Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008386

Physical Location & Seq

Genomic Coordinates Forward (+)

148975 .. 151080

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00240.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGCAAAAATCAAGCTTACAAGGCTATGCAGAGATCCAGGCTCGGCTCCAGCTCTGCTGGCCCTGATGAGGTTGAAGACGGCATGATGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCTAGCCTCAAAACTTCTCACACAATTACCTGGGAGGAGTATAAACAGAAGCAAAAGGAAGATGAAATTAGAAAGGGAGAACTGGAGAAGGATACCGATAGAATGATGAGAGAATACAGAGCTCAACTGGATGCCGAAAGGGCTCGCAAGCTTGCCAATGGAAGAAACCACTCTAGTAGTAAGTCTGATCGCAAGAAAGATAGGAAGGATAAAGATTTAAAGAAACGCAGCAGCAGCAGAAAGAGAAAGCATTCAAGAAGGAGATCTTCAGAGTCTAGCTCCTCGAGCTCATCCTCAGATTCTTCCAGCAGTGAAGACGAAGACCAAGAATCGAGACGATCCAAGTCCAGGTCCAAGAGAACAAAGAAGGAAAAGAAGCACAGGTCAAAGACCAAACACTCGAGCAGTGGCGATAACGAGGCTGATGGTCCCGTGCCACTTTCAAGATTCTTCGGGAATGCGAAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.9

Weight (kDa)

10.1

Isoelectric Point (pI)

