Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008720

Physical Location & Seq

Genomic Coordinates Forward (+)

9367595 .. 9368568

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGATGCTGATTGTCTAATTAGGGAGATTAGACCTGATGCTGTCATTGCCCAGGGTGGCTCAGGAGGTTCGATCATCAGCCAGACTAAGAAGTTCAAGACCATAGTGATAGTAGTGGATGCTAGTGGCTTAGCAGGTCTTAGAAAACACTGGAACACTCATGTCCCTTTAAAGGTCAAGGAAATGGTCGAAAAGCTTGTTACTGATTGTGAAGGTGAGGGGGAAATATCAAATGATACTGACAGGAAAAGACTGCTAACAGATAAACCTTTGGTGGCAGTAGGGGCAGGGGCAACAGAAGTTTTAGGAGCATCTTCACTTAAACTCTTTCTAAGCCAAACCCATAAGACGGTGGGATTTGCTCTTAGTAAGACGCTTGGCCCCTCAAAAATGGTAGCTCCATGTGTCAAATCAACAACTTTACTGAAAGCAATTGCTTCTGCAGGTAGAGAAGACTACTCCTCATTTGCCAGTTTTGGTCCCGGGATTCAAAGTTTACACCTCGCATCTCAGGAAATATCACTGAGAGATAGCATGAAATTACAAAAATCTACTGAGTCCCTCATGTACAGATTGAAGAAAGTCAGAACTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.29

Weight (kDa)

