AT2G43250

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
17977228 .. 17979736
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43250.1

Sequence Viewer

Length: 1878 bp
ATGGTGGCATTTTTTTTTGCGAATAGTCTTCAAAATATATGGCCCTTTTCGATTTTTCAAAACAGTGACTTGAAGGAATCAAAGGAGCTTGTTCATAGACTTTCGTTACCAGAGAGTACAAAGAACTTTGTGTTTGCTATTAGAGTTCCTGAGCATGATTCAACTATTTACATACTTGCTGCTCAGAATTTATCAGAGAGATCTGCTAGTGATGCTGAGTGTCTTATACGAGAAATTCGTCCTGGTGCGGTAGTTGCTCAAGTGGACAAATCAGCTTTTGGGGAAGCTCAAGTTGAAGAGAGTGTATTAGGAAATGGGATTAGTGATTCAATCCCTACATCAGCTTTTAAAGTTCTTATACAGTGTTTTGTAGACAAGGTTAACAAAGAAAAGTATGAAAGTATTGCAGGGATTGTGGTTTTAAGGGAGATTTTCGGGACAAGTTTTAATGGTCATTTATTGGCTGCCAAAAGGGTGGCTGGGGAGGTTGGTTCGTCGTTTATGGTTCTGGAATCTCCTTTTGTTGATATTGCTGCCGTGGAAGATGCAGGAGGCAAGATGCAAAGTCTAGCTAATAGTCTCGTACCACAACTTAATGGCTCTGCTATATTTTCAAGCTCGCGAAGGTTTCTGATAACTAATGATGTCCAGGCACGGATGCTGAAGTTGATATCTTTGCAGATGAATCAGGTCAATAAAAAACTTAGCCCATCAAGCAGTGTTGCAAGTGGAATTTCCAGTGAGATACAGTCCTGTAGTCATGAAGTTCCTCCATTTGCTCAAACCATTTATCCCTTGCTTGTTGACCTTCATGATATATTCAGTGATCTCCCATCTATTGGGAAAGCTCTAGCCAATGCCAGAAGAATGTTGTCTGATGTTAATAGAGGGGAGTCTATGGATACAGAGGTTATTTCTGAAGTTTACCTTTTCCAGATTGCAGTTGAAGGTCTAAGAATTGCTTTGAACAATGCTGGTCGCCTACCAATCAAGAACATGGGAAGTTCAAGCCGAACCGAAGTTCAGTTTTCACAGCTCTCTTCTGAAGACAAATCTTACGCACTTATGGCAGATCTTCTTCGTAACCAGGCTAAAAAGTTCAAGAACATTGTAGCAATAGTAGATGCATGTAGCCTCGCAGGTCTTAGGAAGCACTGGAAAACTTGTGTTCCTCAAGAAGTCAAAGATATGTCTGAGTATATGCTACAAGATTTTGATAACGACGAGAAGACTAATGATTCAAAGTTGAAACGACTGTTATCTGATAAACCGGTGGTAGCAGTTGGTGCTGGTGCAACTGCTATCTGGGGGGCTTCTTCACTATCCAAGGCCATTTCTGCTTCTCCTTTCTTCAAGATTGTAACTTTCAAAGTCCCGGGATCATTGAACCTCTTTTTGACACATACCCATAAGGCAGTGACATTTGCATTTACCAAAGTGGCGGTTCCGTCTAAAGCAATGGCCCCCGGTTTTGCTAGTTCTGGAGCCAAATCAACATCTTTGGTAAAAGCATCTTTATCCGCCGAGAAAATCAGAGCAGTAACACATAGCATTATAGCTTCTGTAGAAAAGACAAGTTTATCTGCCATGAGAACTGCATTCTATGAGATCATGAGGAAAAGACGAGCAAAACCTATCGGTACCTTACCATTGGTGACATTTGGAGCCAGCCTTGCAACTTGTGCGGGATTGTTCGCCTATGGAGATGGGATCGAATGTGCAGCTATGTCTCTTCCTTCAGCTCCTTCGATTGCAAACTTGGGTAGAGGGATTCAAAACTTACATGAGGCGTCTCTGGAAGTGAGAATGAGAGAAGGCAACAGGATACAGAACGCCATCGAGTCCCTTAGACAAAGACTGAAGAAAGTAAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

625

Amino Acids

67.86

