Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008720

Physical Location & Seq

Genomic Coordinates Forward (+)

9160402 .. 9162138

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGAAAGGCTCTAGCTAATGCTCAAAAGATGCTCTACAATGTGAACAGATGTGAAGCTGTAGATACCAATGTTATATCTGAATTCTATGCCCTTCAGATTGCAATCAAGGGGCTGAGAATTTCTCTGACCAATGCCGGTCACCTTCCCATTAATAAAATGAGGGAGCCGAGCTTAAATCAGGCTAAGCTTTCCGATCTTCCAGTTGAGGACAAGTCACATGCTCTGCTGGTAGAGGCCCTTCGTCGCCAGACTAAGAAGTTCGAGACCATAGTGGCAGTAGTGGATGCTAGTGGCTTAGCAGGTCTTAGAAAACACTGGAACACTCATGTCCCTTTAGAATTAGAGGTCAAGGAAATGGTCGGAAAGCTTGTTACTGATTGTGAGGGTGAGGGGGAAATGTCAAATGATACTGACAGGAAAAGACTGCTAACTGATAAACCTTTGGTGGCAGTAGGGGCAGGGGCAACAGCAGTTTTAGGAGCATCTTCACTCTCCAAAGCTGCGACACTCAAATTTCCTGCTTCAACCTTGATGAAAGTGGTGACTTTCAAAGTTCCAGCTTCACTTAAACTCTTTCTAAGACAAACCCATAAGACGGTGGAATTTGCTCTTAGTAAGACGCTTGGCCCCTCAAAAATGGTAGCTCCAGGTGTCAAATCAACAACTTTACTGAAAACAACTGCTTCTGCTGAGAAGATCCGAGTAGCTGCCCATAGTGTTATAGGTGCTGCAGAGAAGACTAGCTTTTCAGCCATGAGAACAGCATTCTATCAAATAATGAGGAAACGACATATCCGGAAAATTGGTGTCCTACCGTGGGCTACCTTTGGGTGTAGTATTGCAACTTGCGCCGGATTGGTTGCGTACGGAGATGGGATTGAATGTGCTGCTGAATCTCTACCTGCAGCTCCATCATTTGCCAGTTTGGGTCCCGGGATTCAAAGTTTACACCTCGCATCTCAGGAAATATCACTGAGAGATAGCATGAAATTACAAAAATCTATTGAGTCCCTCATGTACAGATTGAAGAAAGTCAGAACTCAGTACAGGTGCAGTTCATGCACAAGCAAAGGTGGAGGCTGTGTAAATGTAGGGATACCGTCCCAAGAAAAGGTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

375

Amino Acids

40.23

Weight (kDa)

