Rroxscaffold_2G00096690

Protodermal factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015329
Physical Location & Seq
Forward (+)
18025275 .. 18027355
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096690.1

Sequence Viewer

Length: 984 bp
ATGGGAACGATCGGCCGTGCATCGCCGGAAAACTCGTTTTCCGCCGGTCCGATCGGACGGAATCGGAGCGCCTTCGATCCGGCTTTTGGGGCCGCGGCGGTGCAAGGTGCCACCAGAGGGAGCTTGGGCGGGGCACTGCGAAACCAAGGAGGGCGGGTCGTGGCGGAGGTCGCCGAATGGAGAGAAAAACCGGGTCGCGTCGACGAAAACCCGCGGGTTCTAAGAACAAAAATGGGTGCTGTGATGATGAACAAAGCATCTTCTTCTTTGTTCATATGGGCTTTGGTTGCTGGTATGCTCTCCCACAACCTGGTCATCCCAGTCATGTCCACCACCCTTGAGGACCAGAAGAACTACTACACTCCGGACCCCGGCGCTGGAACTCCCCCTTCAGGCCACGGTGGAAGCCCTCCCGGAGGTTCACATACAAGTCCTCCTTCCCACACACCATCTCATCATAACCCTCCCTCTCATGGAAGCTACAACCCTCCCTCTCATGGAAGCTACAACCCTACACCATCACCACCTTCCAACTGTGGTACCCCACCATCAAGACCATCTACTCCTTCAACCCCATCAACTCCAACCTACGGAACTCCACCCTCAGGCGGTAGCCCCCTATCATTGTTACTCCTCCAACACCAGTCACCCTACTGGAGGAATCACCCCACAGTGATATGGGGTCTTGTGGGCTGGTTTGGAACTTTGGGCCATGCTTTTGGTCTGACTAGCCTTCCAGGGTTCGGATCAAGCACCATGAATTTGCAGCAAGCACTTTCCAACACTCGCGCCGATGGGCTTGGGGAACTCTACAGAGAAGGAACTGCTTCCTTGCTCAACTCTATGGTGGACAACAGGTTCCATTTTACTACCAAGCAAGTCAGGGATGGTTTCGTCAGAGCACTGGGTTCGAACAAGGCAGCAACAAATCAAGCTCGTCTCTTCAGGCTGGCCAACGAGGGAAAACTCAAGCCCAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

34.43

Weight (kDa)

10.26

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42840
fragaria_vesca FvH4_6g38100
malus_domestica MD09G1154000.v1.1 MD17G1140600.v1.1
prunus_persica Prupe.3G171000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151161
rosa_laevigata RLG00000020537
rosa_multiflora Rmu_co8431777.1_g000001 Rmu_sc0002298.1_g000018
rosa_roxburghii Rroxscaffold_2G00096690
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2AG485900 Rh2BG497800 Rh2CG471700 Rh2DG508700
rosa_wichuraiana Rw2G039790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 539
AccB1I GGYRCC 2 cut(s) 107, 539
AccB7I CCANNNNNTGG 1 cut(s) 310
AccI GTMKAC 1 cut(s) 201
AccII CGCG 4 cut(s) 95, 198, 214, 789
AccIII TCCGGA 1 cut(s) 364
AclWI GGATC 2 cut(s) 71, 754
AcoI YGGCCR 2 cut(s) 13, 951
AcsI RAATTY 1 cut(s) 760
AcuI CTGAAG 2 cut(s) 375, 928
AfaI GTAC 1 cut(s) 541
AgsI TTSAA 1 cut(s) 570
AjnI CCWGG 2 cut(s) 309, 736
AloI GAACNNNNNNTCC 2 cut(s) 842, 874
AluBI AGCT 5 cut(s) 123, 480, 504, 935, 980
AluI AGCT 5 cut(s) 123, 480, 504, 935, 980
Alw21I GWGCWC 1 cut(s) 904