Weight (kDa)

9.2

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1130
Acc65I GGTACC 1 cut(s) 1640
AccB1I GGYRCC 1 cut(s) 1640
AccB7I CCANNNNNTGG 1 cut(s) 839
AccI GTMKAC 1 cut(s) 372
AccII CGCG 1 cut(s) 622
AciI CCGC 4 cut(s) 248, 1442, 1521, 1685
AclWI GGATC 2 cut(s) 1387, 1718
AcsI RAATTY 3 cut(s) 187, 234, 732
AcuI CTGAAG 4 cut(s) 683, 939, 1065, 1722
AcyI GRCGYC 1 cut(s) 1790
AfaI GTAC 3 cut(s) 118, 585, 1642
AfiI CCNNNNNNNGG 1 cut(s) 839
AgeI ACCGGT 1 cut(s) 1270
AjnI CCWGG 3 cut(s) 241, 648, 1086
Alw26I GTCTC 3 cut(s) 584, 1734, 1797
AlwI GGATC 2 cut(s) 1387, 1718
Ama87I CYCGRG 1 cut(s) 1375
AoxI GGCC 3 cut(s) 41, 1329, 1461
ApeKI GCWGC 4 cut(s) 179, 464, 533, 1721
ApoI RAATTY 3 cut(s) 187, 234, 732
AsiGI ACCGGT 1 cut(s) 1270
Asp718I GGTACC 1 cut(s) 1640
AspS9I GGNCC 2 cut(s) 42, 1462
AsuC2I CCSGG 3 cut(s) 1376, 1377, 1467
AsuHPI GGTGA 1 cut(s) 1666
AvaI CYCGRG 1 cut(s) 1375
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BanI GGYRCC 1 cut(s) 1640
BbsI GAAGAC 3 cut(s) 20, 1053, 1235
BbvI GCAGC 4 cut(s) 166, 451, 520, 1733
BccI CCATC 4 cut(s) 718, 841, 1700, 1844
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 3 cut(s) 243, 650, 1088
BciVI GTATCC 2 cut(s) 895, 1818
BcnI CCSGG 3 cut(s) 1376, 1377, 1467
BcoDI GTCTC 3 cut(s) 584, 1734, 1797
BfaI CTAG 4 cut(s) 207, 569, 851, 1476
BfmI CTRYAG 2 cut(s) 754, 1563
BfuAI ACCTGC 1 cut(s) 1130
BfuI GTATCC 2 cut(s) 895, 1818
BglII AGATCT 2 cut(s) 200, 1072
BisI GCNGC 4 cut(s) 180, 465, 534, 1722
BlsI GCNGC 4 cut(s) 181, 466, 535, 1723
Bme1390I CCNGG 6 cut(s) 243, 650, 1088, 1376, 1377, 1467
BmeT110I CYCGRG 1 cut(s) 1375
BmgT120I GGNCC 2 cut(s) 42, 1462
BmiI GGNNCC 5 cut(s) 1446, 1464, 1486, 1642, 1666
BmrFI CCNGG 6 cut(s) 243, 650, 1088, 1376, 1377, 1467
BmsI GCATC 6 cut(s) 202, 535, 549, 648, 1114, 1520
BpiI GAAGAC 3 cut(s) 20, 1053, 1235
BpmI CTGGAG 1 cut(s) 1503
Bpu10I CCTNAGC 1 cut(s) 150
BpuEI CTTGAG 3 cut(s) 243, 273, 1158
BpuMI CCSGG 3 cut(s) 1376, 1377, 1467
BsaHI GRCGYC 1 cut(s) 1790
BsaJI CCNNGG 4 cut(s) 537, 1326, 1375, 1465
BsaWI WCCGGW 1 cut(s) 1270
Bsc4I CCNNNNNNNGG 1 cut(s) 839
Bse118I RCCGGY 1 cut(s) 1270
