Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008720

Physical Location & Seq

Genomic Coordinates Forward (+)

16164453 .. 16165805

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1056400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGATCGTTGAATTCCCTCAACCGGGTAGTATCGAATCGTATCGAATTCTGCGTTTTGGAACTGAGAATTTGGAGTTGTTTTCTATGTCGTTGGTGCGCAAACTCCGAATACCTGAACGCACGAAACAATTTGTTTACGCAGTTCGTGAGCCTGAAACTCAGTCTGTAATTTACATACTTTCTGCTCAAAGTTTATCAGAGTGGTCAGCAACGGATGCTGATTGTCTAATTAGGGAGATTAGACCTGATGCTGTCATTGCCCAGGTGGGTCATTCAACCCTGACTGAAATTCAATCCGAAGAAAGTGTATTATGTGATGGTTTTGATAAATCATTTCCCACTTCAACGTTACGAGTTCTCAAACGATGTTTTTTAGAGAAGGTTAACAAGGAGAGGTATGAAGATATTGCAGGAAACTTGGTTTTACAAGAGATTTTTGGGGTTGGTTTTCATGGACAATTTTTGGCAGCCAAGAGGGTGGCTCAGGAGGTTGGATCATCATTCTTGGTGCTTGAATTGCCATTCGTAAAAAGTTCTGGTGCGGAGAATACCCCTGGTGAACTTGAAGCAGTGAGCAAGTTCCAGGGTTTAGTTAGTGGCTTGGTTCCACAGAAAGTGGGTTTAGTTGCTGCGTCAAGTTCGATGAGGTTATACATAACCAATGATTTACAATCACAGATGATCCAATTACGAGGCCCCACAGCTCTAGCTAATGCTCAAAAGATGCTCTACGATGTGAACAGAGGTGAAGCTGTAGATACCAATGTTATATCTGAAGTCTATGCCCTTCGGATTGCAGTCGAGGGGCTGAGAATTTCTCTCAACAATGCTGGTCGCCTTCCCATTAATAAAATAAGGGAGCCGAGCTTAAATCAGGCTGAGCTTTCTGATCTTCCAGTTGAGGACAAGTCACATGCTCTGCTGGTAGAGGCCCTTCGTGGCCAGACTAAGAAGTTCAAGACCATAGTGGCAGTAGTGGATGCTAGTGGCTTAGCAAGTCTTAGAAAACACTGGAAAACTCATGTCCCTTTAGAGGTCAAGGAAATGGTCGGAAAGCTTGTTACTGATTGTGAGGGTGAGGGGGAAATGTCAAATGATACTGACAGGAAAAACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

41.18

Weight (kDa)

