Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008386

Physical Location & Seq

Genomic Coordinates Reverse (-)

22041716 .. 22045260

Gene Structure 3545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G267400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGCAAAAATCAAGCTTACAAGGCTATGCAGAGAGCCAGGCTCGGCTCCAGCTCTGCTGGCCCTGATGAGGTCGAAGACGGCATGGGTAGATTTCAAGGAAACTTTGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCTAGCCTCAAAACTTCTCATACAATTACCTGGGAGGAGTATAAAAAGAAGCAAAAGGAAGACGAAATTAGAAAGGGAGAACTGGAAAAAGACACTGATAGAATGATGAGAGAATACAGAGCTCAACTGGATGCCGAACGGGCTCGCAAGCTTGCCAATGGAAGAAACCACTCCAGTAGTAAGTCTGATCGCAAAAAAGATAGGAAGGATAAGGATTTAAAGAAACGCAGCAGCAGAAAGAGAAAGCATTCAAGAAGGAGATCTTCAGAGTCTAGCTCCTCGAGTTCATCCTCAGATTCTTACAGTAGTGAAGAAGAAGAGAGAGATTCGAAAAGATCCAAGTCCAGGTCTAAGAGAACAAGGAAGGAAAAGAAGCACAGGTCAAGGACCAAACACTCCAGCAGTGATGATGACGAGGCTGATGGTCCTGTGCCACTTTCAAGATTCTTTGGGAGCGTGAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.76

Weight (kDa)