71.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43795 AT2G43795 AT3G59800 AT3G59800
fragaria_vesca	FvH4_1g00470
malus_domestica	MD02G1003900.v1.1 MD15G1147200.v1.1
prunus_persica	Prupe.7G267400_v2.0.a1 Prupe.7G267400_v2.0.a1
pyrus_communis	pycom02g00240 pycom15g13210
rosa_chinensis	RchiOBHm_Chr2g0084981
rosa_laevigata	RLG00000015653
rosa_multiflora	Rmu_sc0001196.1_g000004 Rmu_sc0008647.1_g000019
rosa_roxburghii	Rroxscaffold_2G00155660
rosa_rugosa	Rorug01G0457400 Rorug01G0457500
rosa_samantha	Rh2AG005400 Rh2BG006400 Rh2CG006900 Rh2DG006800
rosa_wichuraiana	Rw2G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	30, 465
AcuI	CTGAAG	1 cut(s)	384
AfiI	CCNNNNNNNGG	2 cut(s)	70, 480
AgsI	TTSAA	3 cut(s)	77, 387, 576
AjnI	CCWGG	3 cut(s)	38, 161, 479
AleI	CACNNNNGTG	1 cut(s)	112
AluBI	AGCT	6 cut(s)	17, 54, 254, 283, 411, 420
AluI	AGCT	6 cut(s)	17, 54, 254, 283, 411, 420
Alw21I	GWGCWC	2 cut(s)	256, 422
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	2 cut(s)	30, 465
Ama87I	CYCGRG	2 cut(s)	415, 532
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	4 cut(s)	122, 360, 363, 366
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	3 cut(s)	62, 483, 560
AsuHPI	GGTGA	1 cut(s)	99
AsuNHI	GCTAGC	1 cut(s)	134
AvaI	CYCGRG	2 cut(s)	415, 532
AvaII	GGWCC	2 cut(s)	483, 560
BanII	GRGCYC	3 cut(s)	256, 277, 422
BbsI	GAAGAC	3 cut(s)	84, 453, 459
Bbv12I	GWGCWC	2 cut(s)	256, 422
BbvI	GCAGC	4 cut(s)	109, 372, 375, 378
BccI	CCATC	3 cut(s)	82, 86, 551
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	3 cut(s)	40, 163, 481
BciVI	GTATCC	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	3 cut(s)	135, 306, 408
BfuI	GTATCC	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	272
BglII	AGATCT	1 cut(s)	395
BisI	GCNGC	4 cut(s)	123, 361, 364, 367
BlsI	GCNGC	4 cut(s)	124, 362, 365, 368
Bme1390I	CCNGG	3 cut(s)	40, 163, 481
Bme18I	GGWCC	2 cut(s)	483, 560
BmeT110I	CYCGRG	2 cut(s)	415, 532
BmgT120I	GGNCC	3 cut(s)	62, 483, 560
BmiI	GGNNCC	2 cut(s)	49, 562
BmrFI	CCNGG	3 cut(s)	40, 163, 481
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	138
BpiI	GAAGAC	3 cut(s)	84, 453, 459
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpmI	CTGGAG	2 cut(s)	34, 236
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 480
Bse1I	ACTGG	2 cut(s)	219, 264
BseBI	CCWGG	3 cut(s)	40, 163, 481
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	97, 268, 422
BseLI	CCNNNNNNNGG	2 cut(s)	70, 480
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	2 cut(s)	219, 264
BseRI	GAGGAG	2 cut(s)	182, 403
BseXI	GCAGC	4 cut(s)	109, 372, 375, 378
BshFI	GGCC	1 cut(s)	63
BsiHKAI	GWGCWC	2 cut(s)	256, 422
BsiHKCI	CYCGRG	2 cut(s)	415, 532
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	2 cut(s)	70, 480
BsmAI	GTCTC	1 cut(s)	460
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	546
BsmI	GAATGC	2 cut(s)	382, 595
BsnI	GGCC	1 cut(s)	63
BsoBI	CYCGRG	2 cut(s)	415, 532
Bsp1286I	GDGCHC	3 cut(s)	256, 277, 422
Bsp143I	GATC	4 cut(s)	35, 319, 395, 470
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	440
BspLI	GGNNCC	2 cut(s)	49, 562
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	30, 465
BsrI	ACTGG	2 cut(s)	219, 264
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	4 cut(s)	35, 319, 395, 470
Bst2UI	CCWGG	3 cut(s)	40, 163, 481
BstC8I	GCNNGC	6 cut(s)	61, 120, 136, 277, 281, 285
BstDEI	CTNAG	1 cut(s)	427
BstF5I	GGATG	3 cut(s)	97, 268, 422
BstKTI	GATC	4 cut(s)	38, 322, 398, 473
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	4 cut(s)	35, 319, 395, 470
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 60, 131, 272, 366, 417
BstNI	CCWGG	3 cut(s)	40, 163, 481
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	3 cut(s)	38, 161, 479
BstV1I	GCAGC	4 cut(s)	109, 372, 375, 378
BstV2I	GAAGAC	3 cut(s)	84, 453, 459
BstX2I	RGATCY	2 cut(s)	35, 395
BstYI	RGATCY	2 cut(s)	35, 395
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	97, 268, 422
BtsI	GCAGTG	2 cut(s)	448, 544
BtsIMutI	CAGTG	2 cut(s)	448, 544
Cac8I	GCNNGC	6 cut(s)	61, 120, 136, 277, 281, 285