9.71

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43250
fragaria_vesca	FvH4_7g14000
malus_domestica	MD01G1056400.v1.1 MD01G1056500.v1.1 MD07G1139400.v1.1
prunus_persica	Prupe.2G167200_v2.0.a1
pyrus_communis	pycom01g08200 pycom01g08280 pycom01g08450 pycom07g13680 pycom07g13720
rosa_chinensis	RchiOBHm_Chr1g0354651
rosa_laevigata	RLG00000028191
rosa_multiflora	Rmu_co8354095.1_g000001 Rmu_sc0006632.1_g000012 Rmu_sc0013673.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300870
rosa_rugosa	Rorug01G0243700
rosa_samantha	Rh1AG254900 Rh1BG225500 Rh1CG238000 Rh1DG253500
rosa_wichuraiana	Rw1G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	293, 913
AccIII	TCCGGA	1 cut(s)	798
AclWI	GGATC	1 cut(s)	694
AcsI	RAATTY	4 cut(s)	83, 120, 515, 605
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	3 cut(s)	869, 1022, 1049
AfiI	CCNNNNNNNGG	3 cut(s)	598, 820, 1114
AgsI	TTSAA	5 cut(s)	528, 553, 884, 944, 1030
AjnI	CCWGG	1 cut(s)	649
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	694
Ama87I	CYCGRG	1 cut(s)	935
Aor13HI	TCCGGA	1 cut(s)	798
AoxI	GGCC	2 cut(s)	237, 628
ApeKI	GCWGC	5 cut(s)	503, 710, 731, 890, 908
ApoI	RAATTY	4 cut(s)	83, 120, 515, 605
AseI	ATTAAT	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	854
AspS9I	GGNCC	3 cut(s)	238, 629, 932
AsuC2I	CCSGG	2 cut(s)	936, 937
AsuHPI	GGTGA	3 cut(s)	134, 401, 556
AvaI	CYCGRG	1 cut(s)	935
AvaII	GGWCC	1 cut(s)	932
BaeI	ACNNNNGTAYC	2 cut(s)	57, 90
BarI	GAAGNNNNNNTAC	2 cut(s)	225, 257
BbsI	GAAGAC	1 cut(s)	746
BbvI	GCAGC	5 cut(s)	490, 697, 718, 877, 920
BccI	CCATC	2 cut(s)	869, 922
BciT130I	CCWGG	1 cut(s)	651
BciVI	GTATCC	1 cut(s)	1092
BcnI	CCSGG	2 cut(s)	936, 937
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	3 cut(s)	14, 291, 744
BfmI	CTRYAG	3 cut(s)	60, 732, 906
BfuAI	ACCTGC	2 cut(s)	293, 913
BfuI	GTATCC	1 cut(s)	1092
BisI	GCNGC	5 cut(s)	504, 711, 732, 891, 909
BlpI	GCTNAGC	2 cut(s)	186, 298
BlsI	GCNGC	5 cut(s)	505, 712, 733, 892, 910
Bme1390I	CCNGG	3 cut(s)	651, 936, 937
Bme18I	GGWCC	1 cut(s)	932
BmeT110I	CYCGRG	1 cut(s)	935
BmgT120I	GGNCC	3 cut(s)	238, 629, 932
BmiI	GGNNCC	4 cut(s)	168, 631, 933, 934
BmrFI	CCNGG	3 cut(s)	651, 936, 937
BmsI	GCATC	4 cut(s)	21, 277, 494, 968
BpiI	GAAGAC	1 cut(s)	746
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpmI	CTGGAG	1 cut(s)	633
Bpu1102I	GCTNAGC	2 cut(s)	186, 298
BpuMI	CCSGG	2 cut(s)	936, 937
BsaBI	GATNNNNATC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	818, 935
BsaWI	WCCGGW	1 cut(s)	798
BsaXI	ACNNNNNCTCC	2 cut(s)	1071, 1101
Bsc4I	CCNNNNNNNGG	3 cut(s)	598, 820, 1114
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	3 cut(s)	203, 323, 924
Bse8I	GATNNNNATC	1 cut(s)	104
BseAI	TCCGGA	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	818, 935
BseGI	GGATG	1 cut(s)	292
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	3 cut(s)	598, 820, 1114
BseMII	CTCAG	5 cut(s)	107, 684, 968, 977, 1058
BseNI	ACTGG	3 cut(s)	203, 323, 924
BseXI	GCAGC	5 cut(s)	490, 697, 718, 877, 920
BsgI	GTGCAG	1 cut(s)	1075
BshFI	GGCC	2 cut(s)	239, 630
BsiHKCI	CYCGRG	1 cut(s)	935
BsiSI	CCGG	4 cut(s)	138, 799, 855, 936
BsiWI	CGTACG	1 cut(s)	867
BslFI	GGGAC	4 cut(s)	317, 918, 997, 1090
