FvH4_7g14000

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
12459757 .. 12462699
2943 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14000.t1

Sequence Viewer

Length: 1941 bp
ATGGCACTTGCATTGGTCCGGAACCTGCATAACTTTTGGCCCTTATCGGTACTCAAACCTGATGACCTGAAGTTATCTAATGAATTAGTACGAAAGCTTGGAATACCCAACCACACGAAGCAGTTTGTTTATGCGGTTCGTGAGCCAGAAACGGAGTCTGTAATTTACATATTATCGGCCCAGAGTTTATCCGAGTGGTCAGCCTTGGATGTGGAGTGTTTGATTAGGGAGGTTAAACCTGATGCGGTCATTGCTCAGGTGGATGTTTCCACCATGAGTGAAGTTCAGTCCGGGAAGGGTGTGTCAGGAGATGGTGTTGAAAGCTCAGTTCCCACTTCGTCGTTTCAGGTTCTGAAACGGTGTTTTCTGGAGAAGGTCAATAGGGATAAGTATGAGAGCGTTGCTGGAGAATTGGTTTTACAAGAGATTTTTGGGGTTGGTTTTCATGGACATTTTTTGGCGGCTAGAAGGGTGGCTGAGGAAATTGGGTCATCATTCTTGGTGCTTGAATTTCCGTCCGGAAGAACTTCTGATGACGAGAATACCTCAGGTGAACTTGATGCAGTGTCAAAGTTCCAAGGTTTAGCTAGTAGTTTGGTTCCACAGCAATTGGGTTCAGTTGCTTCATTGAGTTCAAAGAAGTTTCACCTAACCAATGATGTGCAGTCACAGATAGTGAAGTTTTTATGTCCGTACATAGATTTATCAATATCAAAGCTAAGTTCGTCCAGTTCTGTTTCCGAGGCGGGGTCAAAAGACATTCTGCCACAATCTAGTTATGAGGTCCCGCGTTTTGCTCAGTCTTTTTACCCATTTCTTGTTGATCTATATAACATATTTATTGATCTTCCATCAATGGGAAAGGTTTTAGCTCATGCGCAAAAGATGCTTTATGATGTGAACAAGGGTGAAGCTGTAGATACCAAAGACATATGTGAAGTTTATGCCTTCCGGATTGCTGTCGAGGGGCTGAGAATTGCTTTCAACAATGCTGGTCGAATACCCATTAGTAGAATAAGGAATCCCAACTTAAATAAGACTGAGTTTTCGGATCTTCCAGTTGAGGACAAATGTCAAGCTCTCTTCGCACAGGCCCTTCGGAGCCAGACTAAGAAGTTCAATACCATAGTGGCAGTAGTGGATGCTAGTTGCTTATCAGGTCTTCGAAAACACTGGAATACTTCTGTTCCTTTAGAGGTAAAAGAATTGGTTGGACAGCTTATTACTGATTGTCAAGGTGAGGGGGAAATGTCTAATCATACTGACAAGAAGCGGTTAATAAGTGGTAAACCTCTGGTGGCAGTTGGGGCCGGGGCAACAGCGGTTTTAGGAGCTTCTTCACTCTCTAAGGTTGTTCCTGCTTCAACCCTTATGAAGGTTGTGACTTTTAAAGTTCCTGCTTCGACCCTTCTGAAGGTTGTGACTCTCAAAGTTCCTTCTTCACTTCAGCTCTTTGTAAGCCAAACCCATAAGACAGTGGGACTTTCCCTTAGTAAGATTCTTGGCACATCAAAAGTGGCAGTTCCTAGTGTTGCAAGTTCTGGAGTCAAATCAACAACCGTATTGAAAGCGACTGCATCTGCTGAGAAGATCCGGGCAGTTGCCCACAGTGTTATAGCCACTGCTGAGAAGACCAGCTTTTCAGCAATGAGAACAGCATTTTATCAAATAATGAGGAAACGGCGGGTCCGCTCAATTGGTGTCCTACCATGGGCTACATTTGGATGTAGTATTGCAACTTGTGCTGGGTTATTTGCATATGGAGATGGGATTGAATGTGCAGCCGAATCTATTCCTGCTGCTCCATCAATTGCCAGTTTGGGTCGCGGAATTCAGGGTTTACACCTGGCATCTCAGGAAGTGATACAGAGAGATGGCACCAGAGTACAAAGATCTATTGACCAACTAATGTACAGTCTGAAGAAAGTCAGAGTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

