Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008720

Physical Location & Seq

Genomic Coordinates Forward (+)

16166096 .. 16166365

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1056500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAGGAAACAGCATATCCGGAAAATTGGTGTCCTACCGTGGGCTACCTTTGGGTGCAGTATTGCAACTTGTGCCGGATTGGTTGCGTACGGAGATGGGATTGAATGTGCTGCTGAATCTCTACCTGCAGCTCCATCAACTGCCAGTTTGGGTTGCGGGATTCAAAGTTTACACCTCGCATCTCAGGAAATAGCACGGAGAGATAGCATGAAATTACTAAAATCTATTGAGTCCCTCATGTACAGATTGAAGAAAGTCAGAACTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

9.61

Weight (kDa)

9.5

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43250
fragaria_vesca	FvH4_7g14000
malus_domestica	MD01G1056400.v1.1 MD01G1056500.v1.1 MD07G1139400.v1.1
prunus_persica	Prupe.2G167200_v2.0.a1
pyrus_communis	pycom01g08200 pycom01g08280 pycom01g08450 pycom07g13680 pycom07g13720
rosa_chinensis	RchiOBHm_Chr1g0354651
rosa_laevigata	RLG00000028191
rosa_multiflora	Rmu_co8354095.1_g000001 Rmu_sc0006632.1_g000012 Rmu_sc0013673.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300870
rosa_rugosa	Rorug01G0243700
rosa_samantha	Rh1AG254900 Rh1BG225500 Rh1CG238000 Rh1DG253500
rosa_wichuraiana	Rw1G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	89, 242
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	104, 164, 250
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Aor13HI	TCCGGA	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	110, 128
BbvI	GCAGC	2 cut(s)	97, 140
BccI	CCATC	2 cut(s)	89, 142
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	2 cut(s)	111, 129
BlsI	GCNGC	2 cut(s)	112, 130
BmsI	GCATC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	38
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	144
BseAI	TCCGGA	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	97, 140
BsgI	GTGCAG	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	19, 75
BsiWI	CGTACG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	217
Bsp13I	TCCGGA	1 cut(s)	18
Bsp1407I	TGTACA	1 cut(s)	240
BspACI	CCGC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	196
BspEI	TCCGGA	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	183, 264
BstDSI	CCRYGG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	97, 140
BtgI	CCRYGG	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	88, 241
CviAII	CATG	2 cut(s)	208, 238
CviJI	RGCY	2 cut(s)	44, 131
CviKI_1	RGCY	2 cut(s)	44, 131
CviQI	GTAC	2 cut(s)	88, 241
DdeI	CTNAG	2 cut(s)	183, 264
FaeI	CATG	2 cut(s)	211, 241
FaiI	YATR	3 cut(s)	15, 209, 239
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	2 cut(s)	207, 237
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	2 cut(s)	111, 129
Fsp4HI	GCNGC	2 cut(s)	111, 129
GluI	GCNGC	2 cut(s)	111, 129
HapII	CCGG	2 cut(s)	19, 75
Hin1II	CATG	2 cut(s)	211, 241
HinfI	GANTC	3 cut(s)	116, 160, 230
HpaII	CCGG	2 cut(s)	19, 75
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	2 cut(s)	19, 185
Hpy8I	GTNNAC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	57, 65, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	2 cut(s)	183, 264
Hsp92II	CATG	2 cut(s)	211, 241
Kpn2I	TCCGGA	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	32, 88, 138, 157, 170
Lsp1109I	GCAGC	2 cut(s)	97, 140
LweI	GCATC	1 cut(s)	188
MboII	GAAGA	1 cut(s)	262
MluCI	AATT	2 cut(s)	24, 212
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	2 cut(s)	185, 245
MroI	TCCGGA	1 cut(s)	18
MspI	CCGG	2 cut(s)	19, 75
MwoI	GCNNNNNNNGC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	211, 241
PfeI	GAWTC	2 cut(s)	116, 160
Pfl23II	CGTACG	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	112, 130
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PspLI	CGTACG	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	89, 242
RsaNI	GTAC	2 cut(s)	88, 241
SatI	GCNGC	2 cut(s)	111, 129
SchI	GAGTC	1 cut(s)	239
SetI	ASST	4 cut(s)	50, 127, 133, 177
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	24, 212
SsiI	CCGC	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	39
TasI	AATT	2 cut(s)	24, 212
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	116, 160
TseI	GCWGC	2 cut(s)	110, 128
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	2 cut(s)	105, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.