Bse1I ACTGG 2 cut(s) 738, 1160
Bse3DI GCAATG 1 cut(s) 1464
BseBI CCWGG 3 cut(s) 243, 650, 1088
BseDI CCNNGG 4 cut(s) 537, 1326, 1375, 1465
BseGI GGATG 1 cut(s) 663
BseLI CCNNNNNNNGG 1 cut(s) 839
BseMI GCAATG 1 cut(s) 1464
BseMII CTCAG 4 cut(s) 141, 197, 207, 1185
BseNI ACTGG 2 cut(s) 738, 1160
BseXI GCAGC 4 cut(s) 166, 451, 520, 1733
BseYI CCCAGC 1 cut(s) 479
BsgI GTGCAG 1 cut(s) 1740
Bsh1236I CGCG 1 cut(s) 622
BshFI GGCC 3 cut(s) 43, 1331, 1463
BshNI GGYRCC 1 cut(s) 1640
BshTI ACCGGT 1 cut(s) 1270
BsiHKCI CYCGRG 1 cut(s) 1375
BsiSI CCGG 3 cut(s) 1271, 1376, 1467
BslFI GGGAC 3 cut(s) 451, 1358, 1828
BslI CCNNNNNNNGG 1 cut(s) 839
BsmAI GTCTC 3 cut(s) 584, 1734, 1797
BsmBI CGTCTC 1 cut(s) 1797
BsmFI GGGAC 3 cut(s) 451, 1358, 1828
BsmI GAATGC 1 cut(s) 1598
BsnI GGCC 3 cut(s) 43, 1331, 1463
BsoBI CYCGRG 1 cut(s) 1375
Bsp143I GATC 6 cut(s) 200, 826, 1072, 1379, 1608, 1710
Bsp68I TCGCGA 1 cut(s) 622
BspACI CCGC 4 cut(s) 248, 1442, 1521, 1685
BspANI GGCC 3 cut(s) 43, 1331, 1463
BspCNI CTCAG 4 cut(s) 142, 196, 208, 1186
BspFNI CGCG 1 cut(s) 622
BspHI TCATGA 3 cut(s) 760, 811, 1611
BspLI GGNNCC 5 cut(s) 1446, 1464, 1486, 1642, 1666
BspMI ACCTGC 1 cut(s) 1130
BspPI GGATC 2 cut(s) 1387, 1718
BspT107I GGYRCC 1 cut(s) 1640
BsrDI GCAATG 1 cut(s) 1464
BsrFI RCCGGY 1 cut(s) 1270
BsrI ACTGG 2 cut(s) 738, 1160
BssAI RCCGGY 1 cut(s) 1270
BssECI CCNNGG 4 cut(s) 537, 1326, 1375, 1465
BssMI GATC 6 cut(s) 200, 826, 1072, 1379, 1608, 1710
BssNI GRCGYC 1 cut(s) 1790
BssT1I CCWWGG 1 cut(s) 1326
Bst2UI CCWGG 3 cut(s) 243, 650, 1088
Bst4CI ACNGT 4 cut(s) 65, 363, 750, 1257
Bst6I CTCTTC 3 cut(s) 291, 1045, 1737
BstACI GRCGYC 1 cut(s) 1790
BstAPI GCANNNNNTGC 2 cut(s) 1286, 1682
BstC8I GCNNGC 2 cut(s) 620, 1669
BstDEI CTNAG 8 cut(s) 150, 183, 216, 704, 953, 1145, 1194, 1847
BstDSI CCRYGG 1 cut(s) 537
BstF5I GGATG 1 cut(s) 663
BstFNI CGCG 1 cut(s) 622
BstKTI GATC 6 cut(s) 203, 829, 1075, 1382, 1611, 1713
BstMAI GTCTC 3 cut(s) 584, 1734, 1797
BstMBI GATC 6 cut(s) 200, 826, 1072, 1379, 1608, 1710
BstMWI GCNNNNNNNGC 8 cut(s) 212, 254, 714, 1067, 1286, 1337, 1673, 1682
BstNI CCWGG 3 cut(s) 243, 650, 1088
BstNSI RCATGY 1 cut(s) 1131
