Rh2BG497800

Protodermal factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0015329
Physical Location & Seq
Reverse (-)
70344720 .. 70346073
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG497800.1

Sequence Viewer

Length: 888 bp
ATGGGTGCTGTGATGATGAACAAAGCATCTTCTTCTTTGTTCATATGGGCTTTGGTTGCTGGTATGCTCTCCCACAACCTGGTCATCCCTGTCATGTCCACCACCCTTGAGGACCAGAAGAACTACTACACTCCGGACCCCGGCGCTGGAACTCCCCCTTCAGGCCACGGTGGAAGCCCTCCCGGAGGTTCATATACAAGTCCTCCTTCCCATACACCATCTCATCATAACCCTCCCTCTCATGGAAGCTACAACCCTCCCTCTCATGGAAGCTACAATCCTCCATCTCATGGAAGCTACAACCCTACACCATCACCACCTTCCAACTGTGGTACCCCACCATCAAGACCATCTACTCCTTCAACCCCATCAACTCCAACCTACGGAACTCCACCCTCAAGCGGTAGCCCCCCTATCATTGTTACTCCTCCAACACCAGTCACCGTAAGCCCCCCAATCCCATTCATCGGAACTCCACCAATCGACCCCGGTACTCCAGGTGTTCCTACACCTCCCTATCTTCCTGATCCCAACTCCCCTCCCTTCACATGCACCTACTGGAGGAACCACCCCACAGTGATATGGGGTCTTGTGGGCTGGTTTGGAACTTTGGGCCATGCTTTTGGTCTGACTAGCCTTCCAGGGTTCGGATCAAGCACCGTGAATTTGCAGCAAGCACTTTCCAACACTCGCGCCGATGGACTTGGGGATCTCTACAGAGAAGGAACTGCTTCCTTGCTCAACTCTATGGTGGACAACAGGTTCCATTTTACTACCAAGCAAGTCAGGGATGGTTTCGTCAGAGCACTGGGTTCGAACAAGGCAGCAACAAATCAAGCTCGTCTCTTCAGGCTGGCCAACGAGGGAAAACTCAAGCCCAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

30.92

Weight (kDa)

