 1 cut(s) 602
BseRI GAGGAG 1 cut(s) 327
BseXI GCAGC 4 cut(s) 721, 757, 850, 878
BseYI CCCAGC 1 cut(s) 53
BshFI GGCC 4 cut(s) 108, 319, 654, 896
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 847
BsiSI CCGG 1 cut(s) 316
BslFI GGGAC 1 cut(s) 842
BslI CCNNNNNNNGG 9 cut(s) 73, 140, 155, 191, 344, 347, 377, 506, 686
BsmFI GGGAC 1 cut(s) 842
BsnI GGCC 4 cut(s) 108, 319, 654, 896
Bsp1286I GDGCHC 1 cut(s) 847
Bsp143I GATC 2 cut(s) 565, 851
Bsp19I CCATGG 1 cut(s) 786
BspACI CCGC 1 cut(s) 348
BspANI GGCC 4 cut(s) 108, 319, 654, 896
BspLI GGNNCC 4 cut(s) 265, 511, 605, 803
BspMAI CTGCAG 1 cut(s) 868
BspPI GGATC 2 cut(s) 560, 859
BspT107I GGYRCC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 602
BssECI CCNNGG 4 cut(s) 151, 301, 680, 786
BssMI GATC 2 cut(s) 565, 851
BssT1I CCWWGG 1 cut(s) 786
Bst2UI CCWGG 3 cut(s) 153, 303, 681
Bst4CI ACNGT 5 cut(s) 100, 167, 260, 582, 616
BstC8I GCNNGC 3 cut(s) 707, 714, 894
BstDSI CCRYGG 1 cut(s) 786
BstF5I GGATG 4 cut(s) 63, 78, 311, 607
BstH2I RGCGCY 1 cut(s) 719
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 2 cut(s) 568, 854
BstMBI GATC 2 cut(s) 565, 851
BstMWI GCNNNNNNNGC 3 cut(s) 702, 715, 875
BstNI CCWGG 3 cut(s) 153, 303, 681
BstNSI RCATGY 2 cut(s) 140, 591
BstSCI CCNGG 4 cut(s) 151, 301, 314, 679
BstSFI CTRYAG 2 cut(s) 385, 864
BstV1I GCAGC 4 cut(s) 721, 757, 850, 878
BstV2I GAAGAC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 662
BsuRI GGCC 4 cut(s) 108, 319, 654, 896
BtgI CCRYGG 1 cut(s) 786
BtsCI GGATG 4 cut(s) 63, 78, 311, 607
BtsIMutI CAGTG 2 cut(s) 96, 621
Cac8I GCNNGC 3 cut(s) 707, 714, 894
CfoI GCGC 1 cut(s) 718
Cfr13I GGNCC 2 cut(s) 158, 652
Csp6I GTAC 1 cut(s) 168
CviAII CATG 7 cut(s) 137, 191, 296, 588, 656, 700, 787
CviQI GTAC 1 cut(s) 168
DpnI GATC 2 cut(s) 567, 853
DpnII GATC 2 cut(s) 565, 851
DraIII CACNNNGTG 1 cut(s) 194
EaeI YGGCCR 2 cut(s) 317, 894
Ecl136II GAGCTC 1 cut(s) 845
Eco130I CCWWGG 1 cut(s) 786
Eco24I GRGCYC 1 cut(s) 847
Eco32I GATATC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 158
Eco47III AGCGCT 1 cut(s) 717
Eco53kI GAGCTC 1 cut(s) 845
Eco57I CTGAAG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 845
EcoRI GAATTC 1 cut(s) 781
EcoRII CCWGG 3 cut(s) 151, 301, 679
EcoRV GATATC 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 786
EcoT22I ATGCAT 2 cut(s) 593, 661
EcoT38I GRGCYC 1 cut(s) 847
ErhI CCWWGG 1 cut(s) 786
FaeI CATG 7 cut(s) 140, 194, 299, 591, 659, 703, 790
FaqI GGGAC 1 cut(s) 842
FatI CATG 7 cut(s) 136, 190, 295, 587, 655, 699, 786
FauNDI CATATG 1 cut(s) 38
Fnu4HI GCNGC 4 cut(s) 710, 771, 864, 867
FokI GGATG 4 cut(s) 65, 70, 298, 594
FriOI GRGCYC 1 cut(s) 847
Fsp4HI GCNGC 4 cut(s) 710, 771, 864, 867
FspBI CTAG 3 cut(s) 537, 672, 918
GlaI GCGC 1 cut(s) 717
GluI GCNGC 4 cut(s) 710, 771, 864, 867
GsaI CCCAGC 1 cut(s) 57
GsuI CTGGAG 3 cut(s) 111, 174, 619
HaeII RGCGCY 1 cut(s) 719
HaeIII GGCC 4 cut(s) 108, 319, 654, 896
HapII CCGG 1 cut(s) 316
HhaI GCGC 1 cut(s) 718
Hin1II CATG 7 cut(s) 140, 194, 299, 591, 659, 703, 790
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 316
HphI GGTGA 3 cut(s) 206, 237, 758
Hpy166II GTNNAC 3 cut(s) 161, 585, 749
Hpy188III TCNNGA 4 cut(s) 128, 378, 563, 918
Hpy8I GTNNAC 3 cut(s) 161, 585, 749