647

Amino Acids

69.89

Weight (kDa)

9.06

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 879
Acc36I ACCTGC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 1877
AccBSI CCGCTC 1 cut(s) 1692
AccII CGCG 2 cut(s) 790, 1827
AccIII TCCGGA 3 cut(s) 18, 518, 951
AclWI GGATC 2 cut(s) 1059, 1585
AcsI RAATTY 2 cut(s) 509, 1830
AcuI CTGAAG 4 cut(s) 89, 1430, 1433, 1940
AfaI GTAC 5 cut(s) 51, 90, 695, 1887, 1913
AfiI CCNNNNNNNGG 5 cut(s) 747, 857, 1375, 1414, 1711
AgsI TTSAA 9 cut(s) 320, 509, 636, 985, 1120, 1365, 1567, 1775, 1937
AjnI CCWGG 1 cut(s) 1845
AlwI GGATC 2 cut(s) 1059, 1585
AlwNI CAGNNNCTG 1 cut(s) 352
Aor13HI TCCGGA 3 cut(s) 18, 518, 951
AoxI GGCC 4 cut(s) 38, 177, 1092, 1308
ApeKI GCWGC 2 cut(s) 1781, 1799
ApoI RAATTY 2 cut(s) 509, 1830
ArsI GACNNNNNNTTYG 2 cut(s) 1030, 1062
Asp700I GAANNNNTTC 2 cut(s) 526, 1791
AspLEI GCGC 1 cut(s) 880
AspS9I GGNCC 7 cut(s) 16, 39, 178, 784, 1093, 1308, 1687
AsuC2I CCSGG 3 cut(s) 292, 1312, 1595
AsuHPI GGTGA 4 cut(s) 563, 638, 920, 1250
AsuII TTCGAA 1 cut(s) 1165
AvaII GGWCC 3 cut(s) 16, 784, 1687
AxyI CCTNAGG 1 cut(s) 547
BanI GGYRCC 1 cut(s) 1877
BbsI GAAGAC 2 cut(s) 1154, 1637
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 1786, 1793
BccI CCATC 5 cut(s) 305, 859, 1760, 1813, 1868
BceAI ACGGC 1 cut(s) 1697
BciT130I CCWGG 1 cut(s) 1847
BcnI CCSGG 3 cut(s) 292, 1312, 1595
BfaI CTAG 5 cut(s) 465, 588, 774, 1146, 1527
BfmI CTRYAG 1 cut(s) 915
BfuAI ACCTGC 1 cut(s) 33
BglII AGATCT 1 cut(s) 1892
BisI GCNGC 3 cut(s) 462, 1782, 1800
BlsI GCNGC 3 cut(s) 463, 1783, 1801
Bme1390I CCNGG 4 cut(s) 292, 1312, 1595, 1847
Bme18I GGWCC 3 cut(s) 16, 784, 1687
BmgT120I GGNCC 7 cut(s) 16, 39, 178, 784, 1093, 1308, 1687
BmiI GGNNCC 7 cut(s) 23, 600, 786, 1103, 1309, 1688, 1879
BmrFI CCNGG 4 cut(s) 292, 1312, 1595, 1847
BmsI GCATC 6 cut(s) 232, 550, 876, 1132, 1586, 1859
BoxI GACNNNNGTC 1 cut(s) 1071
BpiI GAAGAC 2 cut(s) 1154, 1637
BplI GAGNNNNNCTC 2 cut(s) 530, 562
BpmI CTGGAG 3 cut(s) 389, 426, 1563
Bpu10I CCTNAGC 2 cut(s) 255, 477
Bpu14I TTCGAA 1 cut(s) 1165
