AT2G43820

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006837
Physical Location & Seq
Forward (+)
18152078 .. 18153908
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43820.1

Sequence Viewer

Length: 1350 bp
ATGGAGCATAAGAGAGGACATGTATTAGCAGTGCCGTACCCAACGCAAGGACACATCACACCATTCCGCCAATTCTGCAAACGACTTCACTTCAAAGGTCTCAAAACCACTCTCGCTCTCACCACTTTCGTCTTCAACTCCATCAATCCTGACCTATCCGGTCCAATCTCCATAGCCACCATCTCCGATGGCTATGACCATGGGGGTTTCGAGACAGCTGACTCCATCGACGACTACCTCAAAGACTTTAAAACTTCCGGCTCGAAAACCATTGCAGACATCATCCAAAAACACCAGACTAGTGATAACCCCATCACTTGTATCGTCTATGATGCTTTCCTGCCTTGGGCACTTGACGTTGCTAGAGAGTTTGGTTTAGTTGCGACTCCTTTCTTTACGCAGCCTTGTGCTGTTAACTATGTTTATTATCTTTCTTACATAAACAATGGAAGCTTGCAACTTCCCATTGAGGAATTGCCTTTTCTTGAGCTCCAAGATTTGCCTTCTTTCTTCTCTGTTTCTGGCTCTTATCCTGCTTACTTTGAGATGGTGCTTCAACAGTTCATAAATTTCGAAAAAGCTGATTTCGTTCTCGTTAATAGCTTCCAAGAGTTGGAACTGCATGAGAATGAATTGTGGTCGAAAGCTTGTCCTGTGTTGACAATTGGTCCAACTATTCCATCAATTTACTTAGACCAACGTATCAAATCAGACACCGGCTATGATCTTAATCTCTTTGAATCGAAAGATGATTCCTTCTGCATTAACTGGCTCGACACAAGGCCACAAGGGTCGGTGGTGTACGTAGCATTCGGAAGCATGGCTCAGCTGACTAATGTGCAGATGGAGGAGCTTGCTTCAGCAGTAAGCAACTTCAGCTTCCTGTGGGTGGTCAGATCTTCAGAGGAGGAAAAACTCCCATCAGGGTTTCTTGAGACAGTGAATAAAGAAAAGAGCTTGGTCTTGAAATGGAGTCCTCAGCTTCAAGTTCTGTCAAACAAAGCCATCGGTTGTTTCTTGACTCACTGTGGCTGGAACTCAACCATGGAGGCTTTGACCTTCGGGGTTCCCATGGTGGCAATGCCCCAATGGACTGATCAACCGATGAACGCAAAGTACATACAAGATGTGTGGAAGGCTGGAGTTCGTGTGAAGACAGAGAAGGAGAGTGGGATTGCCAAGAGAGAGGAGATTGAGTTTAGCATTAAGGAAGTGATGGAAGGAGAGAGGAGCAAAGAGATGAAGAAGAACGTGAAGAAATGGAGAGACTTGGCTGTCAAGTCACTCAATGAAGGAGGTTCTACGGATACTAACATTGATACATTTGTATCAAGGGTTCAGAGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042545 GO:0042631 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0047251 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051179 GO:0051239 GO:0051240 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070727 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0098542 GO:0104004 GO:1900140 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901657 GO:1901659 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

449

Amino Acids

50.77

Weight (kDa)

