Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008386

Physical Location & Seq

Genomic Coordinates Reverse (-)

18140944 .. 18142435

Gene Structure 1492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43795.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATGGTTCATTTCATTCACCAGAATGGCATGCAGCTCGTTTGGCCAGTCTCAAGACTACACACACTCTTACTTGGGAAGAATATAAGCAGAAGCAAAAGGAAGAAGAATTGAAAAAGCAAGAAGTCGAAGCAGATACCGATAAATTGATGCGTGAGTATAGAGCTCAGCTAGATGCTGAAAGGGCAATGAAGCTCTCTAAGGGAAGGAACTATTCTAGTGACATATCCAGGAAAGATAGGAAGGAGAGAGAGCTCACAGATAGAAAGTGCAGAGATTCCAAGAGGAAGAAAAGCAAAAAGAGAAAGCATTCGAAAAGGCGATCATCAGACTCAAGCTCATCTTCTGAATCTTCAAGTAGTGACAAAGACGAATCTAGGAAGTCAAGGTCAAGTTCTAAGAGGCCAAAGAGGGAGAGGAAACACAAGTCTAGAGGCAGACACTCAAAACCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

18.04

Weight (kDa)

10.28

Isoelectric Point (pI)

66.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43795 AT2G43795 AT3G59800 AT3G59800
fragaria_vesca	FvH4_1g00470
malus_domestica	MD02G1003900.v1.1 MD15G1147200.v1.1
prunus_persica	Prupe.7G267400_v2.0.a1 Prupe.7G267400_v2.0.a1
pyrus_communis	pycom02g00240 pycom15g13210
rosa_chinensis	RchiOBHm_Chr2g0084981
rosa_laevigata	RLG00000015653
rosa_multiflora	Rmu_sc0001196.1_g000004 Rmu_sc0008647.1_g000019
rosa_roxburghii	Rroxscaffold_2G00155660
rosa_rugosa	Rorug01G0457400 Rorug01G0457500
rosa_samantha	Rh2AG005400 Rh2BG006400 Rh2CG006900 Rh2DG006800
rosa_wichuraiana	Rw2G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	115, 357
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	6 cut(s)	38, 167, 172, 196, 256, 339
AluI	AGCT	6 cut(s)	38, 167, 172, 196, 256, 339
Alw21I	GWGCWC	2 cut(s)	169, 258
Alw26I	GTCTC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	45, 404
ApeKI	GCWGC	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	12
AsuII	TTCGAA	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	47
BanII	GRGCYC	2 cut(s)	169, 258
Bbv12I	GWGCWC	2 cut(s)	169, 258
BbvI	GCAGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	4 cut(s)	173, 219, 378, 432
BisI	GCNGC	1 cut(s)	36
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	141, 166
Bpu1102I	GCTNAGC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	38, 319
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	292
BshFI	GGCC	2 cut(s)	47, 406
BsiHKAI	GWGCWC	2 cut(s)	169, 258
BsmAI	GTCTC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	47, 406
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	169, 258
Bsp143I	GATC	1 cut(s)	323
Bsp1720I	GCTNAGC	1 cut(s)	168
BspANI	GGCC	2 cut(s)	47, 406
BspCNI	CTCAG	1 cut(s)	181
BspT104I	TTCGAA	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	232
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	168, 201, 399
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	326
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	323
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 185
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	47, 406
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	33
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	8 cut(s)	38, 47, 167, 172, 196, 256, 339, 406
CviKI_1	RGCY	8 cut(s)	38, 47, 167, 172, 196, 256, 339, 406
DdeI	CTNAG	3 cut(s)	168, 201, 399
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	45
Ecl136II	GAGCTC	2 cut(s)	167, 256
Eco24I	GRGCYC	2 cut(s)	169, 258
Eco53kI	GAGCTC	2 cut(s)	167, 256
EcoICRI	GAGCTC	2 cut(s)	167, 256
EcoRII	CCWGG	1 cut(s)	230
EcoT38I	GRGCYC	2 cut(s)	169, 258
FaeI	CATG	1 cut(s)	35
FaiI	YATR	4 cut(s)	33, 87, 162, 227
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	169, 258
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	4 cut(s)	173, 219, 378, 432
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	47, 406
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	4 cut(s)	278, 332, 350, 374
HphI	GGTGA	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	331, 349
Hpy188III	TCNNGA	2 cut(s)	55, 432
HpyAV	CCTTC	2 cut(s)	201, 238
HpyCH4V	TGCA	2 cut(s)	35, 273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 185
HpyF3I	CTNAG	3 cut(s)	168, 201, 399
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	323
LpnPI	CCDG	4 cut(s)	36, 61, 217, 244
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	2 cut(s)	141, 166
MaeI	CTAG	4 cut(s)	173, 219, 378, 432
MaeIII	GTNAC	2 cut(s)	221, 362
MalI	GATC	1 cut(s)	325
MboI	GATC	1 cut(s)	323
MboII	GAAGA	6 cut(s)	92, 116, 119, 301, 336, 345
MhlI	GDGCHC	2 cut(s)	169, 258
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	2 cut(s)	110, 146
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	5 cut(s)	279, 396, 405, 411, 428
Mox20I	TGGCCA	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	25
Msp20I	TGGCCA	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	232
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	44, 185
NdeII	GATC	1 cut(s)	323
NlaIII	CATG	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	221, 362
NspI	RCATGY	1 cut(s)	35
NspV	TTCGAA	1 cut(s)	314
PaeI	GCATGC	1 cut(s)	35
PctI	GAATGC	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	310
PfeI	GAWTC	3 cut(s)	278, 350, 374
PfoI	TCCNGGA	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp124BI	GAGCTC	2 cut(s)	169, 258
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	25
SacI	GAGCTC	2 cut(s)	169, 258
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	2 cut(s)	169, 258
SetI	ASST	7 cut(s)	40, 169, 174, 198, 258, 341, 392
SfaNI	GCATC	2 cut(s)	141, 166
SfuI	TTCGAA	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	2 cut(s)	53, 334
SmoI	CTYRAG	2 cut(s)	53, 334
SphI	GCATGC	1 cut(s)	35
Sse9I	AATT	2 cut(s)	110, 146
SspMI	CTAG	4 cut(s)	173, 219, 378, 432
SstI	GAGCTC	2 cut(s)	169, 258
StyD4I	CCNGG	1 cut(s)	230
TaqI	TCGA	2 cut(s)	129, 314
TasI	AATT	2 cut(s)	110, 146
TfiI	GAWTC	3 cut(s)	278, 350, 374
TseFI	GTSAC	2 cut(s)	221, 362
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	221, 362
TspDTI	ATGAA	2 cut(s)	5, 206
XbaI	TCTAGA	1 cut(s)	431
XceI	RCATGY	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	310
XspI	CTAG	4 cut(s)	173, 219, 378, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.