BpuMI CCSGG 3 cut(s) 292, 1312, 1595
BsaJI CCNNGG 5 cut(s) 204, 577, 741, 1311, 1709
BsaWI WCCGGW 3 cut(s) 18, 518, 951
BsaXI ACNNNNNCTCC 4 cut(s) 300, 330, 399, 429
Bsc4I CCNNNNNNNGG 5 cut(s) 747, 857, 1375, 1414, 1711
Bse1I ACTGG 4 cut(s) 729, 1058, 1178, 1815
Bse21I CCTNAGG 1 cut(s) 547
Bse3DI GCAATG 2 cut(s) 249, 1653
BseAI TCCGGA 3 cut(s) 18, 518, 951
BseBI CCWGG 1 cut(s) 1847
BseDI CCNNGG 5 cut(s) 204, 577, 741, 1311, 1709
BseGI GGATG 4 cut(s) 214, 268, 1147, 1730
BseLI CCNNNNNNNGG 5 cut(s) 747, 857, 1375, 1414, 1711
BseMI GCAATG 2 cut(s) 249, 1653
BseNI ACTGG 4 cut(s) 729, 1058, 1178, 1815
BseXI GCAGC 2 cut(s) 1786, 1793
BseYI CCCAGC 1 cut(s) 1745
BsgI GTGCAG 2 cut(s) 683, 1800
Bsh1236I CGCG 2 cut(s) 790, 1827
BshFI GGCC 4 cut(s) 40, 179, 1094, 1310
BshNI GGYRCC 1 cut(s) 1877
BsiSI CCGG 6 cut(s) 19, 291, 519, 952, 1311, 1594
BslFI GGGAC 2 cut(s) 770, 1494
BslI CCNNNNNNNGG 5 cut(s) 747, 857, 1375, 1414, 1711
BsmFI GGGAC 2 cut(s) 770, 1494
BsnI GGCC 4 cut(s) 40, 179, 1094, 1310
Bsp119I TTCGAA 1 cut(s) 1165
Bsp13I TCCGGA 3 cut(s) 18, 518, 951
Bsp1407I TGTACA 1 cut(s) 1911
Bsp143I GATC 5 cut(s) 823, 844, 1051, 1590, 1892
Bsp19I CCATGG 1 cut(s) 1709
BspANI GGCC 4 cut(s) 40, 179, 1094, 1310
BspEI TCCGGA 3 cut(s) 18, 518, 951
BspFNI CGCG 2 cut(s) 790, 1827
BspLI GGNNCC 7 cut(s) 23, 600, 786, 1103, 1309, 1688, 1879
BspMI ACCTGC 1 cut(s) 33
BspPI GGATC 2 cut(s) 1059, 1585
BspT104I TTCGAA 1 cut(s) 1165
BspT107I GGYRCC 1 cut(s) 1877
BsrBI CCGCTC 1 cut(s) 1692
BsrDI GCAATG 2 cut(s) 249, 1653
BsrGI TGTACA 1 cut(s) 1911
BsrI ACTGG 4 cut(s) 729, 1058, 1178, 1815
BssECI CCNNGG 5 cut(s) 204, 577, 741, 1311, 1709
BssMI GATC 5 cut(s) 823, 844, 1051, 1590, 1892
BssT1I CCWWGG 3 cut(s) 204, 577, 1709
Bst2UI CCWGG 1 cut(s) 1847
Bst4CI ACNGT 5 cut(s) 360, 1477, 1561, 1610, 1916
Bst6I CTCTTC 1 cut(s) 1088
BstAPI GCANNNNNTGC 2 cut(s) 886, 1742
BstAUI TGTACA 1 cut(s) 1911
BstBI TTCGAA 1 cut(s) 1165
BstDSI CCRYGG 1 cut(s) 1709
BstENI CCTNNNNNAGG 2 cut(s) 1373, 1412
BstF5I GGATG 4 cut(s) 214, 268, 1147, 1730
BstFNI CGCG 2 cut(s) 790, 1827
BstHHI GCGC 1 cut(s) 880
BstKTI GATC 5 cut(s) 826, 847, 1054, 1593, 1895