BslI	CCNNNNNNNGG	3 cut(s)	598, 820, 1114
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	4 cut(s)	317, 918, 997, 1090
BsmI	GAATGC	1 cut(s)	767
BsnI	GGCC	2 cut(s)	239, 630
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	935
Bsp13I	TCCGGA	1 cut(s)	798
Bsp1407I	TGTACA	1 cut(s)	1020
Bsp143I	GATC	2 cut(s)	196, 699
Bsp1720I	GCTNAGC	2 cut(s)	186, 298
BspANI	GGCC	2 cut(s)	239, 630
BspCNI	CTCAG	5 cut(s)	108, 685, 969, 976, 1057
BspEI	TCCGGA	1 cut(s)	798
BspLI	GGNNCC	4 cut(s)	168, 631, 933, 934
BspMAI	CTGCAG	2 cut(s)	736, 910
BspMI	ACCTGC	2 cut(s)	293, 913
BspPI	GGATC	1 cut(s)	694
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	1020
BsrI	ACTGG	3 cut(s)	203, 323, 924
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	818, 935
BssMI	GATC	2 cut(s)	196, 699
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	3 cut(s)	601, 819, 1104
BstAPI	GCANNNNNTGC	1 cut(s)	1062
BstAUI	TGTACA	1 cut(s)	1020
BstDSI	CCRYGG	1 cut(s)	818
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	854
BstKTI	GATC	2 cut(s)	199, 702
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	2 cut(s)	196, 699
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 851, 1062
BstNI	CCWGG	1 cut(s)	651
BstNSI	RCATGY	1 cut(s)	224
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	3 cut(s)	649, 934, 935
BstSFI	CTRYAG	3 cut(s)	60, 732, 906
BstV1I	GCAGC	5 cut(s)	490, 697, 718, 877, 920
BstV2I	GAAGAC	1 cut(s)	746
BstX2I	RGATCY	1 cut(s)	699
BstYI	RGATCY	1 cut(s)	699
BsuI	GTATCC	1 cut(s)	1092
BsuRI	GGCC	2 cut(s)	239, 630
BtgI	CCRYGG	1 cut(s)	818
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	316, 974
BveI	ACCTGC	2 cut(s)	293, 913
CfoI	GCGC	1 cut(s)	854
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	238, 629, 932
Cfr9I	CCCGGG	1 cut(s)	935
CseI	GACGC	1 cut(s)	631
Csp6I	GTAC	3 cut(s)	868, 1021, 1048
CviAII	CATG	6 cut(s)	221, 329, 757, 988, 1018, 1062
CviQI	GTAC	3 cut(s)	868, 1021, 1048
DpnI	GATC	2 cut(s)	198, 701
DpnII	GATC	2 cut(s)	196, 699
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	932
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	935
Eco91I	GGTNACC	1 cut(s)	140
EcoO109I	RGGNCCY	2 cut(s)	238, 932
EcoO65I	GGTNACC	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	649
FaeI	CATG	6 cut(s)	224, 332, 760, 991, 1021, 1065
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FaqI	GGGAC	4 cut(s)	317, 918, 997, 1090
FatI	CATG	6 cut(s)	220, 328, 756, 987, 1017, 1061
Fnu4HI	GCNGC	5 cut(s)	504, 711, 732, 891, 909
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	5 cut(s)	504, 711, 732, 891, 909
FspBI	CTAG	3 cut(s)	14, 291, 744
GlaI	GCGC	1 cut(s)	853
GluI	GCNGC	5 cut(s)	504, 711, 732, 891, 909
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	2 cut(s)	239, 630
HapII	CCGG	4 cut(s)	138, 799, 855, 936
HgaI	GACGC	1 cut(s)	631
HhaI	GCGC	1 cut(s)	854
Hin1II	CATG	6 cut(s)	224, 332, 760, 991, 1021, 1065
Hin6I	GCGC	1 cut(s)	852
HinP1I	GCGC	1 cut(s)	852
HindIII	AAGCTT	2 cut(s)	188, 368
HinfI	GANTC	3 cut(s)	896, 940, 1010
HpaII	CCGG	4 cut(s)	138, 799, 855, 936
HphI	GGTGA	3 cut(s)	134, 401, 556
Hpy166II	GTNNAC	2 cut(s)	46, 950
Hpy188I	TCNGA	7 cut(s)	82, 99, 129, 196, 365, 704, 1040
Hpy188III	TCNNGA	3 cut(s)	265, 799, 965
