RLG00000020537

Protodermal factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015329
Physical Location & Seq
Reverse (-)
66072131 .. 66073279
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020537

Sequence Viewer

Length: 927 bp
ATGATGAACAAAGCATCTTCTTCTTTGTTCGTATGGGCTTTGGTTGCTGGTATGCTCTCCCACAACCTGGTCATCCCTGTCATGTCCACCACCCTTGAGGACCAGAAGAACTACTACACTCCGGACCCCGGCTCTGGAACTCCCCCTTCAGGCCACGGTGGAAGCCCTCCCGGAGGTTCACATACAAGTCCTCCTTCCCATACTCCATCTCATCATAACCCTCCCTCTCATGGAAGCTACAACCCTCCCTCTCATGGAAGCTACAACCCTCCCTCTCATGGAAGCTACAACCCTACACCATCACCACCTTCCAACTGTGGTACCCCACCATCAAGACCATCTACTCCTTCAACCCCATCAACCCCATCAACTCCAACCTACGGAACTCCACCCTCAGGCGGTAGCCCCCCTATCATTGTTACTCCTCCAACACCAGTCACCGTAAGCCCCCCTATCATTGTTACTCCTCCAACACCAGTCACCGTAAGCCCCCCAATCCCATTCATCGGAACTCCACCAATCGACCCCGGTACTCCAGGTGTTCCTACACCTCCCTATCTTCCTGATCCCAACTCCCCTCCCTTCACATGCACCTACTGGAGGAACCACCCCACAGTGATATGGGGTCTTGTGGGCTGGTTTGGAACTTTGGGCCATGCTTTTGGTCTGACTAGCCTTCCAGGGTTCGGATCAAGCACCATGAACTTGCAGCAAGCACTTTCCAACACTCGCGCCGATGGACTTGGGGAACTCTACAGAGAAGGAACTGCTTCCTTGCTCAACTCTATGGTGGACAACAGGTTCCATTTTACTACCAATCAAGTCAGGGATGGTTTCGTCAGAGCACTGGGTTCGAACAAGGCAGCAACAAATCAAGCTCGTCTCTTCAGGCTGGCCAACGAGGGAAAACTCAAGCCCAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

32.22

Weight (kDa)