Cfr13I	GGNCC	3 cut(s)	62, 483, 560
CviAII	CATG	2 cut(s)	85, 119
DdeI	CTNAG	1 cut(s)	427
DpnI	GATC	4 cut(s)	37, 321, 397, 472
DpnII	GATC	4 cut(s)	35, 319, 395, 470
DraI	TTTAAA	1 cut(s)	351
Ecl136II	GAGCTC	2 cut(s)	254, 420
Eco24I	GRGCYC	3 cut(s)	256, 277, 422
Eco47I	GGWCC	2 cut(s)	483, 560
Eco53kI	GAGCTC	2 cut(s)	254, 420
Eco57I	CTGAAG	1 cut(s)	384
Eco88I	CYCGRG	2 cut(s)	415, 532
EcoICRI	GAGCTC	2 cut(s)	254, 420
EcoRII	CCWGG	3 cut(s)	38, 161, 479
EcoT38I	GRGCYC	3 cut(s)	256, 277, 422
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	2 cut(s)	88, 122
FaiI	YATR	4 cut(s)	29, 86, 120, 174
FalI	AAGNNNNNCTT	2 cut(s)	382, 414
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	2 cut(s)	84, 118
Fnu4HI	GCNGC	4 cut(s)	123, 361, 364, 367
FokI	GGATG	3 cut(s)	104, 275, 409
FriOI	GRGCYC	3 cut(s)	256, 277, 422
Fsp4HI	GCNGC	4 cut(s)	123, 361, 364, 367
FspBI	CTAG	3 cut(s)	135, 306, 408
GluI	GCNGC	4 cut(s)	123, 361, 364, 367
GsuI	CTGGAG	2 cut(s)	34, 236
HaeIII	GGCC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	88, 122
HindIII	AAGCTT	2 cut(s)	15, 281
HinfI	GANTC	4 cut(s)	404, 431, 461, 579
HphI	GGTGA	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	319, 403, 430
Hpy188III	TCNNGA	4 cut(s)	387, 465, 576, 586
HpyAV	CCTTC	4 cut(s)	214, 331, 384, 493
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 60, 131, 272, 366, 417
HpyF3I	CTNAG	1 cut(s)	427
Hsp92II	CATG	2 cut(s)	88, 122
Kzo9I	GATC	4 cut(s)	35, 319, 395, 470
LmnI	GCTCC	2 cut(s)	53, 416
Lsp1109I	GCAGC	4 cut(s)	109, 372, 375, 378
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	3 cut(s)	135, 306, 408
MalI	GATC	4 cut(s)	37, 321, 397, 472
MboI	GATC	4 cut(s)	35, 319, 395, 470
MboII	GAAGA	8 cut(s)	89, 203, 306, 390, 426, 458, 464, 574
MflI	RGATCY	2 cut(s)	35, 395
MhlI	GDGCHC	3 cut(s)	256, 277, 422
MluCI	AATT	2 cut(s)	156, 198
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	6 cut(s)	64, 149, 160, 424, 436, 544
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	112
MspR9I	CCNGG	3 cut(s)	40, 163, 481
Mva1269I	GAATGC	2 cut(s)	382, 595
MvaI	CCWGG	3 cut(s)	40, 163, 481
MwoI	GCNNNNNNNGC	6 cut(s)	23, 60, 131, 272, 366, 417
NdeII	GATC	4 cut(s)	35, 319, 395, 470
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	88, 122
NlaIV	GGNNCC	2 cut(s)	49, 562
NmeAIII	GCCGAG	1 cut(s)	24
NspI	RCATGY	1 cut(s)	122
OliI	CACNNNNGTG	1 cut(s)	112
PaeI	GCATGC	1 cut(s)	122
PaeR7I	CTCGAG	2 cut(s)	415, 532
PctI	GAATGC	2 cut(s)	382, 595
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	3 cut(s)	431, 461, 579
PkrI	GCNGC	4 cut(s)	124, 362, 365, 368
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Psp124BI	GAGCTC	2 cut(s)	256, 422
Psp6I	CCWGG	3 cut(s)	38, 161, 479
PspGI	CCWGG	3 cut(s)	38, 161, 479
PspN4I	GGNNCC	2 cut(s)	49, 562
PspPI	GGNCC	3 cut(s)	62, 483, 560
PspXI	VCTCGAGB	2 cut(s)	415, 532
PsuI	RGATCY	2 cut(s)	35, 395
RseI	CAYNNNNRTG	1 cut(s)	112
SacI	GAGCTC	2 cut(s)	256, 422
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	4 cut(s)	123, 361, 364, 367
Sau3AI	GATC	4 cut(s)	35, 319, 395, 470
Sau96I	GGNCC	3 cut(s)	62, 483, 560
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	3 cut(s)	40, 163, 481
SduI	GDGCHC	3 cut(s)	256, 277, 422
SfaNI	GCATC	1 cut(s)	253
Sfr274I	CTCGAG	2 cut(s)	415, 532
SinI	GGWCC	2 cut(s)	483, 560
SlaI	CTCGAG	2 cut(s)	415, 532
SmiMI	CAYNNNNRTG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	415, 532
SmoI	CTYRAG	2 cut(s)	415, 532
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	2 cut(s)	156, 198
SspMI	CTAG	3 cut(s)	135, 306, 408
SstI	GAGCTC	2 cut(s)	256, 422
StyD4I	CCNGG	3 cut(s)	38, 161, 479
TaqI	TCGA	3 cut(s)	416, 464, 533
TasI	AATT	2 cut(s)	156, 198
TfiI	GAWTC	3 cut(s)	431, 461, 579
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	2 cut(s)	448, 544
TseI	GCWGC	4 cut(s)	122, 360, 363, 366
TspDTI	ATGAA	3 cut(s)	87, 92, 210
TspRI	CASTG	2 cut(s)	448, 544
VpaK11BI	GGWCC	2 cut(s)	483, 560
XceI	RCATGY	1 cut(s)	122
XhoI	CTCGAG	2 cut(s)	415, 532
XmnI	GAANNNNTTC	1 cut(s)	382
XspI	CTAG	3 cut(s)	135, 306, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.