Hpy8I	GTNNAC	2 cut(s)	46, 950
Hpy99I	CGWCG	1 cut(s)	249
HpyAV	CCTTC	3 cut(s)	104, 155, 251
HpyCH4III	ACNGT	3 cut(s)	601, 819, 1104
HpyCH4V	TGCA	6 cut(s)	104, 734, 845, 908, 1056, 1065
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 851, 1062
Hsp92II	CATG	6 cut(s)	224, 332, 760, 991, 1021, 1065
HspAI	GCGC	1 cut(s)	852
KflI	GGGWCCC	1 cut(s)	932
Kpn2I	TCCGGA	1 cut(s)	798
Kzo9I	GATC	2 cut(s)	196, 699
LmnI	GCTCC	4 cut(s)	166, 482, 652, 916
Lsp1109I	GCAGC	5 cut(s)	490, 697, 718, 877, 920
LweI	GCATC	4 cut(s)	21, 277, 494, 968
MaeI	CTAG	3 cut(s)	14, 291, 744
MaeIII	GTNAC	4 cut(s)	140, 216, 373, 544
MalI	GATC	2 cut(s)	198, 701
MboI	GATC	2 cut(s)	196, 699
MboII	GAAGA	5 cut(s)	191, 480, 709, 751, 1042
MflI	RGATCY	1 cut(s)	699
MluCI	AATT	7 cut(s)	83, 120, 341, 515, 605, 804, 992
MlyI	GAGTC	1 cut(s)	1019
MmeI	TCCRAC	1 cut(s)	343
MroI	TCCGGA	1 cut(s)	798
MseI	TTAA	3 cut(s)	153, 176, 570
MspI	CCGG	4 cut(s)	138, 799, 855, 936
MspR9I	CCNGG	3 cut(s)	651, 936, 937
Mva1269I	GAATGC	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	651
MwoI	GCNNNNNNNGC	3 cut(s)	458, 851, 1062
NciI	CCSGG	2 cut(s)	936, 937
NdeII	GATC	2 cut(s)	196, 699
NlaIII	CATG	6 cut(s)	224, 332, 760, 991, 1021, 1065
NlaIV	GGNNCC	4 cut(s)	168, 631, 933, 934
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	3 cut(s)	140, 216, 544
NspI	RCATGY	1 cut(s)	224
PctI	GAATGC	1 cut(s)	767
PfeI	GAWTC	2 cut(s)	896, 940
Pfl23II	CGTACG	1 cut(s)	867
PkrI	GCNGC	5 cut(s)	505, 712, 733, 892, 910
PleI	GAGTC	1 cut(s)	1018
PpsI	GAGTC	1 cut(s)	1018
PpuMI	RGGWCCY	1 cut(s)	932
PshBI	ATTAAT	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	932
Psp6I	CCWGG	1 cut(s)	649
PspEI	GGTNACC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	649
PspLI	CGTACG	1 cut(s)	867
PspN4I	GGNNCC	4 cut(s)	168, 631, 933, 934
PspPI	GGNCC	3 cut(s)	238, 629, 932
PspPPI	RGGWCCY	1 cut(s)	932
PstI	CTGCAG	2 cut(s)	736, 910
PsuI	RGATCY	1 cut(s)	699
RsaI	GTAC	3 cut(s)	869, 1022, 1049
RsaNI	GTAC	3 cut(s)	868, 1021, 1048
SaqAI	TTAA	3 cut(s)	153, 176, 570
SatI	GCNGC	5 cut(s)	504, 711, 732, 891, 909
Sau3AI	GATC	2 cut(s)	196, 699
Sau96I	GGNCC	3 cut(s)	238, 629, 932
SchI	GAGTC	1 cut(s)	1019
ScrFI	CCNGG	3 cut(s)	651, 936, 937
SfaNI	GCATC	4 cut(s)	21, 277, 494, 968
SfcI	CTRYAG	3 cut(s)	60, 732, 906
SinI	GGWCC	1 cut(s)	932
SmaI	CCCGGG	1 cut(s)	937
Sse9I	AATT	7 cut(s)	83, 120, 341, 515, 605, 804, 992
SspMI	CTAG	3 cut(s)	14, 291, 744
StyD4I	CCNGG	3 cut(s)	649, 934, 935
TaaI	ACNGT	3 cut(s)	601, 819, 1104
TaqI	TCGA	1 cut(s)	264
TasI	AATT	7 cut(s)	83, 120, 341, 515, 605, 804, 992
TatI	WGTACW	2 cut(s)	1020, 1047
TfiI	GAWTC	2 cut(s)	896, 940
Tru1I	TTAA	3 cut(s)	153, 176, 570
Tru9I	TTAA	3 cut(s)	153, 176, 570
TscAI	CASTG	2 cut(s)	323, 981
TseFI	GTSAC	3 cut(s)	140, 216, 544
TseI	GCWGC	5 cut(s)	503, 710, 731, 890, 908
Tsp45I	GTSAC	3 cut(s)	140, 216, 544
TspDTI	ATGAA	3 cut(s)	551, 1004, 1050
TspGWI	ACGGA	1 cut(s)	885
TspMI	CCCGGG	1 cut(s)	935
TspRI	CASTG	2 cut(s)	323, 981
VpaK11BI	GGWCC	1 cut(s)	932
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	4 cut(s)	83, 120, 515, 605
XceI	RCATGY	1 cut(s)	224
XmaI	CCCGGG	1 cut(s)	935
XspI	CTAG	3 cut(s)	14, 291, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.