10.12

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43795 AT2G43795 AT3G59800 AT3G59800
fragaria_vesca	FvH4_1g00470
malus_domestica	MD02G1003900.v1.1 MD15G1147200.v1.1
prunus_persica	Prupe.7G267400_v2.0.a1 Prupe.7G267400_v2.0.a1
pyrus_communis	pycom02g00240 pycom15g13210
rosa_chinensis	RchiOBHm_Chr2g0084981
rosa_laevigata	RLG00000015653
rosa_multiflora	Rmu_sc0001196.1_g000004 Rmu_sc0008647.1_g000019
rosa_roxburghii	Rroxscaffold_2G00155660
rosa_rugosa	Rorug01G0457400 Rorug01G0457500
rosa_samantha	Rh2AG005400 Rh2BG006400 Rh2CG006900 Rh2DG006800
rosa_wichuraiana	Rw2G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	70, 498
AgsI	TTSAA	3 cut(s)	98, 405, 594
AjnI	CCWGG	3 cut(s)	38, 182, 497
AleI	CACNNNNGTG	1 cut(s)	133
AluBI	AGCT	6 cut(s)	17, 54, 275, 304, 429, 618
AluI	AGCT	6 cut(s)	17, 54, 275, 304, 429, 618
Alw21I	GWGCWC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	483
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	3 cut(s)	143, 381, 384
Asp700I	GAANNNNTTC	1 cut(s)	400
AspS9I	GGNCC	3 cut(s)	62, 540, 578
AsuHPI	GGTGA	1 cut(s)	120
AsuII	TTCGAA	1 cut(s)	482
AsuNHI	GCTAGC	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	2 cut(s)	540, 578
BanII	GRGCYC	2 cut(s)	277, 298
BbsI	GAAGAC	2 cut(s)	84, 219
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	3 cut(s)	130, 393, 396
BccI	CCATC	2 cut(s)	107, 569
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	3 cut(s)	40, 184, 499
BfaI	CTAG	2 cut(s)	156, 426
BglI	GCCNNNNNGGC	1 cut(s)	293
BglII	AGATCT	1 cut(s)	413
BisI	GCNGC	3 cut(s)	144, 382, 385
BlsI	GCNGC	3 cut(s)	145, 383, 386
Bme1390I	CCNGG	3 cut(s)	40, 184, 499
Bme18I	GGWCC	2 cut(s)	540, 578
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	3 cut(s)	62, 540, 578
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	3 cut(s)	40, 184, 499
BmsI	GCATC	1 cut(s)	274
BmtI	GCTAGC	1 cut(s)	159
BpiI	GAAGAC	2 cut(s)	84, 219
BplI	GAGNNNNNCTC	4 cut(s)	27, 59, 413, 445
BpmI	CTGGAG	3 cut(s)	34, 310, 535
Bpu14I	TTCGAA	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 498
Bse1I	ACTGG	3 cut(s)	240, 285, 327
BseBI	CCWGG	3 cut(s)	40, 184, 499
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	118, 289, 440
BseLI	CCNNNNNNNGG	2 cut(s)	70, 498
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	3 cut(s)	240, 285, 327
BseRI	GAGGAG	2 cut(s)	203, 421
BseXI	GCAGC	3 cut(s)	130, 393, 396
BshFI	GGCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	70, 498
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	63
BsoBI	CYCGRG	1 cut(s)	433
Bsp119I	TTCGAA	1 cut(s)	482
Bsp1286I	GDGCHC	2 cut(s)	277, 298
Bsp143I	GATC	3 cut(s)	340, 413, 488
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	458
BspLI	GGNNCC	1 cut(s)	49
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	483
BspQI	GCTCTTC	1 cut(s)	608
BspT104I	TTCGAA	1 cut(s)	482
BsrI	ACTGG	3 cut(s)	240, 285, 327
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	3 cut(s)	340, 413, 488
Bst2UI	CCWGG	3 cut(s)	40, 184, 499
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	2 cut(s)	465, 608
BstBI	TTCGAA	1 cut(s)	482
BstC8I	GCNNGC	6 cut(s)	61, 141, 157, 298, 302, 306
BstDEI	CTNAG	2 cut(s)	445, 504
BstF5I	GGATG	3 cut(s)	118, 289, 440
BstKTI	GATC	3 cut(s)	343, 416, 491
BstMBI	GATC	3 cut(s)	340, 413, 488
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 60, 152, 293, 615
BstNI	CCWGG	3 cut(s)	40, 184, 499
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	38, 182, 497
BstV1I	GCAGC	3 cut(s)	130, 393, 396
BstV2I	GAAGAC	2 cut(s)	84, 219
BstX2I	RGATCY	2 cut(s)	413, 488
BstYI	RGATCY	2 cut(s)	413, 488
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	118, 289, 440
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	246, 562
Cac8I	GCNNGC	6 cut(s)	61, 141, 157, 298, 302, 306
Cfr13I	GGNCC	3 cut(s)	62, 540, 578
CviAII	CATG	2 cut(s)	85, 140
DdeI	CTNAG	2 cut(s)	445, 504
DpnI	GATC	3 cut(s)	342, 415, 490
DpnII	GATC	3 cut(s)	340, 413, 488
DraI	TTTAAA	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	465, 608
EarI	CTCTTC	2 cut(s)	465, 608
Ecl136II	GAGCTC	1 cut(s)	275
Eco24I	GRGCYC	2 cut(s)	277, 298
Eco47I	GGWCC	2 cut(s)	540, 578
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	275
EcoRII	CCWGG	3 cut(s)	38, 182, 497
EcoT38I	GRGCYC	2 cut(s)	277, 298
FaeI	CATG	2 cut(s)	88, 143
FaiI	YATR	5 cut(s)	29, 86, 141, 174, 195
FalI	AAGNNNNNCTT	2 cut(s)	400, 432
FatI	CATG	2 cut(s)	84, 139
Fnu4HI	GCNGC	3 cut(s)	144, 382, 385
FokI	GGATG	3 cut(s)	125, 296, 427
FriOI	GRGCYC	2 cut(s)	277, 298
Fsp4HI	GCNGC	3 cut(s)	144, 382, 385
FspBI	CTAG	2 cut(s)	156, 426
GluI	GCNGC	3 cut(s)	144, 382, 385
GsuI	CTGGAG	3 cut(s)	34, 310, 535
HaeIII	GGCC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	88, 143
HindIII	AAGCTT	2 cut(s)	15, 302
HinfI	GANTC	4 cut(s)	422, 449, 479, 597
HphI	GGTGA	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	340, 421, 448
Hpy188III	TCNNGA	2 cut(s)	405, 594
HpyAV	CCTTC	3 cut(s)	352, 402, 511
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 60, 152, 293, 615
HpyF3I	CTNAG	2 cut(s)	445, 504
Hsp92II	CATG	2 cut(s)	88, 143
Kzo9I	GATC	3 cut(s)	340, 413, 488
LguI	GCTCTTC	1 cut(s)	608
LmnI	GCTCC	3 cut(s)	53, 434, 606
Lsp1109I	GCAGC	3 cut(s)	130, 393, 396
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	156, 426
MalI	GATC	3 cut(s)	342, 415, 490
MboI	GATC	3 cut(s)	340, 413, 488
MboII	GAAGA	7 cut(s)	89, 224, 327, 408, 476, 479, 482
MflI	RGATCY	2 cut(s)	413, 488
MhlI	GDGCHC	2 cut(s)	277, 298
MluCI	AATT	2 cut(s)	177, 219
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	6 cut(s)	64, 170, 181, 442, 454, 562
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	133
MspR9I	CCNGG	3 cut(s)	40, 184, 499
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	3 cut(s)	40, 184, 499
MwoI	GCNNNNNNNGC	5 cut(s)	23, 60, 152, 293, 615
NdeII	GATC	3 cut(s)	340, 413, 488
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	88, 143
NlaIV	GGNNCC	1 cut(s)	49
NmeAIII	GCCGAG	1 cut(s)	24
NspI	RCATGY	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	482
OliI	CACNNNNGTG	1 cut(s)	133
PaeI	GCATGC	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	608
PctI	GAATGC	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	449, 479, 597
PkrI	GCNGC	3 cut(s)	145, 383, 386
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	277
Psp6I	CCWGG	3 cut(s)	38, 182, 497
PspGI	CCWGG	3 cut(s)	38, 182, 497
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	3 cut(s)	62, 540, 578
PspXI	VCTCGAGB	1 cut(s)	433
PsuI	RGATCY	2 cut(s)	413, 488
RseI	CAYNNNNRTG	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	608
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	3 cut(s)	144, 382, 385
Sau3AI	GATC	3 cut(s)	340, 413, 488
Sau96I	GGNCC	3 cut(s)	62, 540, 578
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	3 cut(s)	40, 184, 499
SduI	GDGCHC	2 cut(s)	277, 298
SfaNI	GCATC	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	433
SfuI	TTCGAA	1 cut(s)	482
SinI	GGWCC	2 cut(s)	540, 578
SlaI	CTCGAG	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	1 cut(s)	143
Sse9I	AATT	2 cut(s)	177, 219
SspMI	CTAG	2 cut(s)	156, 426
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	3 cut(s)	38, 182, 497
TaaI	ACNGT	1 cut(s)	458
TaqI	TCGA	3 cut(s)	75, 434, 482
TasI	AATT	2 cut(s)	177, 219
TfiI	GAWTC	3 cut(s)	449, 479, 597
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	2 cut(s)	253, 562
TseI	GCWGC	3 cut(s)	143, 381, 384
TspDTI	ATGAA	3 cut(s)	108, 113, 429
TspRI	CASTG	2 cut(s)	253, 562
VpaK11BI	GGWCC	2 cut(s)	540, 578
XceI	RCATGY	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	2 cut(s)	156, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.