9.3

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42840
fragaria_vesca FvH4_6g38100
malus_domestica MD09G1154000.v1.1 MD17G1140600.v1.1
prunus_persica Prupe.3G171000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151161
rosa_laevigata RLG00000020537
rosa_multiflora Rmu_co8431777.1_g000001 Rmu_sc0002298.1_g000018
rosa_roxburghii Rroxscaffold_2G00096690
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2AG485900 Rh2BG497800 Rh2CG471700 Rh2DG508700
rosa_wichuraiana Rw2G039790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 2 cut(s) 79, 290
AccII CGCG 1 cut(s) 693
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 1 cut(s) 402
AclWI GGATC 3 cut(s) 521, 658, 717
AcoI YGGCCR 1 cut(s) 855
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 2 cut(s) 144, 832
AfaI GTAC 2 cut(s) 334, 493
AgsI TTSAA 1 cut(s) 363
AjnI CCWGG 3 cut(s) 78, 496, 640
AloI GAACNNNNNNTCC 2 cut(s) 746, 778
AluBI AGCT 5 cut(s) 249, 273, 297, 839, 884
AluI AGCT 5 cut(s) 249, 273, 297, 839, 884
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 1 cut(s) 848
AlwI GGATC 3 cut(s) 521, 658, 717
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 3 cut(s) 163, 613, 855
ApeKI GCWGC 2 cut(s) 670, 824
ApoI RAATTY 1 cut(s) 664
Asp700I GAANNNNTTC 1 cut(s) 730
Asp718I GGTACC 1 cut(s) 332
AspLEI GCGC 2 cut(s) 146, 695
AspS9I GGNCC 3 cut(s) 112, 136, 613
AsuC2I CCSGG 3 cut(s) 141, 183, 489
AsuHPI GGTGA 2 cut(s) 306, 433
AsuII TTCGAA 1 cut(s) 815
AvaII GGWCC 2 cut(s) 112, 136
BaeI ACNNNNGTAYC 2 cut(s) 316, 349
BalI TGGCCA 1 cut(s) 857
BanI GGYRCC 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
Bbv12I GWGCWC 1 cut(s) 808
BbvI GCAGC 2 cut(s) 682, 836
BccI CCATC 8 cut(s) 226, 292, 319, 349, 358, 376, 692, 785
BcgI CGANNNNNNTGC 2 cut(s) 795, 829
BciT130I CCWGG 3 cut(s) 80, 498, 642
BcnI CCSGG 3 cut(s) 141, 183, 489
BcoDI GTCTC 1 cut(s) 848
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 1 cut(s) 715
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 2 cut(s) 671, 825
BlsI GCNGC 2 cut(s) 672, 826
Bme1390I CCNGG 6 cut(s) 80, 141, 183, 489, 498, 642
Bme18I GGWCC 2 cut(s) 112, 136
BmgT120I GGNCC 3 cut(s) 112, 136, 613
BmiI GGNNCC 4 cut(s) 138, 334, 566, 764
BmrFI CCNGG 6 cut(s) 80, 141, 183, 489, 498, 642
BmrI ACTGGG 1 cut(s) 818
BmsI GCATC 1 cut(s) 35
BmuI ACTGGG 1 cut(s) 818
BpmI CTGGAG 2 cut(s) 480, 580
Bpu14I TTCGAA 1 cut(s) 815
BpuEI CTTGAG 3 cut(s) 128, 382, 857
BpuMI CCSGG 3 cut(s) 141, 183, 489
BsaJI CCNNGG 4 cut(s) 139, 166, 487, 641
BsaWI WCCGGW 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bse1I ACTGG 3 cut(s) 437, 563, 813
BseAI TCCGGA 1 cut(s) 133
BseBI CCWGG 3 cut(s) 80, 498, 642
BseDI CCNNGG 4 cut(s) 139, 166, 487, 641
BseGI GGATG 2 cut(s) 84, 796
BseNI ACTGG 3 cut(s) 437, 563, 813
BseRI GAGGAG 1 cut(s) 417
BseXI GCAGC 2 cut(s) 682, 836
Bsh1236I CGCG 1 cut(s) 693
BshFI GGCC 3 cut(s) 165, 615, 857