BstMBI GATC 5 cut(s) 823, 844, 1051, 1590, 1892
BstMWI GCNNNNNNNGC 5 cut(s) 251, 886, 1085, 1307, 1742
BstNI CCWGG 1 cut(s) 1847
BstPAI GACNNNNGTC 1 cut(s) 1071
BstSCI CCNGG 4 cut(s) 290, 1310, 1593, 1845
BstSFI CTRYAG 1 cut(s) 915
BstUI CGCG 2 cut(s) 790, 1827
BstV1I GCAGC 2 cut(s) 1786, 1793
BstV2I GAAGAC 2 cut(s) 1154, 1637
BstX2I RGATCY 3 cut(s) 1051, 1590, 1892
BstYI RGATCY 3 cut(s) 1051, 1590, 1892
Bsu36I CCTNAGG 1 cut(s) 547
BsuRI GGCC 4 cut(s) 40, 179, 1094, 1310
BtgI CCRYGG 1 cut(s) 1709
BtsCI GGATG 4 cut(s) 214, 268, 1147, 1730
BtsI GCAGTG 2 cut(s) 570, 1620
BtsIMutI CAGTG 5 cut(s) 570, 1171, 1482, 1615, 1620
BveI ACCTGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 352
CfoI GCGC 1 cut(s) 880
Cfr13I GGNCC 7 cut(s) 16, 39, 178, 784, 1093, 1308, 1687
Csp6I GTAC 5 cut(s) 50, 89, 694, 1886, 1912
CspCI CAANNNNNGTGG 2 cut(s) 591, 626
CviAII CATG 4 cut(s) 274, 446, 875, 1710
CviQI GTAC 5 cut(s) 50, 89, 694, 1886, 1912
DpnI GATC 5 cut(s) 825, 846, 1053, 1592, 1894
DpnII GATC 5 cut(s) 823, 844, 1051, 1590, 1892
DraI TTTAAA 1 cut(s) 1390
Eam1104I CTCTTC 1 cut(s) 1088
EarI CTCTTC 1 cut(s) 1088
Eco130I CCWWGG 3 cut(s) 204, 577, 1709
Eco47I GGWCC 3 cut(s) 16, 784, 1687
Eco57I CTGAAG 4 cut(s) 89, 1430, 1433, 1940
Eco81I CCTNAGG 1 cut(s) 547
EcoNI CCTNNNNNAGG 2 cut(s) 1373, 1412
EcoO109I RGGNCCY 2 cut(s) 784, 1093
EcoRI GAATTC 1 cut(s) 1830
EcoRII CCWGG 1 cut(s) 1845
EcoT14I CCWWGG 3 cut(s) 204, 577, 1709
ErhI CCWWGG 3 cut(s) 204, 577, 1709
FaeI CATG 4 cut(s) 277, 449, 878, 1713
FalI AAGNNNNNCTT 2 cut(s) 1622, 1654
FaqI GGGAC 2 cut(s) 770, 1494
FatI CATG 4 cut(s) 273, 445, 874, 1709
FauI CCCGC 3 cut(s) 739, 795, 1677
FauNDI CATATG 2 cut(s) 932, 1759
Fnu4HI GCNGC 3 cut(s) 462, 1782, 1800
FokI GGATG 4 cut(s) 221, 275, 1154, 1737
Fsp4HI GCNGC 3 cut(s) 462, 1782, 1800
FspBI CTAG 5 cut(s) 465, 588, 774, 1146, 1527
FspI TGCGCA 1 cut(s) 879
GlaI GCGC 1 cut(s) 879
GluI GCNGC 3 cut(s) 462, 1782, 1800
GsaI CCCAGC 1 cut(s) 1749
GsuI CTGGAG 3 cut(s) 389, 426, 1563
HaeIII GGCC 4 cut(s) 40, 179, 1094, 1310
HapII CCGG 6 cut(s) 19, 291, 519, 952, 1311, 1594