HpyAV CCTTC 5 cut(s) 98, 183, 261, 686, 896
HpyCH4III ACNGT 5 cut(s) 100, 167, 260, 582, 616
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 5 cut(s) 140, 591, 659, 709, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 702, 715, 875
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 7 cut(s) 140, 194, 299, 591, 659, 703, 790
HspAI GCGC 1 cut(s) 716
Kzo9I GATC 2 cut(s) 565, 851
LmnI GCTCC 1 cut(s) 842
Lsp1109I GCAGC 4 cut(s) 721, 757, 850, 878
LweI GCATC 2 cut(s) 600, 878
MaeI CTAG 3 cut(s) 537, 672, 918
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 2 cut(s) 194, 667
MalI GATC 2 cut(s) 567, 853
MboI GATC 2 cut(s) 565, 851
MboII GAAGA 2 cut(s) 124, 551
MhlI GDGCHC 1 cut(s) 847
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 1 cut(s) 781
MluNI TGGCCA 1 cut(s) 896
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 279
Mox20I TGGCCA 1 cut(s) 896
Mph1103I ATGCAT 2 cut(s) 593, 661
MscI TGGCCA 1 cut(s) 896
MseI TTAA 3 cut(s) 413, 437, 461
MslI CAYNNNNRTG 1 cut(s) 735
Msp20I TGGCCA 1 cut(s) 896
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 4 cut(s) 153, 303, 316, 681
MvaI CCWGG 3 cut(s) 153, 303, 681
MwoI GCNNNNNNNGC 3 cut(s) 702, 715, 875
NciI CCSGG 1 cut(s) 316
NcoI CCATGG 1 cut(s) 786
NdeI CATATG 1 cut(s) 38
NdeII GATC 2 cut(s) 565, 851
NlaIII CATG 7 cut(s) 140, 194, 299, 591, 659, 703, 790
NlaIV GGNNCC 4 cut(s) 265, 511, 605, 803
NmuCI GTSAC 2 cut(s) 194, 667
NsiI ATGCAT 2 cut(s) 593, 661
NspI RCATGY 2 cut(s) 140, 591
PflMI CCANNNNNTGG 4 cut(s) 73, 191, 506, 686
PkrI GCNGC 4 cut(s) 711, 772, 865, 868
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 847
Psp6I CCWGG 3 cut(s) 151, 301, 679
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 3 cut(s) 151, 301, 679
PspN4I GGNNCC 4 cut(s) 265, 511, 605, 803
PspPI GGNCC 2 cut(s) 158, 652
PstI CTGCAG 1 cut(s) 868
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 735
SacI GAGCTC 1 cut(s) 847
SaqAI TTAA 3 cut(s) 413, 437, 461
SatI GCNGC 4 cut(s) 710, 771, 864, 867
Sau3AI GATC 2 cut(s) 565, 851
Sau96I GGNCC 2 cut(s) 158, 652
ScaI AGTACT 1 cut(s) 169
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 153, 303, 316, 681
SduI GDGCHC 1 cut(s) 847
SfaNI GCATC 2 cut(s) 600, 878
SfcI CTRYAG 2 cut(s) 385, 864
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 735
SmlI CTYRAG 3 cut(s) 691, 873, 911
SmoI CTYRAG 3 cut(s) 691, 873, 911
Sse9I AATT 1 cut(s) 781
SsiI CCGC 1 cut(s) 348
SspMI CTAG 3 cut(s) 537, 672, 918
SstI GAGCTC 1 cut(s) 847
StyD4I CCNGG 4 cut(s) 151, 301, 314, 679
StyI CCWWGG 1 cut(s) 786
TaaI ACNGT 5 cut(s) 100, 167, 260, 582, 616
TaiI ACGT 1 cut(s) 459
TasI AATT 1 cut(s) 781
TatI WGTACW 1 cut(s) 167
Tru1I TTAA 3 cut(s) 413, 437, 461
Tru9I TTAA 3 cut(s) 413, 437, 461
TscAI CASTG 2 cut(s) 103, 621
TseFI GTSAC 2 cut(s) 194, 667
TseI GCWGC 4 cut(s) 709, 770, 863, 866
Tsp45I GTSAC 2 cut(s) 194, 667
TspDTI ATGAA 2 cut(s) 25, 915
TspRI CASTG 2 cut(s) 103, 621
Van91I CCANNNNNTGG 4 cut(s) 73, 191, 506, 686
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 1 cut(s) 781
XbaI TCTAGA 1 cut(s) 917
XceI RCATGY 2 cut(s) 140, 591
XspI CTAG 3 cut(s) 537, 672, 918
ZrmI AGTACT 1 cut(s) 169
Zsp2I ATGCAT 2 cut(s) 593, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.