AT3G59800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008386
Physical Location & Seq
Reverse (-)
22094363 .. 22096484
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59800.2

Sequence Viewer

Length: 561 bp
ATGGGGAAGAATCAAGCTTACAAGGCTATGCAGAGATCTAGGGTTGGTTCCAGCTCCGCCCAGCCGGATGAGGTTGAAGACGGAATGGTGGATGGTTCATTTCATACACCAGAGTGGCATGCGGCTCGTTTGGCTAGCCTCAAGACTACACATACTATTACCTGGGAAGAGTATAAGCAGAAGCAAAAGGAAGAAGAATTGAAAAAGGGAGAACTTGAAGCAGATACCGATAAACTGATGCGTGAGTATAGAGCTCAGCTGGATGCAGAAAGGTCGTTGAAACTCTCCAAAGGAAGGAACTATTCTAGTGATAAGTCACGAAAAGATAAGAAAGACAGAGATTCAAAGAAGAAGAAAAGCAAAAAGAGAAAGCATTATTCGTCCTCAGAGTCGTCATCTAGCAGTGATGAAGATGAATCTAGAAGATCAAGATCAAGTTCGAAAAGATCAAAGAAGGAGAAGAAGCACAAGTCCAGCAGAGACAAACACTCTAGCAAAAGTAAACACGAAACCGATGGCCCTGTACCACTCTCTAGATTCTTTGGCAATTTGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.47

Weight (kDa)

9.88

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 57, 122
AfaI GTAC 1 cut(s) 525
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 6 cut(s) 77, 202, 218, 280, 345, 553
AjnI CCWGG 1 cut(s) 161
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 4 cut(s) 17, 54, 254, 259
AluI AGCT 4 cut(s) 17, 54, 254, 259
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 474
AoxI GGCC 1 cut(s) 517
AspS9I GGNCC 1 cut(s) 518
AsuII TTCGAA 1 cut(s) 440
AsuNHI GCTAGC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 256
BccI CCATC 2 cut(s) 86, 509
BcgI CGANNNNNNTGC 4 cut(s) 107, 141, 255, 289
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 7 cut(s) 39, 135, 306, 399, 420, 492, 534
BglII AGATCT 1 cut(s) 35
BisI GCNGC 1 cut(s) 123
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 2 cut(s) 228, 253
BmtI GCTAGC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 84
Bpu1102I GCTNAGC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 440
BpuEI CTTGAG 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse8I GATNNNNATC 1 cut(s) 430
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 3 cut(s) 73, 97, 268
BseJI GATNNNNATC 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 269, 399
BseYI CCCAGC 1 cut(s) 60
BshFI GGCC 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 474
BsnI GGCC 1 cut(s) 519
Bsp119I TTCGAA 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 4 cut(s) 35, 425, 431, 446
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 2 cut(s) 57, 122
BspANI GGCC 1 cut(s) 519
BspCNI CTCAG 2 cut(s) 268, 398
BspLI GGNNCC 1 cut(s) 49
BspOI GCTAGC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 440
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 4 cut(s) 35, 425, 431, 446
Bst2UI CCWGG 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 120, 136
BstDEI CTNAG 2 cut(s) 255, 385
BstF5I GGATG 3 cut(s) 73, 97, 268
BstKTI GATC 4 cut(s) 38, 428, 434, 449
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 4 cut(s) 35, 425, 431, 446
BstMWI GCNNNNNNNGC 2 cut(s) 23, 131
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 1 cut(s) 519
BtsCI GGATG 3 cut(s) 73, 97, 268
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 120, 136
Cfr13I GGNCC 1 cut(s) 518
Csp6I GTAC 1 cut(s) 524
CviAII CATG 1 cut(s) 119
CviQI GTAC 1 cut(s) 524
DdeI CTNAG 2 cut(s) 255, 385
DpnI GATC 4 cut(s) 37, 427, 433, 448
DpnII GATC 4 cut(s) 35, 425, 431, 446
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 256
Eco53kI GAGCTC 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 256
FaeI CATG 1 cut(s) 122
FaiI YATR 6 cut(s) 29, 105, 120, 153, 174, 249
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 3 cut(s) 80, 104, 275
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 7 cut(s) 39, 135, 306, 399, 420, 492, 534
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 519
HapII CCGG 1 cut(s) 65
Hin1II CATG 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 5 cut(s) 10, 341, 389, 416, 537
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 503
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 5 cut(s) 142, 318, 420, 429, 534
Hpy8I GTNNAC 1 cut(s) 503
HpyAV CCTTC 2 cut(s) 288, 448
HpyCH4V TGCA 2 cut(s) 31, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 131
HpyF3I CTNAG 2 cut(s) 255, 385
Hsp92II CATG 1 cut(s) 122
Kzo9I GATC 4 cut(s) 35, 425, 431, 446
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 9 cut(s) 64, 74, 78, 123, 148, 175, 245, 487, 534
LweI GCATC 2 cut(s) 228, 253
MaeI CTAG 7 cut(s) 39, 135, 306, 399, 420, 492, 534
MaeIII GTNAC 1 cut(s) 315
MalI GATC 4 cut(s) 37, 427, 433, 448
MboI GATC 4 cut(s) 35, 425, 431, 446
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 3 cut(s) 197, 547, 556
MlyI GAGTC 1 cut(s) 398
MnlI CCTC 3 cut(s) 64, 149, 394
MslI CAYNNNNRTG 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 23, 131
NdeII GATC 4 cut(s) 35, 425, 431, 446
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 315
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 1 cut(s) 440
OliI CACNNNNGTG 1 cut(s) 112
PaeI GCATGC 1 cut(s) 122
PfeI GAWTC 4 cut(s) 10, 341, 416, 537
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 60
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 518
PsuI RGATCY 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 1 cut(s) 525
RsaNI GTAC 1 cut(s) 524
RseI CAYNNNNRTG 1 cut(s) 112
SacI GAGCTC 1 cut(s) 256
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 4 cut(s) 35, 425, 431, 446
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 256
SetI ASST 7 cut(s) 19, 56, 75, 164, 256, 261, 275
SfaNI GCATC 2 cut(s) 228, 253
SfuI TTCGAA 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SphI GCATGC 1 cut(s) 122
Sse9I AATT 3 cut(s) 197, 547, 556
SsiI CCGC 2 cut(s) 57, 122
SspMI CTAG 7 cut(s) 39, 135, 306, 399, 420, 492, 534
SstI GAGCTC 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 161
TaqI TCGA 1 cut(s) 440
TasI AATT 3 cut(s) 197, 547, 556
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 4 cut(s) 10, 341, 416, 537
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 1 cut(s) 315
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 4 cut(s) 87, 92, 423, 429
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 1 cut(s) 409
XbaI TCTAGA 2 cut(s) 419, 533
XceI RCATGY 1 cut(s) 122
XspI CTAG 7 cut(s) 39, 135, 306, 399, 420, 492, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.