Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008386

Physical Location & Seq

Genomic Coordinates Forward (+)

254661 .. 257633

Gene Structure 2973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGGAAGAATCAAGCTTACAAAGCTATGCAGAGAGCAAGGCTGGGATCCAGCTCTGCTGGCCCCGATGAGGTCGAAGACGGCATGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCTAGCCTCAAAACTTCCCACACAGTTACCTGGGAGGAGTATAAAAGGAAGCAAAAGGAAGATGAACTGAGAAAGGGGGAACTGGAAAAAGATACCGATAGAATGATGAGAGAATACAGGGCTCAACTGGATGCCGAGAGGGCTCGCAAGCTTGCCAACGGAAGAAACCACTCTAGTAGCAAGTCTGATCACAAGAAAGATAAGAAGGATAAAGATTTAAAGAAACGCAGCAGCAGCAGAAAGAGAAAGCATTCAAGAAGGAGATCTTCAGAGTCTAGCTCCTCATCTTCATCGTCAGATTCTTCCAGTAGTGAAGAAGACGACAGAAAATCAAGAAGATCCAAGTCCAGGTCTAAGAGAACAAAAAAGGAAAAGAAGCACAAGTCAAGAACCAAGCACTCTAGCAGCAGTGACAGTGACAGTGACGAGGCTGATGGCCCTGTTCCACTTTCGCGATTCTTTGAAAGTGTCAAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

23.22

Weight (kDa)

10.04

Isoelectric Point (pI)