Alw26I GTCTC 1 cut(s) 944
AlwI GGATC 2 cut(s) 71, 754
Aor13HI TCCGGA 1 cut(s) 364
AoxI GGCC 5 cut(s) 13, 90, 394, 709, 951
ApeKI GCWGC 2 cut(s) 766, 920
ApoI RAATTY 1 cut(s) 760
Asp700I GAANNNNTTC 1 cut(s) 826
Asp718I GGTACC 1 cut(s) 539
AspLEI GCGC 3 cut(s) 71, 377, 791
AspS9I GGNCC 5 cut(s) 47, 90, 343, 367, 709
AsuC2I CCSGG 3 cut(s) 192, 372, 414
AsuHPI GGTGA 3 cut(s) 513, 639, 656
AsuII TTCGAA 1 cut(s) 911
AvaII GGWCC 3 cut(s) 47, 343, 367
AxyI CCTNAGG 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 136
BaeI ACNNNNGTAYC 2 cut(s) 523, 556
BalI TGGCCA 1 cut(s) 953
BanI GGYRCC 2 cut(s) 107, 539
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
Bbv12I GWGCWC 1 cut(s) 904
BbvI GCAGC 2 cut(s) 778, 932
BccI CCATC 7 cut(s) 457, 526, 556, 565, 583, 788, 881
BcgI CGANNNNNNTGC 2 cut(s) 891, 925
BciT130I CCWGG 2 cut(s) 311, 738
BcnI CCSGG 3 cut(s) 192, 372, 414
BcoDI GTCTC 1 cut(s) 944
BfaI CTAG 1 cut(s) 729
BfmI CTRYAG 1 cut(s) 811
BfoI RGCGCY 2 cut(s) 72, 378
BisI GCNGC 4 cut(s) 93, 96, 767, 921
BlsI GCNGC 4 cut(s) 94, 97, 768, 922
Bme1390I CCNGG 5 cut(s) 192, 311, 372, 414, 738
Bme18I GGWCC 3 cut(s) 47, 343, 367
BmgT120I GGNCC 5 cut(s) 47, 90, 343, 367, 709
BmiI GGNNCC 5 cut(s) 91, 109, 369, 541, 860
BmrFI CCNGG 5 cut(s) 192, 311, 372, 414, 738
BmrI ACTGGG 2 cut(s) 314, 914
BmsI GCATC 2 cut(s) 29, 266
BmuI ACTGGG 2 cut(s) 314, 914
BpmI CTGGAG 1 cut(s) 676
Bpu14I TTCGAA 1 cut(s) 911
BpuEI CTTGAG 2 cut(s) 359, 953
BpuMI CCSGG 3 cut(s) 192, 372, 414
BsaJI CCNNGG 6 cut(s) 93, 145, 212, 370, 397, 737
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 418, 448
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 4 cut(s) 320, 643, 659, 909
Bse21I CCTNAGG 1 cut(s) 604
BseAI TCCGGA 1 cut(s) 364
BseBI CCWGG 2 cut(s) 311, 738
BseDI CCNNGG 6 cut(s) 93, 145, 212, 370, 397, 737
BseGI GGATG 2 cut(s) 315, 892
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 4 cut(s) 320, 643, 659, 909
BseRI GAGGAG 1 cut(s) 623
BseSI GKGCMC 1 cut(s) 136
BseX3I CGGCCG 1 cut(s) 13
BseXI GCAGC 2 cut(s) 778, 932
Bsh1236I CGCG 4 cut(s) 95, 198, 214, 789
Bsh1285I CGRYCG 3 cut(s) 12, 16, 54
BshFI GGCC 5 cut(s) 15, 92, 396, 711, 953
BshNI GGYRCC 2 cut(s) 107, 539
BsiEI CGRYCG 3 cut(s) 12, 16, 54
BsiHKAI GWGCWC 1 cut(s) 904
BsiSI CCGG 7 cut(s) 26, 45, 80, 191, 365, 372, 414
BsmAI GTCTC 1 cut(s) 944
BsmBI CGTCTC 1 cut(s) 944