5.21

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 265 - 413 4.3e-22 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1274
AccB7I CCANNNNNTGG 1 cut(s) 613
AciI CCGC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 3 cut(s) 843, 859, 885
AfaI GTAC 3 cut(s) 38, 803, 1118
AfiI CCNNNNNNNGG 4 cut(s) 47, 346, 613, 889
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 6 cut(s) 94, 136, 557, 740, 967, 986
AhdI GACNNNNNGTC 1 cut(s) 666
AhlI ACTAGT 1 cut(s) 299
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 4 cut(s) 104, 206, 929, 1260
AoxI GGCC 1 cut(s) 782
ApeKI GCWGC 1 cut(s) 400
ApoI RAATTY 1 cut(s) 568
AspS9I GGNCC 2 cut(s) 161, 668
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 573
AvaII GGWCC 2 cut(s) 161, 668
BaeGI GKGCMC 1 cut(s) 352
BaeI ACNNNNGTAYC 6 cut(s) 685, 718, 1311, 1311, 1344, 1344
BanII GRGCYC 1 cut(s) 492
BbsI GAAGAC 2 cut(s) 124, 1160
Bbv12I GWGCWC 1 cut(s) 492
BbvCI CCTCAGC 1 cut(s) 978
BbvI GCAGC 1 cut(s) 412
BceAI ACGGC 1 cut(s) 19
BciVI GTATCC 1 cut(s) 1300
BclI TGATCA 1 cut(s) 1096
BcoDI GTCTC 4 cut(s) 104, 206, 929, 1260
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 2 cut(s) 300, 363
BfuI GTATCC 1 cut(s) 1300
BglII AGATCT 1 cut(s) 896
BisI GCNGC 1 cut(s) 401
BlpI GCTNAGC 1 cut(s) 825
BlsI GCNGC 1 cut(s) 402
Bme18I GGWCC 2 cut(s) 161, 668
BmeRI GACNNNNNGTC 1 cut(s) 666
BmgT120I GGNCC 2 cut(s) 161, 668
BmiI GGNNCC 1 cut(s) 1068
BmsI GCATC 1 cut(s) 322
BpiI GAAGAC 2 cut(s) 124, 1160
BpmI CTGGAG 1 cut(s) 1161
Bpu10I CCTNAGC 1 cut(s) 978
Bpu1102I GCTNAGC 1 cut(s) 825
Bpu14I TTCGAA 1 cut(s) 573
BpuEI CTTGAG 2 cut(s) 506, 953
BsaAI YACGTR 1 cut(s) 805
BsaBI GATNNNNATC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 4 cut(s) 199, 344, 1044, 1071
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 4 cut(s) 1134, 1164, 1181, 1211
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 346, 613, 889
Bse118I RCCGGY 1 cut(s) 716
Bse1I ACTGG 1 cut(s) 773
Bse3DI GCAATG 2 cut(s) 270, 1086
Bse8I GATNNNNATC 1 cut(s) 729
BseDI CCNNGG 4 cut(s) 199, 344, 1044, 1071
BseGI GGATG 1 cut(s) 282
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 4 cut(s) 47, 346, 613, 889
BseMI GCAATG 2 cut(s) 270, 1086
BseMII CTCAG 2 cut(s) 839, 992
BseNI ACTGG 1 cut(s) 773
BseRI GAGGAG 4 cut(s) 863, 920, 1202, 1243
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 1 cut(s) 412
BsgI GTGCAG 1 cut(s) 860
BshFI GGCC 1 cut(s) 784
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 3 cut(s) 159, 258, 717
BslI CCNNNNNNNGG 4 cut(s) 47, 346, 613, 889
BsmAI GTCTC 4 cut(s) 104, 206, 929, 1260
BsmI GAATGC 1 cut(s) 809
BsnI GGCC 1 cut(s) 784
Bso31I GGTCTC 1 cut(s) 104
Bsp119I TTCGAA 1 cut(s) 573
Bsp1286I GDGCHC 2 cut(s) 352, 492
Bsp143I GATC 3 cut(s) 724, 896, 1096
Bsp1720I GCTNAGC 1 cut(s) 825
Bsp19I CCATGG 3 cut(s) 199, 1044, 1071
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 784
BspCNI CTCAG 2 cut(s) 838, 991
BspLI GGNNCC 1 cut(s) 1068
BspT104I TTCGAA 1 cut(s) 573
BspTNI GGTCTC 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 270, 1086
BsrFI RCCGGY 1 cut(s) 716
BsrI ACTGG 1 cut(s) 773
