Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006837

Physical Location & Seq

Genomic Coordinates Reverse (-)

27626477 .. 27627941

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G023060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGCAAGCAGTGGCTATAGAGCTCACGTTTTAGCAATTCCTTATCCAGCTCAAGGCCACATAAACCCGCTACTCCAATTCTCCAAACTCCTAGCCTCTTCTAAGGGCCTCAAAGTGACCCTAACCAATACCATCTTCATCGCCAATTCTTTGAACCTACCCAAATCGGCAGGCTCCGTCCAACTTGAGACCATATCCGATGGGTATGATGACGGCGGCTTTGCCCAAGCTGAAAGCATCGCCGCCTATATATCCCGTTTAGAAGCCGAGGGCTCCAAATCCGTAACTGAGATCATTACAAGGCACAAATCAACACCAAACCCTATTGACTGCATAATTTATGACCCCTTCTTGCCTTGGGCTTTGGATGTAGCTAAACAATTTGGTCTAGCCACTGCTGCCTTCTTTACTCAAACCTGCACCGTTAATTACACTTACTATCTTGAGCATCATCATGGACTAATTAGGAGTCCAACTTCTTCTCCTAATAAACTTCCTCTTGGATTGCATATTCTTGAGCCTCAAGATATGCCGTCCTACTTTTCAGTGCCGGGCTCGTATCCAGCTTACTGTGAGATGGTGTTGAACCAATTCTCTAATACCGACAAAGCTGATTTCATTTTCGCCAACACTTTCTACAAGTTAGAGGAAGAGGTGGTGGATTCCATGTCTCAAATTTGTCCAATGTTGACAATAGGGCCAACAATTCCATCTAAATACTTGGACAATAGCATCAGAGACGACAAGGATGACAAGCAAATGCAGGAACTTGCCTTAGGCTTGAAGGCAACCGACTTCCACTTCTTGTGGGTGGTCAGGGACTCCGAAGTGGCAAAGCTTCCGGAAAAGTTCAAAGAAGAGACGGCCGAAAAAGGCTTGTTAGTAAATTGGAGCCCTCAGCTCGAAGTGTTGTCACAAGAAGCAGTAGGGTGTTTTTTCACTCACGGTGGGTGGAATTCGACAATTGAGGCATTGAGCTTGGGAGTGCCAATGGTGTTAATGCCACAGTGGGCCGACCAGCCTACTAATTCCAAATTGGTTGAGGTTCTTTGGAAGGTTGGGGTTAGAGTAAAGGTTGATGAGAATAGTGGGGTGGAAGGAAGAGAAGAGATTGAGTTGTGCATTAGGAAAGTGATGGGGGAGATGGGGATTGAAATGAAAATGAATGCTAAAAAGTGGAGGGAGCTGGCTATTGAGGCAGTGAGCGAGGGTGGCACCTCTTATAAGAATATTGATGAATTTGTATCCAAGTTGGCAATTGCTAAGCCAGCCAGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0032787 GO:0035251 GO:0042445 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0071704 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

426

Amino Acids

47.2

Weight (kDa)