HhaI GCGC 1 cut(s) 880
Hin1II CATG 4 cut(s) 277, 449, 878, 1713
Hin6I GCGC 1 cut(s) 878
HinP1I GCGC 1 cut(s) 878
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 6 cut(s) 155, 1021, 1423, 1498, 1545, 1787
HpaII CCGG 6 cut(s) 19, 291, 519, 952, 1311, 1594
HphI GGTGA 4 cut(s) 563, 638, 920, 1250
Hpy166II GTNNAC 4 cut(s) 554, 901, 1289, 1841
Hpy188I TCNGA 9 cut(s) 193, 354, 532, 742, 1051, 1101, 1413, 1920, 1931
Hpy188III TCNNGA 8 cut(s) 19, 140, 306, 368, 519, 952, 1542, 1856
Hpy8I GTNNAC 4 cut(s) 554, 901, 1289, 1841
Hpy99I CGWCG 1 cut(s) 343
HpyAV CCTTC 9 cut(s) 289, 367, 462, 958, 1106, 1369, 1408, 1418, 1446
HpyCH4III ACNGT 5 cut(s) 360, 1477, 1561, 1610, 1916
HpyCH4V TGCA 9 cut(s) 11, 28, 563, 664, 1535, 1577, 1736, 1757, 1781
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 886, 1085, 1307, 1742
Hsp92II CATG 4 cut(s) 277, 449, 878, 1713
HspAI GCGC 1 cut(s) 878
Kpn2I TCCGGA 3 cut(s) 18, 518, 951
Kzo9I GATC 5 cut(s) 823, 844, 1051, 1590, 1892
LmnI GCTCC 3 cut(s) 1101, 1331, 1807
Lsp1109I GCAGC 2 cut(s) 1786, 1793
LweI GCATC 6 cut(s) 232, 550, 876, 1132, 1586, 1859
MaeI CTAG 5 cut(s) 465, 588, 774, 1146, 1527
MaeIII GTNAC 3 cut(s) 666, 1381, 1420
MalI GATC 5 cut(s) 825, 846, 1053, 1592, 1894
MbiI CCGCTC 1 cut(s) 1692
MboI GATC 5 cut(s) 823, 844, 1051, 1590, 1892
MfeI CAATTG 3 cut(s) 608, 1695, 1809
MflI RGATCY 3 cut(s) 1051, 1590, 1892
MlyI GAGTC 3 cut(s) 164, 1417, 1554
MmeI TCCRAC 1 cut(s) 1192
MroI TCCGGA 3 cut(s) 18, 518, 951
MroXI GAANNNNTTC 2 cut(s) 526, 1791
MseI TTAA 4 cut(s) 234, 1031, 1277, 1389
MslI CAYNNNNRTG 1 cut(s) 1723
MspA1I CMGCKG 1 cut(s) 1322
MspI CCGG 6 cut(s) 19, 291, 519, 952, 1311, 1594
MspR9I CCNGG 4 cut(s) 292, 1312, 1595, 1847
MunI CAATTG 3 cut(s) 608, 1695, 1809
MvaI CCWGG 1 cut(s) 1847
MvnI CGCG 2 cut(s) 790, 1827
MwoI GCNNNNNNNGC 5 cut(s) 251, 886, 1085, 1307, 1742
NciI CCSGG 3 cut(s) 292, 1312, 1595
NcoI CCATGG 1 cut(s) 1709
NdeI CATATG 2 cut(s) 932, 1759
NdeII GATC 5 cut(s) 823, 844, 1051, 1590, 1892
NlaIII CATG 4 cut(s) 277, 449, 878, 1713
NlaIV GGNNCC 7 cut(s) 23, 600, 786, 1103, 1309, 1688, 1879
NmuCI GTSAC 3 cut(s) 666, 1381, 1420