70.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43795 AT2G43795 AT3G59800 AT3G59800
fragaria_vesca	FvH4_1g00470
malus_domestica	MD02G1003900.v1.1 MD15G1147200.v1.1
prunus_persica	Prupe.7G267400_v2.0.a1 Prupe.7G267400_v2.0.a1
pyrus_communis	pycom02g00240 pycom15g13210
rosa_chinensis	RchiOBHm_Chr2g0084981
rosa_laevigata	RLG00000015653
rosa_multiflora	Rmu_sc0001196.1_g000004 Rmu_sc0008647.1_g000019
rosa_roxburghii	Rroxscaffold_2G00155660
rosa_rugosa	Rorug01G0457400 Rorug01G0457500
rosa_samantha	Rh2AG005400 Rh2BG006400 Rh2CG006900 Rh2DG006800
rosa_wichuraiana	Rw2G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	586
AclWI	GGATC	3 cut(s)	42, 55, 465
AcuI	CTGAAG	1 cut(s)	384
AfiI	CCNNNNNNNGG	2 cut(s)	70, 480
AgsI	TTSAA	2 cut(s)	387, 596
AjnI	CCWGG	2 cut(s)	161, 479
AleI	CACNNNNGTG	1 cut(s)	112
AluBI	AGCT	6 cut(s)	17, 26, 54, 283, 411, 609
AluI	AGCT	6 cut(s)	17, 26, 54, 283, 411, 609
AlwI	GGATC	3 cut(s)	42, 55, 465
AoxI	GGCC	2 cut(s)	61, 568
ApeKI	GCWGC	5 cut(s)	122, 360, 363, 366, 537
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	62, 569
AsuHPI	GGTGA	1 cut(s)	99
AsuNHI	GCTAGC	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	47
BanII	GRGCYC	2 cut(s)	256, 277
BbsI	GAAGAC	2 cut(s)	84, 456
BbvI	GCAGC	5 cut(s)	109, 372, 375, 378, 549
BccI	CCATC	2 cut(s)	86, 560
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	2 cut(s)	163, 481
BclI	TGATCA	1 cut(s)	319
BfaI	CTAG	5 cut(s)	135, 306, 408, 534, 610
BglI	GCCNNNNNGGC	1 cut(s)	272
BglII	AGATCT	1 cut(s)	395
BisI	GCNGC	5 cut(s)	123, 361, 364, 367, 538
BlsI	GCNGC	5 cut(s)	124, 362, 365, 368, 539
Bme1390I	CCNGG	2 cut(s)	163, 481
BmgT120I	GGNCC	2 cut(s)	62, 569
BmiI	GGNNCC	2 cut(s)	49, 64
BmrFI	CCNGG	2 cut(s)	163, 481
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	138
BpiI	GAAGAC	2 cut(s)	84, 456
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 480
Bse1I	ACTGG	3 cut(s)	219, 264, 438
BseBI	CCWGG	2 cut(s)	163, 481
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	97, 268
BseLI	CCNNNNNNNGG	2 cut(s)	70, 480
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	3 cut(s)	219, 264, 438
BseRI	GAGGAG	2 cut(s)	182, 403
BseXI	GCAGC	5 cut(s)	109, 372, 375, 378, 549
BseYI	CCCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	586
BshFI	GGCC	2 cut(s)	63, 570
BslI	CCNNNNNNNGG	2 cut(s)	70, 480
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	63, 570
Bsp1286I	GDGCHC	2 cut(s)	256, 277
Bsp143I	GATC	4 cut(s)	47, 319, 395, 470
Bsp68I	TCGCGA	1 cut(s)	586
BspANI	GGCC	2 cut(s)	63, 570
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	586
BspLI	GGNNCC	2 cut(s)	49, 64
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	3 cut(s)	42, 55, 465
BsrI	ACTGG	3 cut(s)	219, 264, 438
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	4 cut(s)	47, 319, 395, 470
Bst2UI	CCWGG	2 cut(s)	163, 481
Bst4CI	ACNGT	3 cut(s)	157, 548, 554
BstC8I	GCNNGC	6 cut(s)	61, 120, 136, 277, 281, 285
BstDEI	CTNAG	2 cut(s)	200, 486
BstF5I	GGATG	2 cut(s)	97, 268
BstFNI	CGCG	1 cut(s)	586
BstKTI	GATC	4 cut(s)	50, 322, 398, 473
BstMBI	GATC	4 cut(s)	47, 319, 395, 470
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 60, 131, 272, 366
BstNI	CCWGG	2 cut(s)	163, 481
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	161, 479
BstUI	CGCG	1 cut(s)	586
BstV1I	GCAGC	5 cut(s)	109, 372, 375, 378, 549
BstV2I	GAAGAC	2 cut(s)	84, 456
BstX2I	RGATCY	3 cut(s)	47, 395, 470
BstYI	RGATCY	3 cut(s)	47, 395, 470
BsuRI	GGCC	2 cut(s)	63, 570
BtsCI	GGATG	2 cut(s)	97, 268
BtsI	GCAGTG	1 cut(s)	547
BtsIMutI	CAGTG	3 cut(s)	547, 553, 559
BtuMI	TCGCGA	1 cut(s)	586
Cac8I	GCNNGC	6 cut(s)	61, 120, 136, 277, 281, 285
Cfr13I	GGNCC	2 cut(s)	62, 569
CviAII	CATG	2 cut(s)	85, 119
