Rmu_co8354095.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8354095.1
OG0008720
Physical Location & Seq
Forward (+)
1 .. 828
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8354095.1_g000001.1.cds

Sequence Viewer

Length: 782 bp
gtcttcgaaaacattggaatactcctgttcctctagaggtaaaggaattggttggacagctcattactgattgtggtggtgagggggaaatgtctaatcatactgacaagaagcggttaattagtggtaaacctttggtggcagttggggccggggcaacagcggttttaggagtctcttcactctctaaggttgttcctgcttcgacctttatgaaggttgtgactttcaaagttcctacttcgacccttgtgaaggttgtgactctcaaacttccttcttcacttcaattcttcttaagccaagcccataagacagtgggactttcccttagtaagattcttggcacatcgaaagtgttagttcctggtgttgcaagttctggagtcaaatcaacaactgtgttgaaagcaactgcgtctgctgagaagattcgagcagttgcccacagtgttattgccagtgctgagaagaccagcttttcagcaatgagaacagcattttatcaaataatgagaaaacggcaggtccgtccaatcggtgtcctaccatgggctacgtttggatgtagtattgcaacttgtgccgggttatttgcgtatggagatgggattgaatgtgcagctgaatctgctcctgcagctccatcaattgccagtttgggtcgtgggattcaaggtttacatctggcgtctcaggaagtgatgcagacagatggcaccaaagtacaaagatctatcgactcactaatgtacagtttgaagaaagtcagagttcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

27.24

Weight (kDa)

10.02

Isoelectric Point (pI)

