RchiOBHm_Chr2g0084981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008386
Physical Location & Seq
Forward (+)
569204 .. 572082
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46054

Sequence Viewer

Length: 612 bp
ATGGGCAAGAATCAAGCTTACAAAGCTATGCAGAGAGCCAGGCTGGGATCCAGCTCCGCTGGCCCCGATGAGGTCGAAGACGGCATGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCTAGCCTTAAAACTTCTCATACAATTACCTGGGAGGAGTATAAAAAGAAGCAAAAGGAAGATGAACTGAGAAAAGGGGAACTGGAAAAAGATACCGATAGAATGATGAGAGAATACAGGGCTCAACTGGATGCCGAAAGGGCTCGCAAGCTTGCCAATGGAAGAAACCACTCTAGTAGCAAGTCTGATCGCAAAAAAGATAAGAAGGATAAAGATTTAAAGAAACGCAGCAGCAGCAGCAGCAGCAGAAAGAGAAAGCATTCAAGAAGGAGATCCTCAGAGTCTAGCTCCTCGACTTCATCGTCAGATTCTTCCAGTAGTGAAGAAGATGACAGAGAATCAAGAAGATCCAAGTCCAGGTCTAAGAGAACAAAAAAGGAAAAGAAGCACAGGTCAAGAACCAAGCACTCTAGCAGTGATGATGACGAGGCTGATGGCCCTGTTCCACTTTCCCGATTCTTTGGAAGTGTCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.2

Weight (kDa)

10.07

Isoelectric Point (pI)