5.74

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43250
fragaria_vesca	FvH4_7g14000
malus_domestica	MD01G1056400.v1.1 MD01G1056500.v1.1 MD07G1139400.v1.1
prunus_persica	Prupe.2G167200_v2.0.a1
pyrus_communis	pycom01g08200 pycom01g08280 pycom01g08450 pycom07g13680 pycom07g13720
rosa_chinensis	RchiOBHm_Chr1g0354651
rosa_laevigata	RLG00000028191
rosa_multiflora	Rmu_co8354095.1_g000001 Rmu_sc0006632.1_g000012 Rmu_sc0013673.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300870
rosa_rugosa	Rorug01G0243700
rosa_samantha	Rh1AG254900 Rh1BG225500 Rh1CG238000 Rh1DG253500
rosa_wichuraiana	Rw1G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	98
AciI	CCGC	1 cut(s)	542
AclI	AACGTT	1 cut(s)	347
AclWI	GGATC	2 cut(s)	502, 676
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	5 cut(s)	11, 45, 67, 288, 813
AcuI	CTGAAG	1 cut(s)	795
AfiI	CCNNNNNNNGG	3 cut(s)	22, 23, 1033
AgsI	TTSAA	7 cut(s)	11, 276, 293, 345, 515, 566, 958
AjnI	CCWGG	3 cut(s)	261, 553, 582
AluBI	AGCT	6 cut(s)	704, 710, 752, 867, 883, 1057
AluI	AGCT	6 cut(s)	704, 710, 752, 867, 883, 1057
AlwI	GGATC	2 cut(s)	502, 676
AoxI	GGCC	3 cut(s)	694, 930, 940
ApeKI	GCWGC	2 cut(s)	467, 629
ApoI	RAATTY	5 cut(s)	11, 45, 67, 288, 813
AseI	ATTAAT	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	695, 931
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	3 cut(s)	569, 758, 1088
BaeI	ACNNNNGTAYC	2 cut(s)	750, 783
BalI	TGGCCA	1 cut(s)	942
BarI	GAAGNNNNNNTAC	2 cut(s)	918, 950
BbvI	GCAGC	2 cut(s)	479, 616
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	3 cut(s)	263, 555, 584
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	2 cut(s)	707, 984
BfmI	CTRYAG	1 cut(s)	753
BisI	GCNGC	2 cut(s)	468, 630
BlpI	GCTNAGC	2 cut(s)	879, 991
BlsI	GCNGC	2 cut(s)	469, 631
Bme1390I	CCNGG	4 cut(s)	24, 263, 555, 584
BmgT120I	GGNCC	2 cut(s)	695, 931
BmiI	GGNNCC	3 cut(s)	606, 697, 861
BmrFI	CCNGG	4 cut(s)	24, 263, 555, 584
BmsI	GCATC	4 cut(s)	205, 238, 714, 970
BplI	GAGNNNNNCTC	4 cut(s)	466, 498, 802, 834
Bpu10I	CCTNAGC	1 cut(s)	483
Bpu1102I	GCTNAGC	2 cut(s)	879, 991
BpuMI	CCSGG	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	261, 553, 583
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 23, 1033
Bse1I	ACTGG	2 cut(s)	896, 1016
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	3 cut(s)	263, 555, 584
BseDI	CCNNGG	3 cut(s)	261, 553, 583
BseGI	GGATG	2 cut(s)	220, 985
BseLI	CCNNNNNNNGG	3 cut(s)	22, 23, 1033
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	5 cut(s)	54, 173, 497, 800, 870
BseNI	ACTGG	2 cut(s)	896, 1016
BseXI	GCAGC	2 cut(s)	479, 616
BshFI	GGCC	3 cut(s)	696, 932, 942
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	1010
BslI	CCNNNNNNNGG	3 cut(s)	22, 23, 1033
BsmFI	GGGAC	1 cut(s)	1010
BsnI	GGCC	3 cut(s)	696, 932, 942
Bsp143I	GATC	4 cut(s)	3, 494, 681, 889
Bsp1720I	GCTNAGC	2 cut(s)	879, 991
BspACI	CCGC	1 cut(s)	542
BspANI	GGCC	3 cut(s)	696, 932, 942
BspCNI	CTCAG	5 cut(s)	55, 172, 496, 801, 871
BspLI	GGNNCC	3 cut(s)	606, 697, 861
BspPI	GGATC	2 cut(s)	502, 676
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	896, 1016
BssECI	CCNNGG	3 cut(s)	261, 553, 583
BssMI	GATC	4 cut(s)	3, 494, 681, 889
Bst2UI	CCWGG	3 cut(s)	263, 555, 584
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstDEI	CTNAG	8 cut(s)	63, 159, 483, 809, 879, 948, 991, 1001
BstF5I	GGATG	2 cut(s)	220, 985
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	4 cut(s)	6, 497, 684, 892
BstMBI	GATC	4 cut(s)	3, 494, 681, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 257, 517
BstNI	CCWGG	3 cut(s)	263, 555, 584
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	4 cut(s)	22, 261, 553, 582
BstSFI	CTRYAG	1 cut(s)	753
BstV1I	GCAGC	2 cut(s)	479, 616
BstXI	CCANNNNNNTGG	1 cut(s)	478
BsuRI	GGCC	3 cut(s)	696, 932, 942
BtsCI	GGATG	2 cut(s)	220, 985
