Rw2G039790

Protodermal factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015329
Physical Location & Seq
Reverse (-)
65289945 .. 65291384
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039790.1

Sequence Viewer

Length: 864 bp
ATGGGTGCTGTGATGATGAACAAAGCATCTTCTTCTTTGTTCATATGGGCTTTGGTTGCTGGTATGCTCTCCCACAACCTGGTCATCCCTGTCATGTCCACCACCCTTGGGGACCAGAAGAACTACTACACTCCGGACCCCGGCGCTGGAACTCCCCCTTCAGGCCACGGTGGAAGCCCTCCCGGAGGTTCATATACAAGTCCTCCTTCCCATACACCATCTCATCATAACCCTCCCTCTCATGGAAGCTACAACCCTCCCTCTCATGGAAGCTACAACCCTACACCATCACCACCTTCCAACTGTGGTACCCCACCATCAAGACCATCTACTCCTTCAACCCCATCAACTCCAACCTACGGAACTCCACCCTCAAGCGGTAGCCCCCCTATCATTGTTACTCCTCCAACACCAGTCACCGTAAGCCCCCCAATCCCATTCATCGGAACTCCACCAATCGACCCCGGTACTCCAGGTGTTCCTACACCTCCCTATCTTCCTGATCCCAACTCCCCTCCCTTCACATGCACCTACTGGAGGAACCACCCCACAGTGATATGGGGTCTTGTGGGCTGGTTTGGAACTTTGGGCCATGCTTTTGGTCTGACTAGCCTTCCAGGGTTCGGATCAAGCACCGTGAATTTGCAGCAAGCACTTTCCAACACTCGCACCGATGGACTTGGGGAACTCTACAGAGAAGGAACTGCTTCCTTGCTCAACTCTATGGTGGACAACAGGTTCCATTTTACTACCAAGCAAGTCAGGGATGGTTTCGTCAGAGCTCTGGGTTCGAACAAGGCAGCAACAAATCAAGCTCGTCTCTTCAGGCTGGCCAACGAGGGAAAACTCAAGCCCAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

30.05

Weight (kDa)