BstSCI CCNGG 6 cut(s) 241, 648, 1086, 1374, 1375, 1465
BstSFI CTRYAG 2 cut(s) 754, 1563
BstUI CGCG 1 cut(s) 622
BstV1I GCAGC 4 cut(s) 166, 451, 520, 1733
BstV2I GAAGAC 3 cut(s) 20, 1053, 1235
BstX2I RGATCY 2 cut(s) 200, 1072
BstXI CCANNNNNNTGG 1 cut(s) 475
BstYI RGATCY 2 cut(s) 200, 1072
BsuI GTATCC 2 cut(s) 895, 1818
BsuRI GGCC 3 cut(s) 43, 1331, 1463
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 1 cut(s) 663
BtsI GCAGTG 2 cut(s) 724, 1422
BtsIMutI CAGTG 7 cut(s) 70, 368, 724, 745, 829, 1153, 1422
BtuMI TCGCGA 1 cut(s) 622
BveI ACCTGC 1 cut(s) 1130
Cac8I GCNNGC 2 cut(s) 620, 1669
CciI TCATGA 3 cut(s) 760, 811, 1611
Cfr10I RCCGGY 1 cut(s) 1270
Cfr13I GGNCC 2 cut(s) 42, 1462
Cfr9I CCCGGG 1 cut(s) 1375
CseI GACGC 1 cut(s) 1779
Csp6I GTAC 3 cut(s) 117, 584, 1641
CspAI ACCGGT 1 cut(s) 1270
CviAII CATG 8 cut(s) 155, 761, 812, 997, 1128, 1588, 1612, 1784
CviQI GTAC 3 cut(s) 117, 584, 1641
DdeI CTNAG 8 cut(s) 150, 183, 216, 704, 953, 1145, 1194, 1847
DpnI GATC 6 cut(s) 202, 828, 1074, 1381, 1610, 1712
DpnII GATC 6 cut(s) 200, 826, 1072, 1379, 1608, 1710
DraI TTTAAA 1 cut(s) 349
Eam1104I CTCTTC 3 cut(s) 291, 1045, 1737
EarI CTCTTC 3 cut(s) 291, 1045, 1737
EciI GGCGGA 1 cut(s) 1510
Eco130I CCWWGG 1 cut(s) 1326
Eco32I GATATC 1 cut(s) 672
Eco57I CTGAAG 4 cut(s) 683, 939, 1065, 1722
Eco88I CYCGRG 1 cut(s) 1375
EcoRII CCWGG 3 cut(s) 241, 648, 1086
EcoRV GATATC 1 cut(s) 672
EcoT14I CCWWGG 1 cut(s) 1326
EcoT22I ATGCAT 1 cut(s) 1129
ErhI CCWWGG 1 cut(s) 1326
Esp3I CGTCTC 1 cut(s) 1797
FaeI CATG 8 cut(s) 158, 764, 815, 1000, 1131, 1591, 1615, 1787
FalI AAGNNNNNCTT 4 cut(s) 912, 944, 946, 978
FaqI GGGAC 3 cut(s) 451, 1358, 1828
FatI CATG 8 cut(s) 154, 760, 811, 996, 1127, 1587, 1611, 1783
FauI CCCGC 1 cut(s) 1678
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 4 cut(s) 180, 465, 534, 1722
FokI GGATG 1 cut(s) 670
Fsp4HI GCNGC 4 cut(s) 180, 465, 534, 1722
FspBI CTAG 4 cut(s) 207, 569, 851, 1476
GluI GCNGC 4 cut(s) 180, 465, 534, 1722
GsaI CCCAGC 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 1503
HaeIII GGCC 3 cut(s) 43, 1331, 1463
HapII CCGG 3 cut(s) 1271, 1376, 1467
HgaI GACGC 1 cut(s) 1779