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	576, 1009
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	695, 931
CseI	GACGC	1 cut(s)	621
CviAII	CATG	3 cut(s)	452, 914, 1022
DdeI	CTNAG	8 cut(s)	63, 159, 483, 809, 879, 948, 991, 1001
DpnI	GATC	4 cut(s)	5, 496, 683, 891
DpnII	GATC	4 cut(s)	3, 494, 681, 889
EaeI	YGGCCR	1 cut(s)	940
Eco57I	CTGAAG	1 cut(s)	795
EcoO109I	RGGNCCY	2 cut(s)	695, 931
EcoRI	GAATTC	2 cut(s)	11, 45
EcoRII	CCWGG	3 cut(s)	261, 553, 582
FaeI	CATG	3 cut(s)	455, 917, 1025
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	3 cut(s)	451, 913, 1021
Fnu4HI	GCNGC	2 cut(s)	468, 630
FokI	GGATG	2 cut(s)	227, 992
Fsp4HI	GCNGC	2 cut(s)	468, 630
FspBI	CTAG	2 cut(s)	707, 984
FspI	TGCGCA	1 cut(s)	98
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	468, 630
HaeIII	GGCC	3 cut(s)	696, 932, 942
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	621
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	455, 917, 1025
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	1055
HinfI	GANTC	1 cut(s)	35
HpaI	GTTAAC	1 cut(s)	385
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	3 cut(s)	569, 758, 1088
Hpy166II	GTNNAC	4 cut(s)	136, 385, 560, 739
Hpy188I	TCNGA	7 cut(s)	107, 199, 298, 775, 792, 889, 1052
Hpy188III	TCNNGA	3 cut(s)	146, 485, 958
Hpy8I	GTNNAC	4 cut(s)	136, 385, 560, 739
HpyAV	CCTTC	4 cut(s)	373, 797, 848, 944
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	2 cut(s)	410, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 257, 517
HpyF3I	CTNAG	8 cut(s)	63, 159, 483, 809, 879, 948, 991, 1001
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	3 cut(s)	455, 917, 1025
HspAI	GCGC	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	3, 494, 681, 889
LmnI	GCTCC	1 cut(s)	859
Lsp1109I	GCAGC	2 cut(s)	479, 616
LweI	GCATC	4 cut(s)	205, 238, 714, 970
MaeI	CTAG	2 cut(s)	707, 984
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	3 cut(s)	348, 909, 1060
MalI	GATC	4 cut(s)	5, 496, 683, 891
MboI	GATC	4 cut(s)	3, 494, 681, 889
MboII	GAAGA	3 cut(s)	311, 413, 884
MlsI	TGGCCA	1 cut(s)	942
MluNI	TGGCCA	1 cut(s)	942
MmeI	TCCRAC	2 cut(s)	472, 1030
Mox20I	TGGCCA	1 cut(s)	942
MscI	TGGCCA	1 cut(s)	942
MseI	TTAA	3 cut(s)	384, 846, 869
Msp20I	TGGCCA	1 cut(s)	942
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	4 cut(s)	24, 263, 555, 584
MvaI	CCWGG	3 cut(s)	263, 555, 584
MwoI	GCNNNNNNNGC	3 cut(s)	215, 257, 517
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	3, 494, 681, 889
NlaIII	CATG	3 cut(s)	455, 917, 1025
NlaIV	GGNNCC	3 cut(s)	606, 697, 861
NmeAIII	GCCGAG	1 cut(s)	888
NmuCI	GTSAC	1 cut(s)	909
NsbI	TGCGCA	1 cut(s)	98
NspI	RCATGY	1 cut(s)	917
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	469, 631
PshBI	ATTAAT	1 cut(s)	846
Psp1406I	AACGTT	1 cut(s)	347
Psp6I	CCWGG	3 cut(s)	261, 553, 582
PspGI	CCWGG	3 cut(s)	261, 553, 582
PspN4I	GGNNCC	3 cut(s)	606, 697, 861
PspPI	GGNCC	2 cut(s)	695, 931
SaqAI	TTAA	3 cut(s)	384, 846, 869
SatI	GCNGC	2 cut(s)	468, 630
Sau3AI	GATC	4 cut(s)	3, 494, 681, 889
Sau96I	GGNCC	2 cut(s)	695, 931
ScrFI	CCNGG	4 cut(s)	24, 263, 555, 584
SfaNI	GCATC	4 cut(s)	205, 238, 714, 970
SfcI	CTRYAG	1 cut(s)	753
SsiI	CCGC	1 cut(s)	542
SspMI	CTAG	2 cut(s)	707, 984
StyD4I	CCNGG	4 cut(s)	22, 261, 553, 582
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	4 cut(s)	33, 43, 641, 801
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	3 cut(s)	384, 846, 869
Tru9I	TTAA	3 cut(s)	384, 846, 869
TscAI	CASTG	2 cut(s)	576, 1016
TseFI	GTSAC	1 cut(s)	909
TseI	GCWGC	2 cut(s)	467, 629
Tsp45I	GTSAC	1 cut(s)	909
TspDTI	ATGAA	2 cut(s)	414, 440
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	2 cut(s)	576, 1016
VspI	ATTAAT	1 cut(s)	846
XapI	RAATTY	5 cut(s)	11, 45, 67, 288, 813
XceI	RCATGY	1 cut(s)	917
XspI	CTAG	2 cut(s)	707, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.