9.17

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42840
fragaria_vesca FvH4_6g38100
malus_domestica MD09G1154000.v1.1 MD17G1140600.v1.1
prunus_persica Prupe.3G171000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151161
rosa_laevigata RLG00000020537
rosa_multiflora Rmu_co8431777.1_g000001 Rmu_sc0002298.1_g000018
rosa_roxburghii Rroxscaffold_2G00096690
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2AG485900 Rh2BG497800 Rh2CG471700 Rh2DG508700
rosa_wichuraiana Rw2G039790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 320
AccB7I CCANNNNNTGG 1 cut(s) 67
AccII CGCG 1 cut(s) 732
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 1 cut(s) 399
AclWI GGATC 2 cut(s) 560, 697
AcoI YGGCCR 1 cut(s) 894
AcuI CTGAAG 2 cut(s) 132, 871
AfaI GTAC 2 cut(s) 322, 532
AgsI TTSAA 1 cut(s) 351
AjnI CCWGG 3 cut(s) 66, 535, 679
AloI GAACNNNNNNTCC 2 cut(s) 785, 817
AluBI AGCT 5 cut(s) 237, 261, 285, 878, 923
AluI AGCT 5 cut(s) 237, 261, 285, 878, 923
Alw21I GWGCWC 1 cut(s) 847
Alw26I GTCTC 1 cut(s) 887
AlwI GGATC 2 cut(s) 560, 697
Aor13HI TCCGGA 1 cut(s) 121
AoxI GGCC 3 cut(s) 151, 652, 894
ApeKI GCWGC 2 cut(s) 709, 863
Asp700I GAANNNNTTC 1 cut(s) 769
Asp718I GGTACC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 734
AspS9I GGNCC 3 cut(s) 100, 124, 652
AsuC2I CCSGG 3 cut(s) 129, 171, 528
AsuHPI GGTGA 3 cut(s) 294, 430, 472
AsuII TTCGAA 1 cut(s) 854
AvaII GGWCC 2 cut(s) 100, 124
AxyI CCTNAGG 1 cut(s) 394
BaeI ACNNNNGTAYC 2 cut(s) 304, 337
BalI TGGCCA 1 cut(s) 896
BanI GGYRCC 1 cut(s) 320
BarI GAAGNNNNNNTAC 2 cut(s) 98, 130
Bbv12I GWGCWC 1 cut(s) 847
BbvI GCAGC 2 cut(s) 721, 875
BccI CCATC 8 cut(s) 214, 307, 337, 346, 364, 373, 731, 824
BcgI CGANNNNNNTGC 2 cut(s) 834, 868
BciT130I CCWGG 3 cut(s) 68, 537, 681
BcnI CCSGG 3 cut(s) 129, 171, 528
BcoDI GTCTC 1 cut(s) 887
BfaI CTAG 1 cut(s) 672
BfmI CTRYAG 1 cut(s) 754
BisI GCNGC 2 cut(s) 710, 864
BlsI GCNGC 2 cut(s) 711, 865
Bme1390I CCNGG 6 cut(s) 68, 129, 171, 528, 537, 681
Bme18I GGWCC 2 cut(s) 100, 124
BmgT120I GGNCC 3 cut(s) 100, 124, 652
BmiI GGNNCC 4 cut(s) 126, 322, 605, 803
BmrFI CCNGG 6 cut(s) 68, 129, 171, 528, 537, 681
BmrI ACTGGG 1 cut(s) 857
BmsI GCATC 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 857
BpmI CTGGAG 2 cut(s) 519, 619
Bpu14I TTCGAA 1 cut(s) 854
BpuEI CTTGAG 2 cut(s) 116, 896
BpuMI CCSGG 3 cut(s) 129, 171, 528
BsaJI CCNNGG 4 cut(s) 127, 154, 526, 680
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bse1I ACTGG 4 cut(s) 434, 476, 602, 852
Bse21I CCTNAGG 1 cut(s) 394
BseAI TCCGGA 1 cut(s) 121
BseBI CCWGG 3 cut(s) 68, 537, 681
BseDI CCNNGG 4 cut(s) 127, 154, 526, 680
BseGI GGATG 2 cut(s) 72, 835
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 4 cut(s) 434, 476, 602, 852
BseRI GAGGAG 2 cut(s) 414, 456
BseXI GCAGC 2 cut(s) 721, 875
Bsh1236I CGCG 1 cut(s) 732