BsnI GGCC 5 cut(s) 15, 92, 396, 711, 953
Bsp119I TTCGAA 1 cut(s) 911
Bsp1286I GDGCHC 2 cut(s) 136, 904
Bsp13I TCCGGA 1 cut(s) 364
Bsp143I GATC 4 cut(s) 9, 51, 76, 746
BspANI GGCC 5 cut(s) 15, 92, 396, 711, 953
BspCNI CTCAG 1 cut(s) 617
BspEI TCCGGA 1 cut(s) 364
BspFNI CGCG 4 cut(s) 95, 198, 214, 789
BspLI GGNNCC 5 cut(s) 91, 109, 369, 541, 860
BspPI GGATC 2 cut(s) 71, 754
BspT104I TTCGAA 1 cut(s) 911
BspT107I GGYRCC 2 cut(s) 107, 539
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 4 cut(s) 320, 643, 659, 909
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 6 cut(s) 93, 145, 212, 370, 397, 737
BssMI GATC 4 cut(s) 9, 51, 76, 746
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 311, 738
Bst4CI ACNGT 3 cut(s) 401, 536, 673
Bst6I CTCTTC 1 cut(s) 947
BstBI TTCGAA 1 cut(s) 911
BstC8I GCNNGC 2 cut(s) 771, 951
BstDEI CTNAG 2 cut(s) 221, 604
BstDSI CCRYGG 3 cut(s) 93, 212, 397
BstENI CCTNNNNNAGG 2 cut(s) 414, 655
BstF5I GGATG 2 cut(s) 315, 892
BstFNI CGCG 4 cut(s) 95, 198, 214, 789
BstH2I RGCGCY 2 cut(s) 72, 378
BstHHI GCGC 3 cut(s) 71, 377, 791
BstKTI GATC 4 cut(s) 12, 54, 79, 749
BstMAI GTCTC 1 cut(s) 944
BstMBI GATC 4 cut(s) 9, 51, 76, 746
BstMCI CGRYCG 3 cut(s) 12, 16, 54
BstMWI GCNNNNNNNGC 3 cut(s) 89, 170, 287
BstNI CCWGG 2 cut(s) 311, 738
BstSCI CCNGG 5 cut(s) 190, 309, 370, 412, 736
BstSFI CTRYAG 1 cut(s) 811
BstSLI GKGCMC 1 cut(s) 136
BstUI CGCG 4 cut(s) 95, 198, 214, 789
BstV1I GCAGC 2 cut(s) 778, 932
BstXI CCANNNNNNTGG 1 cut(s) 719
BstZI CGGCCG 1 cut(s) 13
Bsu36I CCTNAGG 1 cut(s) 604
BsuRI GGCC 5 cut(s) 15, 92, 396, 711, 953
BtgI CCRYGG 3 cut(s) 93, 212, 397
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 315, 892
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 3 cut(s) 134, 678, 902
Cac8I GCNNGC 2 cut(s) 771, 951
CfoI GCGC 3 cut(s) 71, 377, 791
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 5 cut(s) 47, 90, 343, 367, 709
Cfr42I CCGCGG 2 cut(s) 96, 215
CpoI CGGWCCG 1 cut(s) 47
CseI GACGC 1 cut(s) 187
CsiI ACCWGGT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 540
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CspI CGGWCCG 1 cut(s) 47
CviAII CATG 5 cut(s) 325, 473, 497, 713, 757
CviQI GTAC 1 cut(s) 540
DdeI CTNAG 2 cut(s) 221, 604
DpnI GATC 4 cut(s) 11, 53, 78, 748
DpnII GATC 4 cut(s) 9, 51, 76, 746
EaeI YGGCCR 2 cut(s) 13, 951
EagI CGGCCG 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 947