66.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 433
AciI CCGC 1 cut(s) 57
AclWI GGATC 4 cut(s) 42, 55, 399, 474
AfiI CCNNNNNNNGG 2 cut(s) 70, 489
AgsI TTSAA 1 cut(s) 396
AjnI CCWGG 3 cut(s) 38, 161, 488
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 6 cut(s) 17, 26, 54, 283, 420, 609
AluI AGCT 6 cut(s) 17, 26, 54, 283, 420, 609
AlwI GGATC 4 cut(s) 42, 55, 399, 474
AoxI GGCC 2 cut(s) 61, 568
ApeKI GCWGC 7 cut(s) 122, 360, 363, 366, 369, 372, 375
Asp700I GAANNNNTTC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 62, 569
AsuHPI GGTGA 1 cut(s) 99
AsuNHI GCTAGC 1 cut(s) 134
BamHI GGATCC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 256, 277
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 7 cut(s) 109, 372, 375, 378, 381, 384, 387
BccI CCATC 2 cut(s) 86, 560
BceAI ACGGC 1 cut(s) 97
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 3 cut(s) 40, 163, 490
BfaI CTAG 5 cut(s) 135, 306, 417, 543, 610
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 7 cut(s) 123, 361, 364, 367, 370, 373, 376
BlsI GCNGC 7 cut(s) 124, 362, 365, 368, 371, 374, 377
Bme1390I CCNGG 3 cut(s) 40, 163, 490
BmgT120I GGNCC 2 cut(s) 62, 569
BmiI GGNNCC 2 cut(s) 49, 64
BmrFI CCNGG 3 cut(s) 40, 163, 490
BmsI GCATC 1 cut(s) 253
BmtI GCTAGC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 489
Bse1I ACTGG 3 cut(s) 219, 264, 447
BseBI CCWGG 3 cut(s) 40, 163, 490
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 97, 268
BseLI CCNNNNNNNGG 2 cut(s) 70, 489
BseMII CTCAG 2 cut(s) 191, 423
BseNI ACTGG 3 cut(s) 219, 264, 447
BseRI GAGGAG 2 cut(s) 182, 412
BseXI GCAGC 7 cut(s) 109, 372, 375, 378, 381, 384, 387
BseYI CCCAGC 1 cut(s) 43
BshFI GGCC 2 cut(s) 63, 570
BslI CCNNNNNNNGG 2 cut(s) 70, 489
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 2 cut(s) 63, 570
Bsp1286I GDGCHC 2 cut(s) 256, 277
Bsp143I GATC 4 cut(s) 47, 319, 404, 479
BspACI CCGC 1 cut(s) 57
BspANI GGCC 2 cut(s) 63, 570
BspCNI CTCAG 2 cut(s) 192, 422
BspLI GGNNCC 2 cut(s) 49, 64
BspOI GCTAGC 1 cut(s) 138
BspPI GGATC 4 cut(s) 42, 55, 399, 474
BsrI ACTGG 3 cut(s) 219, 264, 447
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 4 cut(s) 47, 319, 404, 479
Bst2UI CCWGG 3 cut(s) 40, 163, 490
BstC8I GCNNGC 6 cut(s) 61, 120, 136, 277, 281, 285
BstDEI CTNAG 3 cut(s) 200, 409, 495
BstF5I GGATG 2 cut(s) 97, 268
BstKTI GATC 4 cut(s) 50, 322, 407, 482
BstMBI GATC 4 cut(s) 47, 319, 404, 479
BstMWI GCNNNNNNNGC 8 cut(s) 23, 60, 131, 272, 366, 369, 372, 375
BstNI CCWGG 3 cut(s) 40, 163, 490
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 3 cut(s) 38, 161, 488
BstV1I GCAGC 7 cut(s) 109, 372, 375, 378, 381, 384, 387
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 3 cut(s) 47, 404, 479
BstYI RGATCY 3 cut(s) 47, 404, 479
BsuRI GGCC 2 cut(s) 63, 570
BtsCI GGATG 2 cut(s) 97, 268
BtsI GCAGTG 1 cut(s) 553
BtsIMutI CAGTG 1 cut(s) 553
Cac8I GCNNGC 6 cut(s) 61, 120, 136, 277, 281, 285
Cfr13I GGNCC 2 cut(s) 62, 569
CviAII CATG 2 cut(s) 85, 119
DdeI CTNAG 3 cut(s) 200, 409, 495
DpnI GATC 4 cut(s) 49, 321, 406, 481
DpnII GATC 4 cut(s) 47, 319, 404, 479
DraI TTTAAA 1 cut(s) 351
DrdI GACNNNNNNGTC 1 cut(s) 433
DseDI GACNNNNNNGTC 1 cut(s) 433
Eco24I GRGCYC 2 cut(s) 256, 277
EcoRII CCWGG 3 cut(s) 38, 161, 488
EcoT38I GRGCYC 2 cut(s) 256, 277
FaeI CATG 2 cut(s) 88, 122
FaiI YATR 5 cut(s) 29, 86, 120, 153, 174
FatI CATG 2 cut(s) 84, 118
Fnu4HI GCNGC 7 cut(s) 123, 361, 364, 367, 370, 373, 376
FokI GGATG 2 cut(s) 104, 275
FriOI GRGCYC 2 cut(s) 256, 277
Fsp4HI GCNGC 7 cut(s) 123, 361, 364, 367, 370, 373, 376
FspBI CTAG 5 cut(s) 135, 306, 417, 543, 610
GluI GCNGC 7 cut(s) 123, 361, 364, 367, 370, 373, 376
GsaI CCCAGC 1 cut(s) 47
HaeIII GGCC 2 cut(s) 63, 570
Hin1II CATG 2 cut(s) 88, 122
HindIII AAGCTT 2 cut(s) 15, 281
HinfI GANTC 5 cut(s) 10, 413, 440, 470, 588
HphI GGTGA 1 cut(s) 99
Hpy188I TCNGA 3 cut(s) 319, 412, 439
Hpy188III TCNNGA 5 cut(s) 396, 474, 528, 585, 604
HpyAV CCTTC 2 cut(s) 331, 393
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 60, 131, 272, 366, 369, 372, 375
HpyF3I CTNAG 3 cut(s) 200, 409, 495
Hsp92II CATG 2 cut(s) 88, 122
Kzo9I GATC 4 cut(s) 47, 319, 404, 479
LmnI GCTCC 2 cut(s) 59, 425
Lsp1109I GCAGC 7 cut(s) 109, 372, 375, 378, 381, 384, 387
LweI GCATC 1 cut(s) 253
MaeI CTAG 5 cut(s) 135, 306, 417, 543, 610
MalI GATC 4 cut(s) 49, 321, 406, 481
MboI GATC 4 cut(s) 47, 319, 404, 479
MboII GAAGA 7 cut(s) 89, 203, 306, 435, 467, 470, 489
MflI RGATCY 3 cut(s) 47, 404, 479
MhlI GDGCHC 2 cut(s) 256, 277
MluCI AATT 1 cut(s) 156
MlyI GAGTC 1 cut(s) 422
MnlI CCTC 5 cut(s) 64, 160, 418, 433, 553
MroXI GAANNNNTTC 1 cut(s) 391
MseI TTAA 2 cut(s) 141, 350
MslI CAYNNNNRTG 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 59
MspR9I CCNGG 3 cut(s) 40, 163, 490
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 3 cut(s) 40, 163, 490
MwoI GCNNNNNNNGC 8 cut(s) 23, 60, 131, 272, 366, 369, 372, 375
NdeII GATC 4 cut(s) 47, 319, 404, 479
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 2 cut(s) 88, 122
NlaIV GGNNCC 2 cut(s) 49, 64
NspI RCATGY 1 cut(s) 122
OliI CACNNNNGTG 1 cut(s) 112
PaeI GCATGC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 431
PctI GAATGC 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 391
PfeI GAWTC 4 cut(s) 10, 440, 470, 588
PkrI GCNGC 7 cut(s) 124, 362, 365, 368, 371, 374, 377
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp6I CCWGG 3 cut(s) 38, 161, 488
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 3 cut(s) 38, 161, 488
PspN4I GGNNCC 2 cut(s) 49, 64
PspPI GGNCC 2 cut(s) 62, 569
PsuI RGATCY 3 cut(s) 47, 404, 479
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 2 cut(s) 141, 350
SatI GCNGC 7 cut(s) 123, 361, 364, 367, 370, 373, 376
Sau3AI GATC 4 cut(s) 47, 319, 404, 479
Sau96I GGNCC 2 cut(s) 62, 569
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 3 cut(s) 40, 163, 490
SduI GDGCHC 2 cut(s) 256, 277
SfaNI GCATC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 112
SphI GCATGC 1 cut(s) 122
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 57
SspMI CTAG 5 cut(s) 135, 306, 417, 543, 610
StyD4I CCNGG 3 cut(s) 38, 161, 488
TaqI TCGA 2 cut(s) 75, 425
TasI AATT 1 cut(s) 156
TfiI GAWTC 4 cut(s) 10, 440, 470, 588
Tru1I TTAA 2 cut(s) 141, 350
Tru9I TTAA 2 cut(s) 141, 350
TscAI CASTG 1 cut(s) 553
TseI GCWGC 7 cut(s) 122, 360, 363, 366, 369, 372, 375
TspDTI ATGAA 4 cut(s) 87, 92, 210, 420
TspRI CASTG 1 cut(s) 553
XceI RCATGY 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 391
XspI CTAG 5 cut(s) 135, 306, 417, 543, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.