9.47

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43250
fragaria_vesca	FvH4_7g14000
malus_domestica	MD01G1056400.v1.1 MD01G1056500.v1.1 MD07G1139400.v1.1
prunus_persica	Prupe.2G167200_v2.0.a1
pyrus_communis	pycom01g08200 pycom01g08280 pycom01g08450 pycom07g13680 pycom07g13720
rosa_chinensis	RchiOBHm_Chr1g0354651
rosa_laevigata	RLG00000028191
rosa_multiflora	Rmu_co8354095.1_g000001 Rmu_sc0006632.1_g000012 Rmu_sc0013673.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300870
rosa_rugosa	Rorug01G0243700
rosa_samantha	Rh1AG254900 Rh1BG225500 Rh1CG238000 Rh1DG253500
rosa_wichuraiana	Rw1G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	125, 434
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	2 cut(s)	172, 349
AgsI	TTSAA	3 cut(s)	97, 491, 577
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	2 cut(s)	196, 398
AluI	AGCT	2 cut(s)	196, 398
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	380, 479
AsuC2I	CCSGG	2 cut(s)	483, 484
AsuHPI	GGTGA	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	459
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	2 cut(s)	483, 484
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	441
BfuAI	ACCTGC	2 cut(s)	125, 434
BlpI	GCTNAGC	1 cut(s)	130
Bme1390I	CCNGG	3 cut(s)	53, 483, 484
Bme18I	GGWCC	1 cut(s)	479
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	380, 479
BmiI	GGNNCC	2 cut(s)	382, 481
BmrFI	CCNGG	3 cut(s)	53, 483, 484
BmsI	GCATC	4 cut(s)	28, 109, 320, 515
BpiI	GAAGAC	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	130
BpuMI	CCSGG	2 cut(s)	483, 484
BsaJI	CCNNGG	3 cut(s)	51, 52, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 349
Bse1I	ACTGG	2 cut(s)	155, 471
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	3 cut(s)	51, 52, 482
BseGI	GGATG	2 cut(s)	10, 124
BseLI	CCNNNNNNNGG	2 cut(s)	172, 349
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	4 cut(s)	75, 515, 524, 546
BseNI	ACTGG	2 cut(s)	155, 471
BseRI	GAGGAG	1 cut(s)	451
BshFI	GGCC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	3 cut(s)	149, 465, 544
BslI	CCNNNNNNNGG	2 cut(s)	172, 349
BsmFI	GGGAC	3 cut(s)	149, 465, 544
BsnI	GGCC	1 cut(s)	381
BsoBI	CYCGRG	1 cut(s)	482
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	1 cut(s)	72
Bsp1720I	GCTNAGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	4 cut(s)	74, 516, 523, 547
BspLI	GGNNCC	2 cut(s)	382, 481
BspMAI	CTGCAG	1 cut(s)	445
BspMI	ACCTGC	2 cut(s)	125, 434
BsrDI	GCAATG	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	155, 471
BssECI	CCNNGG	3 cut(s)	51, 52, 482
BssMI	GATC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	352
BstAUI	TGTACA	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	10, 124
BstKTI	GATC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 284
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	3 cut(s)	51, 481, 482
BstSFI	CTRYAG	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	10, 124
BtsIMutI	CAGTG	2 cut(s)	148, 521
BveI	ACCTGC	2 cut(s)	125, 434
Cfr13I	GGNCC	2 cut(s)	380, 479
Cfr9I	CCCGGG	1 cut(s)	482
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	4 cut(s)	161, 402, 535, 565
CviJI	RGCY	7 cut(s)	60, 81, 129, 196, 336, 381, 398
CviKI_1	RGCY	7 cut(s)	60, 81, 129, 196, 336, 381, 398
CviQI	GTAC	1 cut(s)	568
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
DraI	TTTAAA	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	164, 405, 538, 568
FaiI	YATR	6 cut(s)	104, 162, 345, 403, 536, 566
FaqI	GGGAC	3 cut(s)	149, 465, 544
FatI	CATG	4 cut(s)	160, 401, 534, 564
FokI	GGATG	2 cut(s)	17, 131
FspBI	CTAG	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	483
HgaI	GACGC	1 cut(s)	382
Hin1II	CATG	4 cut(s)	164, 405, 538, 568
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	2 cut(s)	487, 557
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188I	TCNGA	1 cut(s)	587
Hpy188III	TCNNGA	3 cut(s)	63, 97, 512
Hpy8I	GTNNAC	1 cut(s)	497
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 284
Hsp92II	CATG	4 cut(s)	164, 405, 538, 568
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	308, 403
LweI	GCATC	4 cut(s)	28, 109, 320, 515
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	306, 464, 589
MfeI	CAATTG	1 cut(s)	432
MluCI	AATT	3 cut(s)	18, 432, 539
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	6 cut(s)	59, 211, 394, 472, 512, 572
MseI	TTAA	2 cut(s)	170, 321
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	3 cut(s)	53, 483, 484
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	47, 284
NciI	CCSGG	2 cut(s)	483, 484
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	4 cut(s)	164, 405, 538, 568
NlaIV	GGNNCC	2 cut(s)	382, 481
PasI	CCCWGGG	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	487
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	382, 481
PspPI	GGNCC	2 cut(s)	380, 479
PstI	CTGCAG	1 cut(s)	445
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SaqAI	TTAA	2 cut(s)	170, 321
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	2 cut(s)	380, 479
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	3 cut(s)	53, 483, 484
SfaNI	GCATC	4 cut(s)	28, 109, 320, 515
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	479
SmaI	CCCGGG	1 cut(s)	484
Sse9I	AATT	3 cut(s)	18, 432, 539
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	3 cut(s)	51, 481, 482
TaaI	ACNGT	1 cut(s)	352
TaqI	TCGA	2 cut(s)	71, 189
TasI	AATT	3 cut(s)	18, 432, 539
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	2 cut(s)	170, 321
Tru9I	TTAA	2 cut(s)	170, 321
TscAI	CASTG	2 cut(s)	155, 528
TspDTI	ATGAA	1 cut(s)	551
TspMI	CCCGGG	1 cut(s)	482
TspRI	CASTG	2 cut(s)	155, 528
VpaK11BI	GGWCC	1 cut(s)	479
XmaI	CCCGGG	1 cut(s)	482
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.