EarI CTCTTC 1 cut(s) 947
EciI GGCGGA 2 cut(s) 31, 179
EclXI CGGCCG 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 145
Eco47I GGWCC 3 cut(s) 47, 343, 367
Eco52I CGGCCG 1 cut(s) 13
Eco57I CTGAAG 2 cut(s) 375, 928
Eco81I CCTNAGG 1 cut(s) 604
EcoNI CCTNNNNNAGG 2 cut(s) 414, 655
EcoRII CCWGG 2 cut(s) 309, 736
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 944
FaeI CATG 5 cut(s) 328, 476, 500, 716, 760
FalI AAGNNNNNCTT 2 cut(s) 421, 453
FatI CATG 5 cut(s) 324, 472, 496, 712, 756
FauI CCCGC 4 cut(s) 122, 147, 207, 219
FauNDI CATATG 1 cut(s) 275
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 4 cut(s) 93, 96, 767, 921
FokI GGATG 2 cut(s) 302, 899
Fsp4HI GCNGC 4 cut(s) 93, 96, 767, 921
FspBI CTAG 1 cut(s) 729
GlaI GCGC 3 cut(s) 70, 376, 790
GluI GCNGC 4 cut(s) 93, 96, 767, 921
GsuI CTGGAG 1 cut(s) 676
HaeII RGCGCY 2 cut(s) 72, 378
HaeIII GGCC 5 cut(s) 15, 92, 396, 711, 953
HapII CCGG 7 cut(s) 26, 45, 80, 191, 365, 372, 414
HgaI GACGC 1 cut(s) 187
HhaI GCGC 3 cut(s) 71, 377, 791
Hin1II CATG 5 cut(s) 328, 476, 500, 716, 760
Hin6I GCGC 3 cut(s) 69, 375, 789
HinP1I GCGC 3 cut(s) 69, 375, 789
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 2 cut(s) 61, 661
HpaII CCGG 7 cut(s) 26, 45, 80, 191, 365, 372, 414
HphI GGTGA 3 cut(s) 513, 639, 656
Hpy166II GTNNAC 4 cut(s) 202, 330, 422, 850
Hpy188I TCNGA 6 cut(s) 51, 56, 66, 726, 746, 899
Hpy188III TCNNGA 2 cut(s) 365, 552
Hpy8I GTNNAC 4 cut(s) 202, 330, 422, 850
Hpy99I CGWCG 2 cut(s) 203, 206
HpyAV CCTTC 7 cut(s) 82, 399, 447, 537, 576, 743, 812
HpyCH4III ACNGT 3 cut(s) 401, 536, 673
HpyCH4V TGCA 3 cut(s) 20, 103, 766
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 170, 287
HpyF3I CTNAG 2 cut(s) 221, 604
Hsp92II CATG 5 cut(s) 328, 476, 500, 716, 760
HspAI GCGC 3 cut(s) 69, 375, 789
Kpn2I TCCGGA 1 cut(s) 364
KpnI GGTACC 1 cut(s) 543
KspI CCGCGG 2 cut(s) 96, 215
Kzo9I GATC 4 cut(s) 9, 51, 76, 746
LmnI GCTCC 2 cut(s) 66, 120
Lsp1109I GCAGC 2 cut(s) 778, 932
LweI GCATC 2 cut(s) 29, 266
MabI ACCWGGT 1 cut(s) 309
MaeI CTAG 1 cut(s) 729
MaeIII GTNAC 2 cut(s) 627, 645
MalI GATC 4 cut(s) 11, 53, 78, 748
MboI GATC 4 cut(s) 9, 51, 76, 746
MboII GAAGA 4 cut(s) 252, 255, 361, 934
MhlI GDGCHC 2 cut(s) 136, 904
MlsI TGGCCA 1 cut(s) 953
MluCI AATT 1 cut(s) 760
MluNI TGGCCA 1 cut(s) 953
MmeI TCCRAC 4 cut(s) 555, 608, 661, 804
Mox20I TGGCCA 1 cut(s) 953