BshNI GGYRCC 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 808
BsiSI CCGG 4 cut(s) 134, 141, 183, 489
BsmAI GTCTC 1 cut(s) 848
BsmBI CGTCTC 1 cut(s) 848
BsnI GGCC 3 cut(s) 165, 615, 857
Bsp119I TTCGAA 1 cut(s) 815
Bsp1286I GDGCHC 1 cut(s) 808
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 3 cut(s) 526, 650, 709
BspACI CCGC 1 cut(s) 402
BspANI GGCC 3 cut(s) 165, 615, 857
BspEI TCCGGA 1 cut(s) 133
BspFNI CGCG 1 cut(s) 693
BspLI GGNNCC 4 cut(s) 138, 334, 566, 764
BspPI GGATC 3 cut(s) 521, 658, 717
BspT104I TTCGAA 1 cut(s) 815
BspT107I GGYRCC 1 cut(s) 332
BsrI ACTGG 3 cut(s) 437, 563, 813
BssECI CCNNGG 4 cut(s) 139, 166, 487, 641
BssMI GATC 3 cut(s) 526, 650, 709
Bst2UI CCWGG 3 cut(s) 80, 498, 642
Bst4CI ACNGT 5 cut(s) 170, 329, 445, 577, 661
Bst6I CTCTTC 1 cut(s) 851
BstBI TTCGAA 1 cut(s) 815
BstC8I GCNNGC 2 cut(s) 675, 855
BstDSI CCRYGG 1 cut(s) 166
BstENI CCTNNNNNAGG 2 cut(s) 183, 559
BstF5I GGATG 2 cut(s) 84, 796
BstFNI CGCG 1 cut(s) 693
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 146, 695
BstKTI GATC 3 cut(s) 529, 653, 712
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 3 cut(s) 526, 650, 709
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 3 cut(s) 80, 498, 642
BstNSI RCATGY 1 cut(s) 552
BstSCI CCNGG 6 cut(s) 78, 139, 181, 487, 496, 640
BstSFI CTRYAG 1 cut(s) 715
BstUI CGCG 1 cut(s) 693
BstV1I GCAGC 2 cut(s) 682, 836
BstX2I RGATCY 1 cut(s) 709
BstXI CCANNNNNNTGG 1 cut(s) 623
BstYI RGATCY 1 cut(s) 709
BsuRI GGCC 3 cut(s) 165, 615, 857
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 84, 796
BtsIMutI CAGTG 2 cut(s) 582, 806
Cac8I GCNNGC 2 cut(s) 675, 855
CfoI GCGC 2 cut(s) 146, 695
Cfr13I GGNCC 3 cut(s) 112, 136, 613
CsiI ACCWGGT 1 cut(s) 78
Csp6I GTAC 2 cut(s) 333, 492
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 6 cut(s) 94, 242, 266, 290, 549, 617
CviQI GTAC 2 cut(s) 333, 492
DpnI GATC 3 cut(s) 528, 652, 711
DpnII GATC 3 cut(s) 526, 650, 709
EaeI YGGCCR 1 cut(s) 855
Eam1104I CTCTTC 1 cut(s) 851
EarI CTCTTC 1 cut(s) 851
Eco47I GGWCC 2 cut(s) 112, 136
Eco57I CTGAAG 2 cut(s) 144, 832
EcoNI CCTNNNNNAGG 2 cut(s) 183, 559
EcoRII CCWGG 3 cut(s) 78, 496, 640
Esp3I CGTCTC 1 cut(s) 848
FaeI CATG 6 cut(s) 97, 245, 269, 293, 552, 620
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 6 cut(s) 93, 241, 265, 289, 548, 616
FauNDI CATATG 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 671, 825
FokI GGATG 2 cut(s) 71, 803
Fsp4HI GCNGC 2 cut(s) 671, 825
FspBI CTAG 1 cut(s) 633
GlaI GCGC 2 cut(s) 145, 694
GluI GCNGC 2 cut(s) 671, 825
GsuI CTGGAG 2 cut(s) 480, 580
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 3 cut(s) 165, 615, 857
HapII CCGG 4 cut(s) 134, 141, 183, 489
HhaI GCGC 2 cut(s) 146, 695
Hin1II CATG 6 cut(s) 97, 245, 269, 293, 552, 620
Hin6I GCGC 2 cut(s) 144, 693
HinP1I GCGC 2 cut(s) 144, 693
HpaII CCGG 4 cut(s) 134, 141, 183, 489
HphI GGTGA 2 cut(s) 306, 433
Hpy166II GTNNAC 2 cut(s) 99, 754
