Rmu_sc0002298.1_g000018

Protodermal factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002298.1
OG0015329
Physical Location & Seq
Forward (+)
68509 .. 69245
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002298.1_g000018.1.cds

Sequence Viewer

Length: 651 bp
atgcttgttgtcatttcgatggaggggaggaggagcaccaatcctccatctcatggaagctacaaccctacaccatcaccaccttccaactgtggtaccccaccatcaagaccatctactccttcaaccccatcaactccaacctacggaactccaccctcaagcggtagcccccctatcattgttactcctccaacaccagtcaccgtaagccccccaatcccattcatcggaactccaccaatcgaccccggtactccaggtgttcctacacctccctatcttcctgatcccaactcccctcccttcacatgcacctactggaggaaccaccccacagtgatatggggtcttgtgggctggtttggaactttgggccatgcttttggtctgactagccttccagggttcggatcaagcaccgtgaatttgcagcaagcactttccaacactcgcgccgatggacttggggatctctacagagaaggaactgcttccttgctcaactctatggtggacaacaggttccattttactaccaagcaagtcagggatggtttcgtcagagcactgggttcgaacaaggcagcaacaaatcaagctcgtctcttcaggctggccaacgagggaaaactcaagcccagagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

22.85

Weight (kDa)

9.93

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42840
fragaria_vesca FvH4_6g38100
malus_domestica MD09G1154000.v1.1 MD17G1140600.v1.1
prunus_persica Prupe.3G171000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151161
rosa_laevigata RLG00000020537
rosa_multiflora Rmu_co8431777.1_g000001 Rmu_sc0002298.1_g000018
rosa_roxburghii Rroxscaffold_2G00096690
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2AG485900 Rh2BG497800 Rh2CG471700 Rh2DG508700
rosa_wichuraiana Rw2G039790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 53
AccII CGCG 1 cut(s) 456
AciI CCGC 1 cut(s) 165
AclWI GGATC 3 cut(s) 284, 421, 480
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 595
AfaI GTAC 2 cut(s) 97, 256
AfiI CCNNNNNNNGG 6 cut(s) 53, 146, 164, 230, 324, 410
AgsI TTSAA 1 cut(s) 126
AjnI CCWGG 2 cut(s) 259, 403
AloI GAACNNNNNNTCC 2 cut(s) 509, 541
AluBI AGCT 3 cut(s) 60, 602, 647
AluI AGCT 3 cut(s) 60, 602, 647
Alw21I GWGCWC 2 cut(s) 38, 571
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 3 cut(s) 284, 421, 480
AoxI GGCC 2 cut(s) 376, 618
ApeKI GCWGC 2 cut(s) 433, 587
ApoI RAATTY 1 cut(s) 427
Asp700I GAANNNNTTC 1 cut(s) 493
Asp718I GGTACC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 376
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 2 cut(s) 69, 196
AsuII TTCGAA 1 cut(s) 578
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BalI TGGCCA 1 cut(s) 620
BanI GGYRCC 1 cut(s) 95
Bbv12I GWGCWC 2 cut(s) 38, 571
BbvI GCAGC 2 cut(s) 445, 599
BccI CCATC 8 cut(s) 13, 55, 82, 112, 121, 139, 455, 548
BcgI CGANNNNNNTGC 2 cut(s) 558, 592
BciT130I CCWGG 2 cut(s) 261, 405
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 478
BisI GCNGC 2 cut(s) 434, 588
BlsI GCNGC 2 cut(s) 435, 589
Bme1390I CCNGG 3 cut(s) 252, 261, 405
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 3 cut(s) 97, 329, 527
BmrFI CCNGG 3 cut(s) 252, 261, 405
BmrI ACTGGG 1 cut(s) 581
BmuI ACTGGG 1 cut(s) 581
BpmI CTGGAG 2 cut(s) 243, 343
Bpu14I TTCGAA 1 cut(s) 578
BpuEI CTTGAG 2 cut(s) 145, 620
BpuMI CCSGG 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 250, 404
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 6 cut(s) 53, 146, 164, 230, 324, 410
Bse1I ACTGG 3 cut(s) 200, 326, 576
BseBI CCWGG 2 cut(s) 261, 405
BseDI CCNNGG 2 cut(s) 250, 404
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 6 cut(s) 53, 146, 164, 230, 324, 410
BseNI ACTGG 3 cut(s) 200, 326, 576
BseRI GAGGAG 3 cut(s) 43, 46, 180
BseXI GCAGC 2 cut(s) 445, 599
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 2 cut(s) 378, 620
BshNI GGYRCC 1 cut(s) 95
BsiHKAI GWGCWC 2 cut(s) 38, 571
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 6 cut(s) 53, 146, 164, 230, 324, 410
BsmAI GTCTC 1 cut(s) 611
BsmBI CGTCTC 1 cut(s) 611
BsnI GGCC 2 cut(s) 378, 620
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 38, 571
Bsp143I GATC 3 cut(s) 289, 413, 472
BspACI CCGC 1 cut(s) 165
BspANI GGCC 2 cut(s) 378, 620
BspFNI CGCG 1 cut(s) 456
BspLI GGNNCC 3 cut(s) 97, 329, 527
BspPI GGATC 3 cut(s) 284, 421, 480
BspT104I TTCGAA 1 cut(s) 578
BspT107I GGYRCC 1 cut(s) 95
BsrI ACTGG 3 cut(s) 200, 326, 576
BssECI CCNNGG 2 cut(s) 250, 404
BssMI GATC 3 cut(s) 289, 413, 472
Bst2UI CCWGG 2 cut(s) 261, 405
Bst4CI ACNGT 4 cut(s) 92, 208, 340, 424
Bst6I CTCTTC 1 cut(s) 614
BstBI TTCGAA 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 438, 618