NsbI TGCGCA 1 cut(s) 879
NspV TTCGAA 1 cut(s) 1165
PdmI GAANNNNTTC 2 cut(s) 526, 1791
PfeI GAWTC 3 cut(s) 1021, 1498, 1787
PfoI TCCNGGA 1 cut(s) 290
PkrI GCNGC 3 cut(s) 463, 1783, 1801
PleI GAGTC 3 cut(s) 163, 1417, 1553
PpsI GAGTC 3 cut(s) 163, 1417, 1553
PpuMI RGGWCCY 1 cut(s) 784
PshAI GACNNNNGTC 1 cut(s) 1071
Psp5II RGGWCCY 1 cut(s) 784
Psp6I CCWGG 1 cut(s) 1845
PspFI CCCAGC 1 cut(s) 1745
PspGI CCWGG 1 cut(s) 1845
PspN4I GGNNCC 7 cut(s) 23, 600, 786, 1103, 1309, 1688, 1879
PspPI GGNCC 7 cut(s) 16, 39, 178, 784, 1093, 1308, 1687
PspPPI RGGWCCY 1 cut(s) 784
PstNI CAGNNNCTG 1 cut(s) 352
PsuI RGATCY 3 cut(s) 1051, 1590, 1892
RsaI GTAC 5 cut(s) 51, 90, 695, 1887, 1913
RsaNI GTAC 5 cut(s) 50, 89, 694, 1886, 1912
RseI CAYNNNNRTG 1 cut(s) 1723
SaqAI TTAA 4 cut(s) 234, 1031, 1277, 1389
SatI GCNGC 3 cut(s) 462, 1782, 1800
Sau3AI GATC 5 cut(s) 823, 844, 1051, 1590, 1892
Sau96I GGNCC 7 cut(s) 16, 39, 178, 784, 1093, 1308, 1687
SchI GAGTC 3 cut(s) 164, 1417, 1554
ScrFI CCNGG 4 cut(s) 292, 1312, 1595, 1847
SfaNI GCATC 6 cut(s) 232, 550, 876, 1132, 1586, 1859
SfcI CTRYAG 1 cut(s) 915
SfuI TTCGAA 1 cut(s) 1165
SinI GGWCC 3 cut(s) 16, 784, 1687
SmiMI CAYNNNNRTG 1 cut(s) 1723
SspMI CTAG 5 cut(s) 465, 588, 774, 1146, 1527
StyD4I CCNGG 4 cut(s) 290, 1310, 1593, 1845
StyI CCWWGG 3 cut(s) 204, 577, 1709
TaaI ACNGT 5 cut(s) 360, 1477, 1561, 1610, 1916
TaqI TCGA 4 cut(s) 963, 997, 1165, 1403
TatI WGTACW 2 cut(s) 1885, 1911
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 3 cut(s) 1021, 1498, 1787
Tru1I TTAA 4 cut(s) 234, 1031, 1277, 1389
Tru9I TTAA 4 cut(s) 234, 1031, 1277, 1389
TscAI CASTG 5 cut(s) 570, 1178, 1482, 1615, 1627
TseFI GTSAC 3 cut(s) 666, 1381, 1420
TseI GCWGC 2 cut(s) 1781, 1799
Tsp45I GTSAC 3 cut(s) 666, 1381, 1420
TspDTI ATGAA 4 cut(s) 96, 434, 615, 1388
TspGWI ACGGA 3 cut(s) 167, 504, 681
TspRI CASTG 5 cut(s) 570, 1178, 1482, 1615, 1627
VpaK11BI GGWCC 3 cut(s) 16, 784, 1687
XagI CCTNNNNNAGG 2 cut(s) 1373, 1412
XapI RAATTY 2 cut(s) 509, 1830
XmnI GAANNNNTTC 2 cut(s) 526, 1791
XspI CTAG 5 cut(s) 465, 588, 774, 1146, 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.