Hpy188I TCNGA 4 cut(s) 470, 630, 650, 803
Hpy188III TCNNGA 3 cut(s) 134, 345, 524
Hpy8I GTNNAC 2 cut(s) 99, 754
HpyAV CCTTC 7 cut(s) 168, 216, 330, 369, 553, 647, 716
HpyCH4III ACNGT 5 cut(s) 170, 329, 445, 577, 661
HpyCH4V TGCA 2 cut(s) 552, 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
Hsp92II CATG 6 cut(s) 97, 245, 269, 293, 552, 620
HspAI GCGC 2 cut(s) 144, 693
Kpn2I TCCGGA 1 cut(s) 133
KpnI GGTACC 1 cut(s) 336
Kzo9I GATC 3 cut(s) 526, 650, 709
Lsp1109I GCAGC 2 cut(s) 682, 836
LweI GCATC 1 cut(s) 35
MabI ACCWGGT 1 cut(s) 78
MaeI CTAG 1 cut(s) 633
MaeIII GTNAC 2 cut(s) 421, 439
MalI GATC 3 cut(s) 528, 652, 711
MboI GATC 3 cut(s) 526, 650, 709
MboII GAAGA 5 cut(s) 21, 24, 130, 512, 838
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 1 cut(s) 808
MlsI TGGCCA 1 cut(s) 857
MluCI AATT 1 cut(s) 664
MluNI TGGCCA 1 cut(s) 857
MmeI TCCRAC 4 cut(s) 348, 401, 455, 708
Mox20I TGGCCA 1 cut(s) 857
MroI TCCGGA 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 730
MscI TGGCCA 1 cut(s) 857
Msp20I TGGCCA 1 cut(s) 857
MspI CCGG 4 cut(s) 134, 141, 183, 489
MspR9I CCNGG 6 cut(s) 80, 141, 183, 489, 498, 642
MvaI CCWGG 3 cut(s) 80, 498, 642
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 3 cut(s) 141, 183, 489
NdeI CATATG 1 cut(s) 44
NdeII GATC 3 cut(s) 526, 650, 709
NlaIII CATG 6 cut(s) 97, 245, 269, 293, 552, 620
NlaIV GGNNCC 4 cut(s) 138, 334, 566, 764
NmuCI GTSAC 1 cut(s) 439
NspI RCATGY 1 cut(s) 552
NspV TTCGAA 1 cut(s) 815
PdmI GAANNNNTTC 1 cut(s) 730
PflMI CCANNNNNTGG 2 cut(s) 79, 290
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 2 cut(s) 672, 826
Psp6I CCWGG 3 cut(s) 78, 496, 640
PspGI CCWGG 3 cut(s) 78, 496, 640
PspN4I GGNNCC 4 cut(s) 138, 334, 566, 764
PspPI GGNCC 3 cut(s) 112, 136, 613
PsuI RGATCY 1 cut(s) 709
RsaI GTAC 2 cut(s) 334, 493
RsaNI GTAC 2 cut(s) 333, 492
SatI GCNGC 2 cut(s) 671, 825
Sau3AI GATC 3 cut(s) 526, 650, 709
Sau96I GGNCC 3 cut(s) 112, 136, 613
ScrFI CCNGG 6 cut(s) 80, 141, 183, 489, 498, 642
SduI GDGCHC 1 cut(s) 808
SexAI ACCWGGT 1 cut(s) 78
SfaNI GCATC 1 cut(s) 35
SfcI CTRYAG 1 cut(s) 715
SfuI TTCGAA 1 cut(s) 815
SinI GGWCC 2 cut(s) 112, 136
SmlI CTYRAG 3 cut(s) 107, 397, 872
SmoI CTYRAG 3 cut(s) 107, 397, 872
Sse9I AATT 1 cut(s) 664
SsiI CCGC 1 cut(s) 402
SspMI CTAG 1 cut(s) 633
StyD4I CCNGG 6 cut(s) 78, 139, 181, 487, 496, 640
TaaI ACNGT 5 cut(s) 170, 329, 445, 577, 661
TaqI TCGA 2 cut(s) 483, 815
TasI AATT 1 cut(s) 664
TscAI CASTG 2 cut(s) 582, 813
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 2 cut(s) 670, 824
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 4 cut(s) 31, 32, 180, 454
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 2 cut(s) 582, 813
Van91I CCANNNNNTGG 2 cut(s) 79, 290
VpaK11BI GGWCC 2 cut(s) 112, 136
XagI CCTNNNNNAGG 2 cut(s) 183, 559
XapI RAATTY 1 cut(s) 664
XceI RCATGY 1 cut(s) 552
XmnI GAANNNNTTC 1 cut(s) 730
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.