Hin1I GRCGYC 1 cut(s) 1790
Hin1II CATG 8 cut(s) 158, 764, 815, 1000, 1131, 1591, 1615, 1787
HincII GTYRAC 2 cut(s) 382, 805
HindII GTYRAC 2 cut(s) 382, 805
HinfI GANTC 9 cut(s) 77, 158, 326, 512, 685, 893, 1238, 1771, 1841
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 3 cut(s) 1271, 1376, 1467
HphI GGTGA 1 cut(s) 1666
Hpy166II GTNNAC 5 cut(s) 265, 373, 382, 805, 925
Hpy188I TCNGA 9 cut(s) 186, 196, 633, 877, 919, 1045, 1195, 1264, 1535
Hpy8I GTNNAC 5 cut(s) 265, 373, 382, 805, 925
Hpy99I CGWCG 2 cut(s) 499, 1226
HpyAV CCTTC 7 cut(s) 67, 618, 818, 941, 1746, 1755, 1808
HpyCH4III ACNGT 4 cut(s) 65, 363, 750, 1257
HpyF10VI GCNNNNNNNGC 8 cut(s) 212, 254, 714, 1067, 1286, 1337, 1673, 1682
HpyF3I CTNAG 8 cut(s) 150, 183, 216, 704, 953, 1145, 1194, 1847
Hsp92I GRCGYC 1 cut(s) 1790
Hsp92II CATG 8 cut(s) 158, 764, 815, 1000, 1131, 1591, 1615, 1787
KpnI GGTACC 1 cut(s) 1644
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 6 cut(s) 200, 826, 1072, 1379, 1608, 1710
LmnI GCTCC 4 cut(s) 85, 1484, 1664, 1747
Lsp1109I GCAGC 4 cut(s) 166, 451, 520, 1733
LweI GCATC 6 cut(s) 202, 535, 549, 648, 1114, 1520
MaeI CTAG 4 cut(s) 207, 569, 851, 1476
MaeIII GTNAC 7 cut(s) 65, 105, 1082, 1360, 1417, 1540, 1654
MalI GATC 6 cut(s) 202, 828, 1074, 1381, 1610, 1712
MboI GATC 6 cut(s) 200, 826, 1072, 1379, 1608, 1710
MflI RGATCY 2 cut(s) 200, 1072
MluCI AATT 4 cut(s) 187, 234, 732, 957
MlyI GAGTC 2 cut(s) 902, 1850
Mph1103I ATGCAT 1 cut(s) 1129
MseI TTAA 7 cut(s) 348, 381, 422, 447, 594, 882, 1876
MspI CCGG 3 cut(s) 1271, 1376, 1467
MspR9I CCNGG 6 cut(s) 243, 650, 1088, 1376, 1377, 1467
Mva1269I GAATGC 1 cut(s) 1598
MvaI CCWGG 3 cut(s) 243, 650, 1088
MvnI CGCG 1 cut(s) 622
MwoI GCNNNNNNNGC 8 cut(s) 212, 254, 714, 1067, 1286, 1337, 1673, 1682
NciI CCSGG 3 cut(s) 1376, 1377, 1467
NdeII GATC 6 cut(s) 200, 826, 1072, 1379, 1608, 1710
NlaIII CATG 8 cut(s) 158, 764, 815, 1000, 1131, 1591, 1615, 1787
NlaIV GGNNCC 5 cut(s) 1446, 1464, 1486, 1642, 1666
NmeAIII GCCGAG 1 cut(s) 1549
NmuCI GTSAC 3 cut(s) 65, 1417, 1654
NruI TCGCGA 1 cut(s) 622
NsiI ATGCAT 1 cut(s) 1129
NspI RCATGY 1 cut(s) 1131
PagI TCATGA 3 cut(s) 760, 811, 1611