30.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 718
AciI CCGC 2 cut(s) 114, 163
AcyI GRCGYC 1 cut(s) 691
AfaI GTAC 2 cut(s) 728, 754
AfiI CCNNNNNNNGG 2 cut(s) 255, 552
AflII CTTAAG 1 cut(s) 297
AgsI TTSAA 7 cut(s) 231, 289, 408, 616, 676, 762, 778
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 4 cut(s) 60, 479, 625, 643
AluI AGCT 4 cut(s) 60, 479, 625, 643
Alw26I GTCTC 2 cut(s) 180, 698
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 2 cut(s) 622, 640
AspS9I GGNCC 2 cut(s) 149, 528
AsuC2I CCSGG 2 cut(s) 153, 588
AsuHPI GGTGA 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 6
AvaII GGWCC 1 cut(s) 528
BanI GGYRCC 1 cut(s) 718
BbsI GAAGAC 1 cut(s) 478
BbvI GCAGC 2 cut(s) 634, 652
BccI CCATC 3 cut(s) 601, 654, 709
BceAI ACGGC 1 cut(s) 538
BciT130I CCWGG 1 cut(s) 368
BcnI CCSGG 2 cut(s) 153, 588
BcoDI GTCTC 2 cut(s) 180, 698
BfaI CTAG 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 638
BfrI CTTAAG 1 cut(s) 297
BfuAI ACCTGC 1 cut(s) 516
BglII AGATCT 1 cut(s) 733
BisI GCNGC 2 cut(s) 623, 641
BlsI GCNGC 2 cut(s) 624, 642
Bme1390I CCNGG 3 cut(s) 153, 368, 588
Bme18I GGWCC 1 cut(s) 528
BmgT120I GGNCC 2 cut(s) 149, 528
BmiI GGNNCC 2 cut(s) 150, 720
BmrFI CCNGG 3 cut(s) 153, 368, 588
BmsI GCATC 1 cut(s) 695
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 404
Bpu14I TTCGAA 1 cut(s) 6
BpuMI CCSGG 2 cut(s) 153, 588
BsaHI GRCGYC 1 cut(s) 691
BsaJI CCNNGG 2 cut(s) 152, 550
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 552
Bse1I ACTGG 2 cut(s) 461, 656
Bse3DI GCAATG 1 cut(s) 494
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 152, 550
BseGI GGATG 1 cut(s) 571
BseLI CCNNNNNNNGG 2 cut(s) 255, 552
BseMI GCAATG 1 cut(s) 494
BseMII CTCAG 3 cut(s) 416, 458, 709
BseNI ACTGG 2 cut(s) 461, 656
BseXI GCAGC 2 cut(s) 634, 652
BsgI GTGCAG 1 cut(s) 641
BshFI GGCC 1 cut(s) 151
BshNI GGYRCC 1 cut(s) 718
BsiSI CCGG 2 cut(s) 152, 587
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 255, 552
BsmAI GTCTC 2 cut(s) 180, 698
BsmBI CGTCTC 1 cut(s) 698
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 1 cut(s) 151
Bsp119I TTCGAA 1 cut(s) 6
Bsp1407I TGTACA 1 cut(s) 752
Bsp143I GATC 1 cut(s) 733
Bsp19I CCATGG 1 cut(s) 550
BspACI CCGC 2 cut(s) 114, 163
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 3 cut(s) 417, 459, 708
BspLI GGNNCC 2 cut(s) 150, 720
BspMAI CTGCAG 1 cut(s) 642
BspMI ACCTGC 1 cut(s) 516
BspT104I TTCGAA 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 718
BspTI CTTAAG 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 494
BsrGI TGTACA 1 cut(s) 752
BsrI ACTGG 2 cut(s) 461, 656
BssECI CCNNGG 2 cut(s) 152, 550
BssMI GATC 1 cut(s) 733
BssNI GRCGYC 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 550
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 4 cut(s) 318, 402, 451, 757
Bst6I CTCTTC 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 691
BstAFI CTTAAG 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 583
BstAUI TGTACA 1 cut(s) 752
BstBI TTCGAA 1 cut(s) 6
BstDEI CTNAG 5 cut(s) 188, 331, 425, 467, 695
BstDSI CCRYGG 1 cut(s) 550
BstENI CCTNNNNNAGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 571
BstKTI GATC 1 cut(s) 736
BstMAI GTCTC 2 cut(s) 180, 698
BstMBI GATC 1 cut(s) 733
BstMWI GCNNNNNNNGC 4 cut(s) 148, 583, 631, 640
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 3 cut(s) 151, 366, 586
BstSFI CTRYAG 1 cut(s) 638
BstV1I GCAGC 2 cut(s) 634, 652
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 1 cut(s) 733
BstYI RGATCY 1 cut(s) 733
BsuRI GGCC 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 550
BtsCI GGATG 1 cut(s) 571
BtsIMutI CAGTG 3 cut(s) 323, 456, 468
BveI ACCTGC 1 cut(s) 516
Cfr13I GGNCC 2 cut(s) 149, 528
CseI GACGC 2 cut(s) 407, 680
Csp6I GTAC 2 cut(s) 727, 753
CviAII CATG 1 cut(s) 551
CviJI RGCY 8 cut(s) 60, 151, 302, 307, 479, 556, 625, 643
CviKI_1 RGCY 8 cut(s) 60, 151, 302, 307, 479, 556, 625, 643