BssAI RCCGGY 1 cut(s) 716
BssECI CCNNGG 4 cut(s) 199, 344, 1044, 1071
BssMI GATC 3 cut(s) 724, 896, 1096
BssT1I CCWWGG 4 cut(s) 199, 344, 1044, 1071
Bst4CI ACNGT 3 cut(s) 561, 940, 1028
BstBAI YACGTR 1 cut(s) 805
BstBI TTCGAA 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 455, 855
BstDEI CTNAG 3 cut(s) 691, 825, 978
BstDSI CCRYGG 3 cut(s) 199, 1044, 1071
BstF5I GGATG 1 cut(s) 282
BstKTI GATC 3 cut(s) 727, 899, 1099
BstMAI GTCTC 4 cut(s) 104, 206, 929, 1260
BstMBI GATC 3 cut(s) 724, 896, 1096
BstMWI GCNNNNNNNGC 2 cut(s) 75, 876
BstNSI RCATGY 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 352
BstSNI TACGTA 1 cut(s) 805
BstV1I GCAGC 1 cut(s) 412
BstV2I GAAGAC 2 cut(s) 124, 1160
BstX2I RGATCY 1 cut(s) 896
BstYI RGATCY 1 cut(s) 896
BsuI GTATCC 1 cut(s) 1300
BsuRI GGCC 1 cut(s) 784
BtgI CCRYGG 3 cut(s) 199, 1044, 1071
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 3 cut(s) 36, 945, 1024
Cac8I GCNNGC 2 cut(s) 455, 855
Cfr10I RCCGGY 1 cut(s) 716
Cfr13I GGNCC 2 cut(s) 161, 668
Csp6I GTAC 3 cut(s) 37, 802, 1117
CspCI CAANNNNNGTGG 2 cut(s) 1112, 1147
CviAII CATG 6 cut(s) 20, 200, 623, 820, 1045, 1072
CviQI GTAC 3 cut(s) 37, 802, 1117
DdeI CTNAG 3 cut(s) 691, 825, 978
DpnI GATC 3 cut(s) 726, 898, 1098
DpnII GATC 3 cut(s) 724, 896, 1096
DraI TTTAAA 1 cut(s) 250
DrdI GACNNNNNNGTC 1 cut(s) 1274
DriI GACNNNNNGTC 1 cut(s) 666
DseDI GACNNNNNNGTC 1 cut(s) 1274
Eam1105I GACNNNNNGTC 1 cut(s) 666
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 490
Eco105I TACGTA 1 cut(s) 805
Eco130I CCWWGG 4 cut(s) 199, 344, 1044, 1071
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 161, 668
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 3 cut(s) 843, 859, 885
EcoICRI GAGCTC 1 cut(s) 490
EcoT14I CCWWGG 4 cut(s) 199, 344, 1044, 1071
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 4 cut(s) 199, 344, 1044, 1071
FaeI CATG 6 cut(s) 23, 203, 626, 823, 1048, 1075
FatI CATG 6 cut(s) 19, 199, 622, 819, 1044, 1071
FbaI TGATCA 1 cut(s) 1096
Fnu4HI GCNGC 1 cut(s) 401
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 1 cut(s) 401
FspBI CTAG 2 cut(s) 300, 363
GluI GCNGC 1 cut(s) 401
GsuI CTGGAG 1 cut(s) 1161
HaeIII GGCC 1 cut(s) 784
HapII CCGG 3 cut(s) 159, 258, 717
Hin1II CATG 6 cut(s) 23, 203, 626, 823, 1048, 1075
HincII GTYRAC 2 cut(s) 415, 660
HindII GTYRAC 2 cut(s) 415, 660
HindIII AAGCTT 2 cut(s) 451, 645
HinfI GANTC 6 cut(s) 221, 385, 740, 752, 973, 1021
HpaI GTTAAC 1 cut(s) 415
HpaII CCGG 3 cut(s) 159, 258, 717
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 3 cut(s) 415, 660, 802
Hpy188I TCNGA 6 cut(s) 187, 712, 815, 896, 904, 1341
Hpy188III TCNNGA 6 cut(s) 149, 211, 485, 932, 964, 1018
Hpy8I GTNNAC 3 cut(s) 415, 660, 802
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 7 cut(s) 513, 766, 1069, 1129, 1156, 1214, 1286
HpyCH4III ACNGT 3 cut(s) 561, 940, 1028
HpyCH4IV ACGT 4 cut(s) 357, 700, 804, 1251
HpyCH4V TGCA 6 cut(s) 78, 275, 457, 622, 762, 841
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 876
HpyF3I CTNAG 3 cut(s) 691, 825, 978
HpySE526I ACGT 4 cut(s) 357, 700, 804, 1251
Hsp92II CATG 6 cut(s) 23, 203, 626, 823, 1048, 1075