PcsI WCGNNNNNNNCGW 1 cut(s) 235
PctI GAATGC 1 cut(s) 1598
PfeI GAWTC 7 cut(s) 77, 158, 326, 512, 685, 1238, 1771
PflMI CCANNNNNTGG 1 cut(s) 839
PinAI ACCGGT 1 cut(s) 1270
PkrI GCNGC 4 cut(s) 181, 466, 535, 1723
PleI GAGTC 2 cut(s) 901, 1849
PpsI GAGTC 2 cut(s) 901, 1849
Psp6I CCWGG 3 cut(s) 241, 648, 1086
PspFI CCCAGC 1 cut(s) 479
PspGI CCWGG 3 cut(s) 241, 648, 1086
PspN4I GGNNCC 5 cut(s) 1446, 1464, 1486, 1642, 1666
PspPI GGNCC 2 cut(s) 42, 1462
PsuI RGATCY 2 cut(s) 200, 1072
RruI TCGCGA 1 cut(s) 622
RsaI GTAC 3 cut(s) 118, 585, 1642
RsaNI GTAC 3 cut(s) 117, 584, 1641
SaqAI TTAA 7 cut(s) 348, 381, 422, 447, 594, 882, 1876
SatI GCNGC 4 cut(s) 180, 465, 534, 1722
Sau3AI GATC 6 cut(s) 200, 826, 1072, 1379, 1608, 1710
Sau96I GGNCC 2 cut(s) 42, 1462
SchI GAGTC 2 cut(s) 902, 1850
ScrFI CCNGG 6 cut(s) 243, 650, 1088, 1376, 1377, 1467
SfaNI GCATC 6 cut(s) 202, 535, 549, 648, 1114, 1520
SfcI CTRYAG 2 cut(s) 754, 1563
SmaI CCCGGG 1 cut(s) 1377
SmlI CTYRAG 3 cut(s) 258, 288, 1173
SmoI CTYRAG 3 cut(s) 258, 288, 1173
Sse9I AATT 4 cut(s) 187, 234, 732, 957
SsiI CCGC 4 cut(s) 248, 1442, 1521, 1685
SspMI CTAG 4 cut(s) 207, 569, 851, 1476
StyD4I CCNGG 6 cut(s) 241, 648, 1086, 1374, 1375, 1465
StyI CCWWGG 1 cut(s) 1326
TaaI ACNGT 4 cut(s) 65, 363, 750, 1257
TaqI TCGA 4 cut(s) 50, 1713, 1748, 1839
TasI AATT 4 cut(s) 187, 234, 732, 957
TatI WGTACW 1 cut(s) 116
TfiI GAWTC 7 cut(s) 77, 158, 326, 512, 685, 1238, 1771
Tru1I TTAA 7 cut(s) 348, 381, 422, 447, 594, 882, 1876
Tru9I TTAA 7 cut(s) 348, 381, 422, 447, 594, 882, 1876
TscAI CASTG 7 cut(s) 70, 368, 724, 745, 829, 1160, 1422
TseFI GTSAC 3 cut(s) 65, 1417, 1654
TseI GCWGC 4 cut(s) 179, 464, 533, 1721
Tsp45I GTSAC 3 cut(s) 65, 1417, 1654
TspDTI ATGAA 5 cut(s) 83, 411, 698, 777, 800
TspGWI ACGGA 2 cut(s) 670, 1437
TspMI CCCGGG 1 cut(s) 1375
TspRI CASTG 7 cut(s) 70, 368, 724, 745, 829, 1160, 1422
Van91I CCANNNNNTGG 1 cut(s) 839
XapI RAATTY 3 cut(s) 187, 234, 732
XceI RCATGY 1 cut(s) 1131
XmaI CCCGGG 1 cut(s) 1375
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 4 cut(s) 207, 569, 851, 1476
Zsp2I ATGCAT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.