RLG00000015653

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008386
Physical Location & Seq
Forward (+)
439836 .. 442146
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015653

Sequence Viewer

Length: 600 bp
ATGGGCAAGAATCAAGCTTACAAAGCTATGCAGAGAGCCAGGCTGGGATCCAGCTCCGCTGGCCCCGATGAGGTCGAAGACGGCATGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCTAGCCTTAAAACTTCTCATACAATTACATGGGAGGAGTATAAAAAGAAGCAAAAGGAAGATGAACTGAGGAAAGGGGAACTGGAAAAAGATACAGATAGAATGATGAGAGAATACAGGGCTCAACTGGATGCCGAAAGGGCTCGCAAGCTTGCCAATGGAAGAAACCACTCTAGTAGCAAGTCTGATCGCAAAAAAGATAAGAAGGATAAAGATTTAAAGAAACGCAGCAGCAGAAAGAGAAAGCATTCAAGAAGGAGATCCTCAGAGTCTAGCTCCTCGACTTCATCGTCAGATTCTTCCAGTAGTGAAGAAGATGACAGAGAATCAAGAAGATCCAAGTCCAGGTCTAAGAGAGCAAAAAAGGAAAAGAAGCACAGGTCAAGAACCAAGCACTCTAGCAGTGATGATGACGAGGCTGATGGCCCTGTTCCACTTTCCCGATTCTTTGGAAGTGTCAAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.89

Weight (kDa)

10.12

Isoelectric Point (pI)