Ksp22I TGATCA 1 cut(s) 1096
KspAI GTTAAC 1 cut(s) 415
Kzo9I GATC 3 cut(s) 724, 896, 1096
LmnI GCTCC 4 cut(s) 4, 495, 850, 1230
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 1 cut(s) 322
MaeI CTAG 2 cut(s) 300, 363
MaeII ACGT 4 cut(s) 357, 700, 804, 1251
MaeIII GTNAC 1 cut(s) 1281
MalI GATC 3 cut(s) 726, 898, 1098
MboI GATC 3 cut(s) 724, 896, 1096
MboII GAAGA 7 cut(s) 124, 502, 891, 1165, 1255, 1258, 1267
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 1 cut(s) 896
MhlI GDGCHC 2 cut(s) 352, 492
MluCI AATT 6 cut(s) 71, 473, 568, 632, 663, 684
MlyI GAGTC 4 cut(s) 215, 379, 982, 1015
MmeI TCCRAC 2 cut(s) 594, 695
MseI TTAA 6 cut(s) 249, 414, 597, 729, 765, 1206
MslI CAYNNNNRTG 1 cut(s) 627
MspA1I CMGCKG 2 cut(s) 218, 829
MspI CCGG 3 cut(s) 159, 258, 717
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 809
MwoI GCNNNNNNNGC 2 cut(s) 75, 876
NcoI CCATGG 3 cut(s) 199, 1044, 1071
NdeII GATC 3 cut(s) 724, 896, 1096
NlaIII CATG 6 cut(s) 23, 203, 626, 823, 1048, 1075
NlaIV GGNNCC 1 cut(s) 1068
NmuCI GTSAC 1 cut(s) 1281
NspI RCATGY 1 cut(s) 23
NspV TTCGAA 1 cut(s) 573
PciI ACATGT 1 cut(s) 19
PctI GAATGC 1 cut(s) 809
PfeI GAWTC 2 cut(s) 740, 752
PflMI CCANNNNNTGG 1 cut(s) 613
PkrI GCNGC 1 cut(s) 402
PleI GAGTC 4 cut(s) 215, 379, 981, 1015
PpsI GAGTC 4 cut(s) 215, 379, 981, 1015
Ppu21I YACGTR 1 cut(s) 805
PscI ACATGT 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 1068
PspPI GGNCC 2 cut(s) 161, 668
PsrI GAACNNNNNNTAC 3 cut(s) 1100, 1132, 1320
PsuI RGATCY 1 cut(s) 896
PvuII CAGCTG 2 cut(s) 218, 829
RsaI GTAC 3 cut(s) 38, 803, 1118
RsaNI GTAC 3 cut(s) 37, 802, 1117
RseI CAYNNNNRTG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 6 cut(s) 249, 414, 597, 729, 765, 1206
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 3 cut(s) 724, 896, 1096
Sau96I GGNCC 2 cut(s) 161, 668
SchI GAGTC 4 cut(s) 215, 379, 982, 1015
SduI GDGCHC 2 cut(s) 352, 492
SfaNI GCATC 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 573
SinI GGWCC 2 cut(s) 161, 668
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 2 cut(s) 485, 932
SmoI CTYRAG 2 cut(s) 485, 932
SnaBI TACGTA 1 cut(s) 805
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 6 cut(s) 71, 473, 568, 632, 663, 684
SsiI CCGC 1 cut(s) 67
SspMI CTAG 2 cut(s) 300, 363
SstI GAGCTC 1 cut(s) 492
StyI CCWWGG 4 cut(s) 199, 344, 1044, 1071
TaaI ACNGT 3 cut(s) 561, 940, 1028
TaiI ACGT 4 cut(s) 360, 703, 807, 1254
TaqI TCGA 7 cut(s) 210, 228, 263, 573, 641, 743, 774
TasI AATT 6 cut(s) 71, 473, 568, 632, 663, 684
TatI WGTACW 1 cut(s) 1116
TfiI GAWTC 2 cut(s) 740, 752
Tru1I TTAA 6 cut(s) 249, 414, 597, 729, 765, 1206
Tru9I TTAA 6 cut(s) 249, 414, 597, 729, 765, 1206
TscAI CASTG 3 cut(s) 36, 945, 1031
TseFI GTSAC 1 cut(s) 1281
TseI GCWGC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 1281
TspDTI ATGAA 5 cut(s) 553, 645, 1121, 1256, 1305
TspGWI ACGGA 1 cut(s) 1319
TspRI CASTG 3 cut(s) 36, 945, 1031
Van91I CCANNNNNTGG 1 cut(s) 613
VpaK11BI GGWCC 2 cut(s) 161, 668
XapI RAATTY 1 cut(s) 568
XceI RCATGY 1 cut(s) 23
XspI CTAG 2 cut(s) 300, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.