DdeI	CTNAG	2 cut(s)	200, 486
DpnI	GATC	4 cut(s)	49, 321, 397, 472
DpnII	GATC	4 cut(s)	47, 319, 395, 470
DraI	TTTAAA	1 cut(s)	351
Eco24I	GRGCYC	2 cut(s)	256, 277
Eco57I	CTGAAG	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	161, 479
EcoT38I	GRGCYC	2 cut(s)	256, 277
FaeI	CATG	2 cut(s)	88, 122
FaiI	YATR	4 cut(s)	29, 86, 120, 174
FalI	AAGNNNNNCTT	2 cut(s)	382, 414
FatI	CATG	2 cut(s)	84, 118
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	5 cut(s)	123, 361, 364, 367, 538
FokI	GGATG	2 cut(s)	104, 275
FriOI	GRGCYC	2 cut(s)	256, 277
Fsp4HI	GCNGC	5 cut(s)	123, 361, 364, 367, 538
FspBI	CTAG	5 cut(s)	135, 306, 408, 534, 610
GluI	GCNGC	5 cut(s)	123, 361, 364, 367, 538
GsaI	CCCAGC	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	63, 570
Hin1II	CATG	2 cut(s)	88, 122
HindIII	AAGCTT	2 cut(s)	15, 281
HinfI	GANTC	4 cut(s)	10, 404, 431, 588
HphI	GGTGA	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	319, 403, 430
Hpy188III	TCNNGA	5 cut(s)	387, 465, 519, 585, 604
HpyAV	CCTTC	2 cut(s)	331, 384
HpyCH4III	ACNGT	3 cut(s)	157, 548, 554
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 60, 131, 272, 366
HpyF3I	CTNAG	2 cut(s)	200, 486
Hsp92II	CATG	2 cut(s)	88, 122
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	47, 319, 395, 470
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	5 cut(s)	109, 372, 375, 378, 549
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	5 cut(s)	135, 306, 408, 534, 610
MaeIII	GTNAC	4 cut(s)	157, 542, 548, 554
MalI	GATC	4 cut(s)	49, 321, 397, 472
MboI	GATC	4 cut(s)	47, 319, 395, 470
MflI	RGATCY	3 cut(s)	47, 395, 470
MhlI	GDGCHC	2 cut(s)	256, 277
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	6 cut(s)	64, 149, 160, 264, 424, 553
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	163, 481
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	2 cut(s)	163, 481
MvnI	CGCG	1 cut(s)	586
MwoI	GCNNNNNNNGC	5 cut(s)	23, 60, 131, 272, 366
NdeII	GATC	4 cut(s)	47, 319, 395, 470
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	88, 122
NlaIV	GGNNCC	2 cut(s)	49, 64
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	3 cut(s)	542, 548, 554
NruI	TCGCGA	1 cut(s)	586
NspI	RCATGY	1 cut(s)	122
OliI	CACNNNNGTG	1 cut(s)	112
PaeI	GCATGC	1 cut(s)	122
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	3 cut(s)	10, 431, 588
PkrI	GCNGC	5 cut(s)	124, 362, 365, 368, 539
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Psp6I	CCWGG	2 cut(s)	161, 479
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	2 cut(s)	161, 479
PspN4I	GGNNCC	2 cut(s)	49, 64
PspPI	GGNCC	2 cut(s)	62, 569
PsuI	RGATCY	3 cut(s)	47, 395, 470
RruI	TCGCGA	1 cut(s)	586
RseI	CAYNNNNRTG	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	5 cut(s)	123, 361, 364, 367, 538
Sau3AI	GATC	4 cut(s)	47, 319, 395, 470
Sau96I	GGNCC	2 cut(s)	62, 569
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	163, 481
SduI	GDGCHC	2 cut(s)	256, 277
SetI	ASST	9 cut(s)	19, 28, 56, 75, 164, 285, 413, 485, 611
SfaNI	GCATC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	112
SphI	GCATGC	1 cut(s)	122
SspMI	CTAG	5 cut(s)	135, 306, 408, 534, 610
StyD4I	CCNGG	2 cut(s)	161, 479
TaaI	ACNGT	3 cut(s)	157, 548, 554
TaqI	TCGA	1 cut(s)	75
TfiI	GAWTC	3 cut(s)	10, 431, 588
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	3 cut(s)	547, 553, 559
TseFI	GTSAC	3 cut(s)	542, 548, 554
TseI	GCWGC	5 cut(s)	122, 360, 363, 366, 537
Tsp45I	GTSAC	3 cut(s)	542, 548, 554
TspDTI	ATGAA	4 cut(s)	87, 92, 210, 411
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	3 cut(s)	547, 553, 559
XceI	RCATGY	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	382
XspI	CTAG	5 cut(s)	135, 306, 408, 534, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.