9.48

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42840
fragaria_vesca FvH4_6g38100
malus_domestica MD09G1154000.v1.1 MD17G1140600.v1.1
prunus_persica Prupe.3G171000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151161
rosa_laevigata RLG00000020537
rosa_multiflora Rmu_co8431777.1_g000001 Rmu_sc0002298.1_g000018
rosa_roxburghii Rroxscaffold_2G00096690
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2AG485900 Rh2BG497800 Rh2CG471700 Rh2DG508700
rosa_wichuraiana Rw2G039790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 79
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 1 cut(s) 378
AclWI GGATC 2 cut(s) 497, 634
AcoI YGGCCR 1 cut(s) 831
AcsI RAATTY 1 cut(s) 640
AcuI CTGAAG 2 cut(s) 144, 808
AfaI GTAC 2 cut(s) 310, 469
AgsI TTSAA 1 cut(s) 339
AjnI CCWGG 3 cut(s) 78, 472, 616
AloI GAACNNNNNNTCC 2 cut(s) 722, 754
AluBI AGCT 5 cut(s) 249, 273, 782, 815, 860
AluI AGCT 5 cut(s) 249, 273, 782, 815, 860
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 1 cut(s) 824
AlwI GGATC 2 cut(s) 497, 634
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 3 cut(s) 163, 589, 831
ApeKI GCWGC 2 cut(s) 646, 800
ApoI RAATTY 1 cut(s) 640
Asp700I GAANNNNTTC 1 cut(s) 706
Asp718I GGTACC 1 cut(s) 308
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 112, 136, 589
AsuC2I CCSGG 3 cut(s) 141, 183, 465
AsuHPI GGTGA 2 cut(s) 282, 409
AsuII TTCGAA 1 cut(s) 791
AvaII GGWCC 2 cut(s) 112, 136
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BalI TGGCCA 1 cut(s) 833
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 784
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 2 cut(s) 658, 812
BccI CCATC 7 cut(s) 226, 295, 325, 334, 352, 668, 761
BciT130I CCWGG 3 cut(s) 80, 474, 618
BcnI CCSGG 3 cut(s) 141, 183, 465
BcoDI GTCTC 1 cut(s) 824
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 1 cut(s) 691
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 2 cut(s) 647, 801
BlsI GCNGC 2 cut(s) 648, 802
Bme1390I CCNGG 6 cut(s) 80, 141, 183, 465, 474, 618
Bme18I GGWCC 2 cut(s) 112, 136
BmgT120I GGNCC 3 cut(s) 112, 136, 589
BmiI GGNNCC 5 cut(s) 113, 138, 310, 542, 740
BmrFI CCNGG 6 cut(s) 80, 141, 183, 465, 474, 618
BmsI GCATC 1 cut(s) 35
BpmI CTGGAG 2 cut(s) 456, 556
Bpu14I TTCGAA 1 cut(s) 791
BpuEI CTTGAG 2 cut(s) 358, 833
BpuMI CCSGG 3 cut(s) 141, 183, 465
BsaJI CCNNGG 5 cut(s) 106, 139, 166, 463, 617
BsaWI WCCGGW 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bse1I ACTGG 2 cut(s) 413, 539
BseAI TCCGGA 1 cut(s) 133
BseBI CCWGG 3 cut(s) 80, 474, 618
BseDI CCNNGG 5 cut(s) 106, 139, 166, 463, 617
BseGI GGATG 2 cut(s) 84, 772
BseNI ACTGG 2 cut(s) 413, 539
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 658, 812
BshFI GGCC 3 cut(s) 165, 591, 833
BshNI GGYRCC 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 784
BsiSI CCGG 4 cut(s) 134, 141, 183, 465
BslFI GGGAC 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 824
BsmBI CGTCTC 1 cut(s) 824
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 3 cut(s) 165, 591, 833
Bsp119I TTCGAA 1 cut(s) 791
Bsp1286I GDGCHC 1 cut(s) 784
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 2 cut(s) 502, 626
BspACI CCGC 1 cut(s) 378
BspANI GGCC 3 cut(s) 165, 591, 833
BspEI TCCGGA 1 cut(s) 133
BspLI GGNNCC 5 cut(s) 113, 138, 310, 542, 740
BspPI GGATC 2 cut(s) 497, 634
BspT104I TTCGAA 1 cut(s) 791
BspT107I GGYRCC 1 cut(s) 308
BsrI ACTGG 2 cut(s) 413, 539
BssECI CCNNGG 5 cut(s) 106, 139, 166, 463, 617
BssMI GATC 2 cut(s) 502, 626
BssT1I CCWWGG 1 cut(s) 106
Bst2UI CCWGG 3 cut(s) 80, 474, 618
Bst4CI ACNGT 5 cut(s) 170, 305, 421, 553, 637
Bst6I CTCTTC 1 cut(s) 827
BstBI TTCGAA 1 cut(s) 791
BstC8I GCNNGC 2 cut(s) 651, 831
BstDSI CCRYGG 1 cut(s) 166
BstENI CCTNNNNNAGG 2 cut(s) 183, 535
BstF5I GGATG 2 cut(s) 84, 772
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 2 cut(s) 505, 629
BstMAI GTCTC 1 cut(s) 824
BstMBI GATC 2 cut(s) 502, 626
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 3 cut(s) 80, 474, 618
BstNSI RCATGY 1 cut(s) 528
BstSCI CCNGG 6 cut(s) 78, 139, 181, 463, 472, 616
BstSFI CTRYAG 1 cut(s) 691
BstV1I GCAGC 2 cut(s) 658, 812
BstXI CCANNNNNNTGG 1 cut(s) 599
BsuRI GGCC 3 cut(s) 165, 591, 833
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 84, 772
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 2 cut(s) 651, 831
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 112, 136, 589
CsiI ACCWGGT 1 cut(s) 78
Csp6I GTAC 2 cut(s) 309, 468