65.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 421
AciI CCGC 1 cut(s) 57
AclWI GGATC 4 cut(s) 42, 55, 387, 462
AfiI CCNNNNNNNGG 2 cut(s) 70, 477
AgsI TTSAA 1 cut(s) 384
AjnI CCWGG 2 cut(s) 38, 476
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 5 cut(s) 17, 26, 54, 283, 408
AluI AGCT 5 cut(s) 17, 26, 54, 283, 408
AlwI GGATC 4 cut(s) 42, 55, 387, 462
AoxI GGCC 2 cut(s) 61, 556
ApeKI GCWGC 3 cut(s) 122, 360, 363
Asp700I GAANNNNTTC 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 62, 557
AsuHPI GGTGA 1 cut(s) 99
AsuNHI GCTAGC 1 cut(s) 134
BamHI GGATCC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 256, 277
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 109, 372, 375
BccI CCATC 2 cut(s) 86, 548
BceAI ACGGC 1 cut(s) 97
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 2 cut(s) 40, 478
BfaI CTAG 4 cut(s) 135, 306, 405, 531
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 3 cut(s) 123, 361, 364
BlsI GCNGC 3 cut(s) 124, 362, 365
Bme1390I CCNGG 2 cut(s) 40, 478
BmgT120I GGNCC 2 cut(s) 62, 557
BmiI GGNNCC 2 cut(s) 49, 64
BmrFI CCNGG 2 cut(s) 40, 478
BmsI GCATC 1 cut(s) 253
BmtI GCTAGC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 392, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 477
Bse1I ACTGG 3 cut(s) 219, 264, 435
BseBI CCWGG 2 cut(s) 40, 478
BseGI GGATG 2 cut(s) 97, 268
BseLI CCNNNNNNNGG 2 cut(s) 70, 477
BseMII CTCAG 2 cut(s) 191, 411
BseNI ACTGG 3 cut(s) 219, 264, 435
BseRI GAGGAG 2 cut(s) 182, 400
BseXI GCAGC 3 cut(s) 109, 372, 375
BseYI CCCAGC 1 cut(s) 43
BshFI GGCC 2 cut(s) 63, 558
BslI CCNNNNNNNGG 2 cut(s) 70, 477
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 2 cut(s) 63, 558
Bsp1286I GDGCHC 2 cut(s) 256, 277
Bsp143I GATC 4 cut(s) 47, 319, 392, 467
BspACI CCGC 1 cut(s) 57
BspANI GGCC 2 cut(s) 63, 558
BspCNI CTCAG 2 cut(s) 192, 410
BspLI GGNNCC 2 cut(s) 49, 64
BspOI GCTAGC 1 cut(s) 138
BspPI GGATC 4 cut(s) 42, 55, 387, 462
BsrI ACTGG 3 cut(s) 219, 264, 435
BssMI GATC 4 cut(s) 47, 319, 392, 467
Bst2UI CCWGG 2 cut(s) 40, 478
BstC8I GCNNGC 6 cut(s) 61, 120, 136, 277, 281, 285
BstDEI CTNAG 3 cut(s) 200, 397, 483
BstF5I GGATG 2 cut(s) 97, 268
BstKTI GATC 4 cut(s) 50, 322, 395, 470
BstMBI GATC 4 cut(s) 47, 319, 392, 467
BstMWI GCNNNNNNNGC 4 cut(s) 23, 60, 131, 272
BstNI CCWGG 2 cut(s) 40, 478
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 2 cut(s) 38, 476
BstV1I GCAGC 3 cut(s) 109, 372, 375
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 3 cut(s) 47, 392, 467
BstYI RGATCY 3 cut(s) 47, 392, 467
BsuRI GGCC 2 cut(s) 63, 558
BtsCI GGATG 2 cut(s) 97, 268
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 1 cut(s) 541
Cac8I GCNNGC 6 cut(s) 61, 120, 136, 277, 281, 285
Cfr13I GGNCC 2 cut(s) 62, 557
CviAII CATG 3 cut(s) 85, 119, 162
DdeI CTNAG 3 cut(s) 200, 397, 483
DpnI GATC 4 cut(s) 49, 321, 394, 469
DpnII GATC 4 cut(s) 47, 319, 392, 467
DraI TTTAAA 1 cut(s) 351
DrdI GACNNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 421
Eco24I GRGCYC 2 cut(s) 256, 277
EcoRII CCWGG 2 cut(s) 38, 476
EcoT38I GRGCYC 2 cut(s) 256, 277
FaeI CATG 3 cut(s) 88, 122, 165
FaiI YATR 6 cut(s) 29, 86, 120, 153, 163, 174
FatI CATG 3 cut(s) 84, 118, 161
Fnu4HI GCNGC 3 cut(s) 123, 361, 364
FokI GGATG 2 cut(s) 104, 275
FriOI GRGCYC 2 cut(s) 256, 277
Fsp4HI GCNGC 3 cut(s) 123, 361, 364
FspBI CTAG 4 cut(s) 135, 306, 405, 531
GluI GCNGC 3 cut(s) 123, 361, 364
GsaI CCCAGC 1 cut(s) 47
HaeIII GGCC 2 cut(s) 63, 558
Hin1II CATG 3 cut(s) 88, 122, 165
HindIII AAGCTT 2 cut(s) 15, 281
HinfI GANTC 5 cut(s) 10, 401, 428, 458, 576
HphI GGTGA 1 cut(s) 99
Hpy188I TCNGA 3 cut(s) 319, 400, 427
Hpy188III TCNNGA 5 cut(s) 384, 462, 516, 573, 592
HpyAV CCTTC 2 cut(s) 331, 381
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 60, 131, 272
HpyF3I CTNAG 3 cut(s) 200, 397, 483
Hsp92II CATG 3 cut(s) 88, 122, 165
Kzo9I GATC 4 cut(s) 47, 319, 392, 467
LmnI GCTCC 2 cut(s) 59, 413
Lsp1109I GCAGC 3 cut(s) 109, 372, 375
LweI GCATC 1 cut(s) 253
MaeI CTAG 4 cut(s) 135, 306, 405, 531
MalI GATC 4 cut(s) 49, 321, 394, 469
MboI GATC 4 cut(s) 47, 319, 392, 467
MboII GAAGA 7 cut(s) 89, 203, 306, 423, 455, 458, 477
MflI RGATCY 3 cut(s) 47, 392, 467
MhlI GDGCHC 2 cut(s) 256, 277
MluCI AATT 1 cut(s) 156
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 6 cut(s) 64, 160, 195, 406, 421, 541
MroXI GAANNNNTTC 1 cut(s) 379
MseI TTAA 2 cut(s) 141, 350
MslI CAYNNNNRTG 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 40, 478
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 2 cut(s) 40, 478
MwoI GCNNNNNNNGC 4 cut(s) 23, 60, 131, 272
NdeII GATC 4 cut(s) 47, 319, 392, 467
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 3 cut(s) 88, 122, 165
NlaIV GGNNCC 2 cut(s) 49, 64
NspI RCATGY 1 cut(s) 122
OliI CACNNNNGTG 1 cut(s) 112
PaeI GCATGC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PctI GAATGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 379
PfeI GAWTC 4 cut(s) 10, 428, 458, 576
PkrI GCNGC 3 cut(s) 124, 362, 365
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 38, 476
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 2 cut(s) 38, 476
PspN4I GGNNCC 2 cut(s) 49, 64
PspPI GGNCC 2 cut(s) 62, 557
PsuI RGATCY 3 cut(s) 47, 392, 467
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 2 cut(s) 141, 350
SatI GCNGC 3 cut(s) 123, 361, 364
Sau3AI GATC 4 cut(s) 47, 319, 392, 467
Sau96I GGNCC 2 cut(s) 62, 557
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 40, 478
SduI GDGCHC 2 cut(s) 256, 277
SetI ASST 8 cut(s) 19, 28, 56, 75, 285, 410, 482, 515
SfaNI GCATC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 112
SphI GCATGC 1 cut(s) 122
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 57
SspMI CTAG 4 cut(s) 135, 306, 405, 531
StyD4I CCNGG 2 cut(s) 38, 476
TaqI TCGA 2 cut(s) 75, 413
TasI AATT 1 cut(s) 156
TfiI GAWTC 4 cut(s) 10, 428, 458, 576
Tru1I TTAA 2 cut(s) 141, 350
Tru9I TTAA 2 cut(s) 141, 350
TscAI CASTG 1 cut(s) 541
TseI GCWGC 3 cut(s) 122, 360, 363
TspDTI ATGAA 4 cut(s) 87, 92, 210, 408
TspRI CASTG 1 cut(s) 541
XceI RCATGY 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 379
XspI CTAG 4 cut(s) 135, 306, 405, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.