MroI TCCGGA 1 cut(s) 364
MroXI GAANNNNTTC 1 cut(s) 826
MscI TGGCCA 1 cut(s) 953
Msp20I TGGCCA 1 cut(s) 953
MspA1I CMGCKG 2 cut(s) 95, 214
MspI CCGG 7 cut(s) 26, 45, 80, 191, 365, 372, 414
MspR9I CCNGG 5 cut(s) 192, 311, 372, 414, 738
MvaI CCWGG 2 cut(s) 311, 738
MvnI CGCG 4 cut(s) 95, 198, 214, 789
MwoI GCNNNNNNNGC 3 cut(s) 89, 170, 287
NciI CCSGG 3 cut(s) 192, 372, 414
NdeI CATATG 1 cut(s) 275
NdeII GATC 4 cut(s) 9, 51, 76, 746
NlaIII CATG 5 cut(s) 328, 476, 500, 716, 760
NlaIV GGNNCC 5 cut(s) 91, 109, 369, 541, 860
NmuCI GTSAC 1 cut(s) 645
NspV TTCGAA 1 cut(s) 911
PdmI GAANNNNTTC 1 cut(s) 826
PfeI GAWTC 2 cut(s) 61, 661
PflMI CCANNNNNTGG 1 cut(s) 310
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 4 cut(s) 94, 97, 768, 922
Ple19I CGATCG 2 cut(s) 12, 54
Psp6I CCWGG 2 cut(s) 309, 736
PspGI CCWGG 2 cut(s) 309, 736
PspN4I GGNNCC 5 cut(s) 91, 109, 369, 541, 860
PspPI GGNCC 5 cut(s) 47, 90, 343, 367, 709
PvuI CGATCG 2 cut(s) 12, 54
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
Rsr2I CGGWCCG 1 cut(s) 47
RsrII CGGWCCG 1 cut(s) 47
SacII CCGCGG 2 cut(s) 96, 215
SalI GTCGAC 1 cut(s) 200
SatI GCNGC 4 cut(s) 93, 96, 767, 921
Sau3AI GATC 4 cut(s) 9, 51, 76, 746
Sau96I GGNCC 5 cut(s) 47, 90, 343, 367, 709
ScrFI CCNGG 5 cut(s) 192, 311, 372, 414, 738
SduI GDGCHC 2 cut(s) 136, 904
SexAI ACCWGGT 1 cut(s) 309
SfaNI GCATC 2 cut(s) 29, 266
SfcI CTRYAG 1 cut(s) 811
Sfr303I CCGCGG 2 cut(s) 96, 215
SfuI TTCGAA 1 cut(s) 911
SgrBI CCGCGG 2 cut(s) 96, 215
SgrDI CGTCGACG 1 cut(s) 200
SinI GGWCC 3 cut(s) 47, 343, 367
SmlI CTYRAG 2 cut(s) 338, 968
SmoI CTYRAG 2 cut(s) 338, 968
Sse9I AATT 1 cut(s) 760
SspMI CTAG 1 cut(s) 729
StyD4I CCNGG 5 cut(s) 190, 309, 370, 412, 736
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 3 cut(s) 401, 536, 673
TaqI TCGA 3 cut(s) 75, 201, 911
TasI AATT 1 cut(s) 760
TauI GCSGC 2 cut(s) 95, 98
TfiI GAWTC 2 cut(s) 61, 661
TscAI CASTG 3 cut(s) 141, 678, 909
TseFI GTSAC 1 cut(s) 645
TseI GCWGC 2 cut(s) 766, 920
Tsp45I GTSAC 1 cut(s) 645
TspDTI ATGAA 3 cut(s) 262, 263, 773
TspGWI ACGGA 2 cut(s) 73, 606
TspRI CASTG 3 cut(s) 141, 678, 909
Van91I CCANNNNNTGG 1 cut(s) 310
VpaK11BI GGWCC 3 cut(s) 47, 343, 367
XagI CCTNNNNNAGG 2 cut(s) 414, 655
XapI RAATTY 1 cut(s) 760
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 826
XspI CTAG 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.