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 5 cut(s) 94, 242, 266, 525, 593
CviQI GTAC 2 cut(s) 309, 468
DpnI GATC 2 cut(s) 504, 628
DpnII GATC 2 cut(s) 502, 626
EaeI YGGCCR 1 cut(s) 831
Eam1104I CTCTTC 1 cut(s) 827
EarI CTCTTC 1 cut(s) 827
Ecl136II GAGCTC 1 cut(s) 782
Eco130I CCWWGG 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 784
Eco47I GGWCC 2 cut(s) 112, 136
Eco53kI GAGCTC 1 cut(s) 782
Eco57I CTGAAG 2 cut(s) 144, 808
EcoICRI GAGCTC 1 cut(s) 782
EcoNI CCTNNNNNAGG 2 cut(s) 183, 535
EcoRII CCWGG 3 cut(s) 78, 472, 616
EcoT14I CCWWGG 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 784
ErhI CCWWGG 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 824
FaeI CATG 5 cut(s) 97, 245, 269, 528, 596
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FaqI GGGAC 1 cut(s) 125
FatI CATG 5 cut(s) 93, 241, 265, 524, 592
FauNDI CATATG 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 647, 801
FokI GGATG 2 cut(s) 71, 779
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 2 cut(s) 647, 801
FspBI CTAG 1 cut(s) 609
GlaI GCGC 1 cut(s) 145
GluI GCNGC 2 cut(s) 647, 801
GsuI CTGGAG 2 cut(s) 456, 556
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 3 cut(s) 165, 591, 833
HapII CCGG 4 cut(s) 134, 141, 183, 465
HhaI GCGC 1 cut(s) 146
Hin1II CATG 5 cut(s) 97, 245, 269, 528, 596
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HpaII CCGG 4 cut(s) 134, 141, 183, 465
HphI GGTGA 2 cut(s) 282, 409
Hpy166II GTNNAC 2 cut(s) 99, 730
Hpy188I TCNGA 4 cut(s) 446, 606, 626, 779
Hpy188III TCNNGA 3 cut(s) 134, 321, 500
Hpy8I GTNNAC 2 cut(s) 99, 730
HpyAV CCTTC 7 cut(s) 168, 216, 306, 345, 529, 623, 692
HpyCH4III ACNGT 5 cut(s) 170, 305, 421, 553, 637
HpyCH4V TGCA 2 cut(s) 528, 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
Hsp92II CATG 5 cut(s) 97, 245, 269, 528, 596
HspAI GCGC 1 cut(s) 144
Kpn2I TCCGGA 1 cut(s) 133
KpnI GGTACC 1 cut(s) 312
Kzo9I GATC 2 cut(s) 502, 626
Lsp1109I GCAGC 2 cut(s) 658, 812
LweI GCATC 1 cut(s) 35
MabI ACCWGGT 1 cut(s) 78
MaeI CTAG 1 cut(s) 609
MaeIII GTNAC 2 cut(s) 397, 415
MalI GATC 2 cut(s) 504, 628
MboI GATC 2 cut(s) 502, 626
MboII GAAGA 5 cut(s) 21, 24, 130, 488, 814
MhlI GDGCHC 1 cut(s) 784
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 1 cut(s) 640
MluNI TGGCCA 1 cut(s) 833
MmeI TCCRAC 4 cut(s) 324, 377, 431, 684
Mox20I TGGCCA 1 cut(s) 833
MroI TCCGGA 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 706
MscI TGGCCA 1 cut(s) 833
Msp20I TGGCCA 1 cut(s) 833
MspI CCGG 4 cut(s) 134, 141, 183, 465
MspR9I CCNGG 6 cut(s) 80, 141, 183, 465, 474, 618
MvaI CCWGG 3 cut(s) 80, 474, 618
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 3 cut(s) 141, 183, 465
NdeI CATATG 1 cut(s) 44
NdeII GATC 2 cut(s) 502, 626
NlaIII CATG 5 cut(s) 97, 245, 269, 528, 596
NlaIV GGNNCC 5 cut(s) 113, 138, 310, 542, 740
NmuCI GTSAC 1 cut(s) 415
NspI RCATGY 1 cut(s) 528
NspV TTCGAA 1 cut(s) 791
PdmI GAANNNNTTC 1 cut(s) 706
PflMI CCANNNNNTGG 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 2 cut(s) 648, 802
Psp124BI GAGCTC 1 cut(s) 784
Psp6I CCWGG 3 cut(s) 78, 472, 616
PspGI CCWGG 3 cut(s) 78, 472, 616
PspN4I GGNNCC 5 cut(s) 113, 138, 310, 542, 740
PspPI GGNCC 3 cut(s) 112, 136, 589
RsaI GTAC 2 cut(s) 310, 469
RsaNI GTAC 2 cut(s) 309, 468
SacI GAGCTC 1 cut(s) 784
SatI GCNGC 2 cut(s) 647, 801
Sau3AI GATC 2 cut(s) 502, 626
Sau96I GGNCC 3 cut(s) 112, 136, 589
ScrFI CCNGG 6 cut(s) 80, 141, 183, 465, 474, 618
SduI GDGCHC 1 cut(s) 784
SexAI ACCWGGT 1 cut(s) 78
SfaNI GCATC 1 cut(s) 35
SfcI CTRYAG 1 cut(s) 691
SfuI TTCGAA 1 cut(s) 791
SinI GGWCC 2 cut(s) 112, 136
SmlI CTYRAG 2 cut(s) 373, 848
SmoI CTYRAG 2 cut(s) 373, 848
Sse9I AATT 1 cut(s) 640
SsiI CCGC 1 cut(s) 378
SspMI CTAG 1 cut(s) 609
SstI GAGCTC 1 cut(s) 784
StyD4I CCNGG 6 cut(s) 78, 139, 181, 463, 472, 616
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 5 cut(s) 170, 305, 421, 553, 637
TaqI TCGA 2 cut(s) 459, 791
TasI AATT 1 cut(s) 640
TscAI CASTG 1 cut(s) 558
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 2 cut(s) 646, 800
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 4 cut(s) 31, 32, 180, 430
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 1 cut(s) 558
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 2 cut(s) 112, 136
XagI CCTNNNNNAGG 2 cut(s) 183, 535
XapI RAATTY 1 cut(s) 640
XceI RCATGY 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 706
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.