CviQI GTAC 2 cut(s) 727, 753
DdeI CTNAG 5 cut(s) 188, 331, 425, 467, 695
DpnI GATC 1 cut(s) 735
DpnII GATC 1 cut(s) 733
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 528
EcoNI CCTNNNNNAGG 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 550
Esp3I CGTCTC 1 cut(s) 698
FaeI CATG 1 cut(s) 554
FaiI YATR 5 cut(s) 101, 214, 311, 552, 602
FalI AAGNNNNNCTT 2 cut(s) 463, 495
FaqI GGGAC 1 cut(s) 335
FatI CATG 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 623, 641
FokI GGATG 1 cut(s) 578
Fsp4HI GCNGC 2 cut(s) 623, 641
FspBI CTAG 1 cut(s) 34
GluI GCNGC 2 cut(s) 623, 641
GsuI CTGGAG 1 cut(s) 404
HaeIII GGCC 1 cut(s) 151
HapII CCGG 2 cut(s) 152, 587
HgaI GACGC 2 cut(s) 407, 680
Hin1I GRCGYC 1 cut(s) 691
Hin1II CATG 1 cut(s) 554
HinfI GANTC 8 cut(s) 173, 264, 339, 386, 432, 628, 672, 742
HpaII CCGG 2 cut(s) 152, 587
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 130, 682
Hpy188I TCNGA 1 cut(s) 772
Hpy188III TCNNGA 3 cut(s) 34, 383, 697
Hpy8I GTNNAC 2 cut(s) 130, 682
HpyAV CCTTC 3 cut(s) 210, 249, 287
HpyCH4III ACNGT 4 cut(s) 318, 402, 451, 757
HpyCH4IV ACGT 1 cut(s) 559
HpyCH4V TGCA 5 cut(s) 376, 577, 622, 640, 708
HpyF10VI GCNNNNNNNGC 4 cut(s) 148, 583, 631, 640
HpyF3I CTNAG 5 cut(s) 188, 331, 425, 467, 695
HpySE526I ACGT 1 cut(s) 559
Hsp92I GRCGYC 1 cut(s) 691
Hsp92II CATG 1 cut(s) 554
Kzo9I GATC 1 cut(s) 733
LmnI GCTCC 2 cut(s) 639, 648
Lsp1109I GCAGC 2 cut(s) 634, 652
LweI GCATC 1 cut(s) 695
MaeI CTAG 1 cut(s) 34
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 2 cut(s) 222, 261
MalI GATC 1 cut(s) 735
MboI GATC 1 cut(s) 733
MboII GAAGA 6 cut(s) 170, 272, 285, 441, 483, 774
MfeI CAATTG 1 cut(s) 650
MflI RGATCY 1 cut(s) 733
MluCI AATT 4 cut(s) 46, 119, 289, 650
MlyI GAGTC 4 cut(s) 182, 258, 395, 736
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 3 cut(s) 30, 41, 75
MseI TTAA 2 cut(s) 118, 298
MspA1I CMGCKG 2 cut(s) 163, 625
MspCI CTTAAG 1 cut(s) 297
MspI CCGG 2 cut(s) 152, 587
MspR9I CCNGG 3 cut(s) 153, 368, 588
MunI CAATTG 1 cut(s) 650
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 4 cut(s) 148, 583, 631, 640
NciI CCSGG 2 cut(s) 153, 588
NcoI CCATGG 1 cut(s) 550
NdeII GATC 1 cut(s) 733
NlaIII CATG 1 cut(s) 554
NlaIV GGNNCC 2 cut(s) 150, 720
NmuCI GTSAC 2 cut(s) 222, 261
NspV TTCGAA 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 528
PfeI GAWTC 4 cut(s) 339, 432, 628, 672
PkrI GCNGC 2 cut(s) 624, 642
PleI GAGTC 4 cut(s) 181, 258, 394, 736
PpsI GAGTC 4 cut(s) 181, 258, 394, 736
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 150, 720
PspPI GGNCC 2 cut(s) 149, 528
PstI CTGCAG 1 cut(s) 642
PsuI RGATCY 1 cut(s) 733
PvuII CAGCTG 1 cut(s) 625
RsaI GTAC 2 cut(s) 728, 754
RsaNI GTAC 2 cut(s) 727, 753
SaqAI TTAA 2 cut(s) 118, 298
SatI GCNGC 2 cut(s) 623, 641
Sau3AI GATC 1 cut(s) 733
Sau96I GGNCC 2 cut(s) 149, 528
SchI GAGTC 4 cut(s) 182, 258, 395, 736
ScrFI CCNGG 3 cut(s) 153, 368, 588
SfaNI GCATC 1 cut(s) 695
SfcI CTRYAG 1 cut(s) 638
SfuI TTCGAA 1 cut(s) 6
SinI GGWCC 1 cut(s) 528
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 4 cut(s) 46, 119, 289, 650
SsiI CCGC 2 cut(s) 114, 163
SspMI CTAG 1 cut(s) 34
StyD4I CCNGG 3 cut(s) 151, 366, 586
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 4 cut(s) 318, 402, 451, 757
TaiI ACGT 1 cut(s) 562
TaqI TCGA 6 cut(s) 6, 205, 244, 352, 435, 740
TasI AATT 4 cut(s) 46, 119, 289, 650
TatI WGTACW 2 cut(s) 726, 752
TfiI GAWTC 4 cut(s) 339, 432, 628, 672
Tru1I TTAA 2 cut(s) 118, 298
Tru9I TTAA 2 cut(s) 118, 298
TscAI CASTG 3 cut(s) 323, 456, 468
TseFI GTSAC 2 cut(s) 222, 261
TseI GCWGC 2 cut(s) 622, 640
Tsp45I GTSAC 2 cut(s) 222, 261
TspDTI ATGAA 1 cut(s) 229
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 3 cut(s) 323, 456, 468
Vha464I CTTAAG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 528
XagI CCTNNNNNAGG 1 cut(s) 253
XbaI TCTAGA 1 cut(s) 33
XspI CTAG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.