BshFI GGCC 3 cut(s) 153, 654, 896
BshNI GGYRCC 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 847
BsiSI CCGG 4 cut(s) 122, 129, 171, 528
BsmAI GTCTC 1 cut(s) 887
BsmBI CGTCTC 1 cut(s) 887
BsnI GGCC 3 cut(s) 153, 654, 896
Bsp119I TTCGAA 1 cut(s) 854
Bsp1286I GDGCHC 1 cut(s) 847
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 2 cut(s) 565, 689
BspACI CCGC 1 cut(s) 399
BspANI GGCC 3 cut(s) 153, 654, 896
BspCNI CTCAG 1 cut(s) 407
BspEI TCCGGA 1 cut(s) 121
BspFNI CGCG 1 cut(s) 732
BspLI GGNNCC 4 cut(s) 126, 322, 605, 803
BspPI GGATC 2 cut(s) 560, 697
BspT104I TTCGAA 1 cut(s) 854
BspT107I GGYRCC 1 cut(s) 320
BsrI ACTGG 4 cut(s) 434, 476, 602, 852
BssECI CCNNGG 4 cut(s) 127, 154, 526, 680
BssMI GATC 2 cut(s) 565, 689
Bst2UI CCWGG 3 cut(s) 68, 537, 681
Bst4CI ACNGT 5 cut(s) 158, 317, 442, 484, 616
Bst6I CTCTTC 1 cut(s) 890
BstBI TTCGAA 1 cut(s) 854
BstC8I GCNNGC 2 cut(s) 714, 894
BstDEI CTNAG 1 cut(s) 394
BstDSI CCRYGG 1 cut(s) 154
BstENI CCTNNNNNAGG 2 cut(s) 171, 598
BstF5I GGATG 2 cut(s) 72, 835
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 2 cut(s) 568, 692
BstMAI GTCTC 1 cut(s) 887
BstMBI GATC 2 cut(s) 565, 689
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 3 cut(s) 68, 537, 681
BstNSI RCATGY 1 cut(s) 591
BstSCI CCNGG 6 cut(s) 66, 127, 169, 526, 535, 679
BstSFI CTRYAG 1 cut(s) 754
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 2 cut(s) 721, 875
BstXI CCANNNNNNTGG 1 cut(s) 662
Bsu36I CCTNAGG 1 cut(s) 394
BsuRI GGCC 3 cut(s) 153, 654, 896
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 2 cut(s) 72, 835
BtsIMutI CAGTG 2 cut(s) 621, 845
Cac8I GCNNGC 2 cut(s) 714, 894
CfoI GCGC 1 cut(s) 734
Cfr13I GGNCC 3 cut(s) 100, 124, 652
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 2 cut(s) 321, 531
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 7 cut(s) 82, 230, 254, 278, 588, 656, 700
CviQI GTAC 2 cut(s) 321, 531
DdeI CTNAG 1 cut(s) 394
DpnI GATC 2 cut(s) 567, 691
DpnII GATC 2 cut(s) 565, 689
EaeI YGGCCR 1 cut(s) 894
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
Eco47I GGWCC 2 cut(s) 100, 124
Eco57I CTGAAG 2 cut(s) 132, 871
Eco81I CCTNAGG 1 cut(s) 394
EcoNI CCTNNNNNAGG 2 cut(s) 171, 598
EcoRII CCWGG 3 cut(s) 66, 535, 679
Esp3I CGTCTC 1 cut(s) 887
FaeI CATG 7 cut(s) 85, 233, 257, 281, 591, 659, 703
FalI AAGNNNNNCTT 2 cut(s) 178, 210
FatI CATG 7 cut(s) 81, 229, 253, 277, 587, 655, 699
Fnu4HI GCNGC 2 cut(s) 710, 864
FokI GGATG 2 cut(s) 59, 842
Fsp4HI GCNGC 2 cut(s) 710, 864
FspBI CTAG 1 cut(s) 672
GlaI GCGC 1 cut(s) 733
GluI GCNGC 2 cut(s) 710, 864
GsuI CTGGAG 2 cut(s) 519, 619
HaeIII GGCC 3 cut(s) 153, 654, 896
HapII CCGG 4 cut(s) 122, 129, 171, 528
HhaI GCGC 1 cut(s) 734
Hin1II CATG 7 cut(s) 85, 233, 257, 281, 591, 659, 703
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HpaII CCGG 4 cut(s) 122, 129, 171, 528