BstENI CCTNNNNNAGG 1 cut(s) 322
BstF5I GGATG 1 cut(s) 559
BstFNI CGCG 1 cut(s) 456
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 3 cut(s) 292, 416, 475
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 3 cut(s) 289, 413, 472
BstNI CCWGG 2 cut(s) 261, 405
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 3 cut(s) 250, 259, 403
BstSFI CTRYAG 1 cut(s) 478
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 2 cut(s) 445, 599
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 386
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 2 cut(s) 378, 620
BtsCI GGATG 1 cut(s) 559
BtsIMutI CAGTG 2 cut(s) 345, 569
Cac8I GCNNGC 2 cut(s) 438, 618
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 376
Csp6I GTAC 2 cut(s) 96, 255
CviAII CATG 3 cut(s) 53, 312, 380
CviQI GTAC 2 cut(s) 96, 255
DpnI GATC 3 cut(s) 291, 415, 474
DpnII GATC 3 cut(s) 289, 413, 472
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
Eco57I CTGAAG 1 cut(s) 595
EcoNI CCTNNNNNAGG 1 cut(s) 322
EcoRII CCWGG 2 cut(s) 259, 403
Esp3I CGTCTC 1 cut(s) 611
FaeI CATG 3 cut(s) 56, 315, 383
FaiI YATR 5 cut(s) 54, 313, 346, 381, 512
FatI CATG 3 cut(s) 52, 311, 379
Fnu4HI GCNGC 2 cut(s) 434, 588
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 2 cut(s) 434, 588
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 457
GluI GCNGC 2 cut(s) 434, 588
GsuI CTGGAG 2 cut(s) 243, 343
HaeIII GGCC 2 cut(s) 378, 620
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 458
Hin1II CATG 3 cut(s) 56, 315, 383
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HpaII CCGG 1 cut(s) 252
HphI GGTGA 2 cut(s) 69, 196
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 4 cut(s) 233, 393, 413, 566
Hpy188III TCNNGA 2 cut(s) 108, 287
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 5 cut(s) 93, 132, 316, 410, 479
HpyCH4III ACNGT 4 cut(s) 92, 208, 340, 424
HpyCH4V TGCA 2 cut(s) 315, 433
Hsp92II CATG 3 cut(s) 56, 315, 383
HspAI GCGC 1 cut(s) 456
KpnI GGTACC 1 cut(s) 99
Kzo9I GATC 3 cut(s) 289, 413, 472
LmnI GCTCC 1 cut(s) 33
Lsp1109I GCAGC 2 cut(s) 445, 599
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 184, 202
MalI GATC 3 cut(s) 291, 415, 474
MboI GATC 3 cut(s) 289, 413, 472
MboII GAAGA 2 cut(s) 275, 601
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 2 cut(s) 38, 571
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 1 cut(s) 427
MluNI TGGCCA 1 cut(s) 620
MmeI TCCRAC 4 cut(s) 111, 164, 218, 471
Mox20I TGGCCA 1 cut(s) 620
MroXI GAANNNNTTC 1 cut(s) 493
MscI TGGCCA 1 cut(s) 620
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 620
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 3 cut(s) 252, 261, 405
MvaI CCWGG 2 cut(s) 261, 405
MvnI CGCG 1 cut(s) 456
NciI CCSGG 1 cut(s) 252
NdeII GATC 3 cut(s) 289, 413, 472
NlaIII CATG 3 cut(s) 56, 315, 383
NlaIV GGNNCC 3 cut(s) 97, 329, 527
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 315
NspV TTCGAA 1 cut(s) 578
PdmI GAANNNNTTC 1 cut(s) 493
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 2 cut(s) 435, 589
Psp6I CCWGG 2 cut(s) 259, 403
PspGI CCWGG 2 cut(s) 259, 403
PspN4I GGNNCC 3 cut(s) 97, 329, 527
PspPI GGNCC 1 cut(s) 376
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 2 cut(s) 97, 256
RsaNI GTAC 2 cut(s) 96, 255
RseI CAYNNNNRTG 1 cut(s) 17
SatI GCNGC 2 cut(s) 434, 588
Sau3AI GATC 3 cut(s) 289, 413, 472
Sau96I GGNCC 1 cut(s) 376
ScrFI CCNGG 3 cut(s) 252, 261, 405
SduI GDGCHC 2 cut(s) 38, 571
SetI ASST 9 cut(s) 62, 85, 146, 265, 277, 320, 527, 604, 649
SfcI CTRYAG 1 cut(s) 478
SfuI TTCGAA 1 cut(s) 578
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 2 cut(s) 160, 635
SmoI CTYRAG 2 cut(s) 160, 635
Sse9I AATT 1 cut(s) 427
SsiI CCGC 1 cut(s) 165
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 3 cut(s) 250, 259, 403
TaaI ACNGT 4 cut(s) 92, 208, 340, 424
TaqI TCGA 3 cut(s) 17, 246, 578
TasI AATT 1 cut(s) 427
TscAI CASTG 2 cut(s) 345, 576
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 2 cut(s) 433, 587
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 217
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 2 cut(s) 345, 576
Van91I CCANNNNNTGG 1 cut(s) 53
XagI CCTNNNNNAGG 1 cut(s) 322
XapI RAATTY 1 cut(s) 427
XceI RCATGY 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 493
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.