HphI GGTGA 3 cut(s) 294, 430, 472
Hpy166II GTNNAC 3 cut(s) 87, 179, 793
Hpy188I TCNGA 4 cut(s) 509, 669, 689, 842
Hpy188III TCNNGA 4 cut(s) 122, 135, 333, 563
Hpy8I GTNNAC 3 cut(s) 87, 179, 793
HpyAV CCTTC 7 cut(s) 156, 204, 318, 357, 592, 686, 755
HpyCH4III ACNGT 5 cut(s) 158, 317, 442, 484, 616
HpyCH4V TGCA 2 cut(s) 591, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 394
Hsp92II CATG 7 cut(s) 85, 233, 257, 281, 591, 659, 703
HspAI GCGC 1 cut(s) 732
Kpn2I TCCGGA 1 cut(s) 121
KpnI GGTACC 1 cut(s) 324
Kzo9I GATC 2 cut(s) 565, 689
Lsp1109I GCAGC 2 cut(s) 721, 875
LweI GCATC 1 cut(s) 23
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 1 cut(s) 672
MaeIII GTNAC 4 cut(s) 418, 436, 460, 478
MalI GATC 2 cut(s) 567, 691
MboI GATC 2 cut(s) 565, 689
MboII GAAGA 5 cut(s) 9, 12, 118, 551, 877
MhlI GDGCHC 1 cut(s) 847
MlsI TGGCCA 1 cut(s) 896
MluNI TGGCCA 1 cut(s) 896
MmeI TCCRAC 5 cut(s) 336, 398, 452, 494, 747
Mox20I TGGCCA 1 cut(s) 896
MroI TCCGGA 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 769
MscI TGGCCA 1 cut(s) 896
Msp20I TGGCCA 1 cut(s) 896
MspI CCGG 4 cut(s) 122, 129, 171, 528
MspR9I CCNGG 6 cut(s) 68, 129, 171, 528, 537, 681
MvaI CCWGG 3 cut(s) 68, 537, 681
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 3 cut(s) 129, 171, 528
NdeII GATC 2 cut(s) 565, 689
NlaIII CATG 7 cut(s) 85, 233, 257, 281, 591, 659, 703
NlaIV GGNNCC 4 cut(s) 126, 322, 605, 803
NmuCI GTSAC 2 cut(s) 436, 478
NspI RCATGY 1 cut(s) 591
NspV TTCGAA 1 cut(s) 854
PdmI GAANNNNTTC 1 cut(s) 769
PflMI CCANNNNNTGG 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 2 cut(s) 711, 865
Psp6I CCWGG 3 cut(s) 66, 535, 679
PspGI CCWGG 3 cut(s) 66, 535, 679
PspN4I GGNNCC 4 cut(s) 126, 322, 605, 803
PspPI GGNCC 3 cut(s) 100, 124, 652
RsaI GTAC 2 cut(s) 322, 532
RsaNI GTAC 2 cut(s) 321, 531
SatI GCNGC 2 cut(s) 710, 864
Sau3AI GATC 2 cut(s) 565, 689
Sau96I GGNCC 3 cut(s) 100, 124, 652
ScrFI CCNGG 6 cut(s) 68, 129, 171, 528, 537, 681
SduI GDGCHC 1 cut(s) 847
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 1 cut(s) 754
SfuI TTCGAA 1 cut(s) 854
SinI GGWCC 2 cut(s) 100, 124
SmlI CTYRAG 2 cut(s) 95, 911
SmoI CTYRAG 2 cut(s) 95, 911
SsiI CCGC 1 cut(s) 399
SspMI CTAG 1 cut(s) 672
StyD4I CCNGG 6 cut(s) 66, 127, 169, 526, 535, 679
TaaI ACNGT 5 cut(s) 158, 317, 442, 484, 616
TaqI TCGA 2 cut(s) 522, 854
TscAI CASTG 2 cut(s) 621, 852
TseFI GTSAC 2 cut(s) 436, 478
TseI GCWGC 2 cut(s) 709, 863
Tsp45I GTSAC 2 cut(s) 436, 478
TspDTI ATGAA 3 cut(s) 20, 493, 716
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 2 cut(s) 621, 852
Van91I CCANNNNNTGG 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 100, 124
XagI CCTNNNNNAGG 2 cut(s) 171, 598
XceI RCATGY 1 cut(s) 591
XmnI GAANNNNTTC 1 cut(s) 769
XspI CTAG 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.