5.19

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	10 - 41	1.5e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	249 - 361	8.6e-19	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43820 AT2G43840 AT2G43840
fragaria_vesca	FvH4_1g00421
malus_domestica	MD02G1003300.v1.1 MD15G1146500.v1.1 MD15G1146700.v1.1
prunus_persica	Prupe.7G267900_v2.0.a1
pyrus_communis	pycom02g00180 pycom15g13150
rosa_chinensis	RchiOBHm_Chr2g0084921 RchiOBHm_Chr7g0212611
rosa_laevigata	RLG00000002877 RLG00000015649
rosa_multiflora	Rmu_co8326727.1_g000001 Rmu_sc0005246.1_g000002 Rmu_sc0008647.1_g000032
rosa_roxburghii	Rroxscaffold_3G00246670
rosa_rugosa	Rorug01G0457000 Rorug07G0135600
rosa_samantha	Rh2BG005900 Rh7AG267400 Rh7CG285900
rosa_wichuraiana	Rw2G000460 Rw7G023000 Rw7G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1224
Acc36I	ACCTGC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	1214
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	3 cut(s)	68, 216, 243
AcoI	YGGCCR	1 cut(s)	864
AcsI	RAATTY	3 cut(s)	675, 955, 1238
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	154, 586, 784, 853, 1154
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	4 cut(s)	182, 675, 732, 854
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	5 cut(s)	55, 106, 698, 864, 1011
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	3 cut(s)	675, 955, 1238
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	1 cut(s)	590
AspS9I	GGNCC	3 cut(s)	106, 698, 1011
AsuC2I	CCSGG	1 cut(s)	552
AxyI	CCTNAGG	1 cut(s)	775
BanI	GGYRCC	1 cut(s)	1214
BanII	GRGCYC	4 cut(s)	25, 275, 557, 896
Bbv12I	GWGCWC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	897
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	6 cut(s)	140, 194, 571, 718, 1129, 1138
BceAI	ACGGC	3 cut(s)	229, 517, 879
BciVI	GTATCC	2 cut(s)	570, 1255
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	4 cut(s)	182, 675, 732, 854
BfaI	CTAG	2 cut(s)	92, 389
BfmI	CTRYAG	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	425
BfuI	GTATCC	2 cut(s)	570, 1255
BisI	GCNGC	3 cut(s)	217, 243, 399
BlpI	GCTNAGC	1 cut(s)	1263
BlsI	GCNGC	3 cut(s)	218, 244, 400
Bme1390I	CCNGG	1 cut(s)	552
BmgT120I	GGNCC	3 cut(s)	106, 698, 1011
BmiI	GGNNCC	4 cut(s)	175, 274, 893, 1216
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	3 cut(s)	246, 457, 741
Bpu10I	CCTNAGC	1 cut(s)	897
Bpu1102I	GCTNAGC	1 cut(s)	1263
BpuEI	CTTGAG	5 cut(s)	36, 206, 464, 507, 536
BpuMI	CCSGG	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	267, 356
BsaWI	WCCGGW	1 cut(s)	841
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse21I	CCTNAGG	1 cut(s)	775
BseAI	TCCGGA	1 cut(s)	841
BseDI	CCNNGG	2 cut(s)	267, 356
BseGI	GGATG	2 cut(s)	373, 754
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	279, 911
BseX3I	CGGCCG	1 cut(s)	864
BseXI	GCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	403
Bsh1285I	CGRYCG	1 cut(s)	867
BshFI	GGCC	5 cut(s)	57, 108, 700, 866, 1013
BshNI	GGYRCC	1 cut(s)	1214
BsiEI	CGRYCG	1 cut(s)	867
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	551, 842
BslFI	GGGAC	1 cut(s)	833
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	4 cut(s)	182, 675, 732, 854
BsmBI	CGTCTC	2 cut(s)	732, 854
BsmFI	GGGAC	1 cut(s)	833
BsmI	GAATGC	1 cut(s)	1171
BsnI	GGCC	5 cut(s)	57, 108, 700, 866, 1013
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	4 cut(s)	25, 275, 557, 896
Bsp13I	TCCGGA	1 cut(s)	841
Bsp143I	GATC	1 cut(s)	291
Bsp1720I	GCTNAGC	1 cut(s)	1263
BspACI	CCGC	3 cut(s)	68, 216, 243
BspANI	GGCC	5 cut(s)	57, 108, 700, 866, 1013
BspCNI	CTCAG	2 cut(s)	280, 910
BspEI	TCCGGA	1 cut(s)	841
BspLI	GGNNCC	4 cut(s)	175, 274, 893, 1216
BspMI	ACCTGC	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	1214
BspTNI	GGTCTC	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	267, 356
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	356
Bst4CI	ACNGT	4 cut(s)	424, 572, 947, 1008
Bst6I	CTCTTC	5 cut(s)	103, 645, 852, 1096, 1101
BstC8I	GCNNGC	5 cut(s)	7, 172, 1188, 1269, 1273
BstDEI	CTNAG	5 cut(s)	102, 288, 775, 897, 1263
BstF5I	GGATG	2 cut(s)	373, 754
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	4 cut(s)	182, 675, 732, 854
BstMBI	GATC	1 cut(s)	291
BstMCI	CGRYCG	1 cut(s)	867
BstMWI	GCNNNNNNNGC	4 cut(s)	398, 1196, 1212, 1268
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	385
BstZI	CGGCCG	1 cut(s)	864
Bsu36I	CCTNAGG	1 cut(s)	775
BsuI	GTATCC	2 cut(s)	570, 1255
BsuRI	GGCC	5 cut(s)	57, 108, 700, 866, 1013
BtgZI	GCGATG	2 cut(s)	124, 223
BtsCI	GGATG	2 cut(s)	373, 754
BtsI	GCAGTG	3 cut(s)	16, 393, 1206
BtsIMutI	CAGTG	5 cut(s)	16, 393, 552, 1013, 1206
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	5 cut(s)	7, 172, 1188, 1269, 1273
Cfr13I	GGNCC	3 cut(s)	106, 698, 1011
CviAII	CATG	2 cut(s)	455, 667
DdeI	CTNAG	5 cut(s)	102, 288, 775, 897, 1263
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	864
EagI	CGGCCG	1 cut(s)	864
Eam1104I	CTCTTC	5 cut(s)	103, 645, 852, 1096, 1101
EarI	CTCTTC	5 cut(s)	103, 645, 852, 1096, 1101
Ecl136II	GAGCTC	1 cut(s)	23
EclXI	CGGCCG	1 cut(s)	864
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	4 cut(s)	25, 275, 557, 896
Eco31I	GGTCTC	1 cut(s)	182
Eco52I	CGGCCG	1 cut(s)	864
Eco53kI	GAGCTC	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	775
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	4 cut(s)	25, 275, 557, 896
ErhI	CCWWGG	1 cut(s)	356
Esp3I	CGTCTC	2 cut(s)	732, 854
FaeI	CATG	2 cut(s)	458, 670
FaqI	GGGAC	1 cut(s)	833
FatI	CATG	2 cut(s)	454, 666
FauI	CCCGC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	217, 243, 399
FokI	GGATG	2 cut(s)	380, 761
FriOI	GRGCYC	4 cut(s)	25, 275, 557, 896
Fsp4HI	GCNGC	3 cut(s)	217, 243, 399
FspBI	CTAG	2 cut(s)	92, 389
GluI	GCNGC	3 cut(s)	217, 243, 399
HaeIII	GGCC	5 cut(s)	57, 108, 700, 866, 1013
HapII	CCGG	2 cut(s)	551, 842
Hin1II	CATG	2 cut(s)	458, 670
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HindIII	AAGCTT	1 cut(s)	836
HinfI	GANTC	3 cut(s)	469, 662, 821
HpaII	CCGG	2 cut(s)	551, 842
Hpy166II	GTNNAC	1 cut(s)	690
Hpy188I	TCNGA	3 cut(s)	199, 737, 826
Hpy188III	TCNNGA	4 cut(s)	443, 515, 524, 842
Hpy8I	GTNNAC	1 cut(s)	690
HpyAV	CCTTC	5 cut(s)	358, 412, 778, 1048, 1091
HpyCH4III	ACNGT	4 cut(s)	424, 572, 947, 1008
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	5 cut(s)	333, 420, 508, 763, 1122
HpyF10VI	GCNNNNNNNGC	4 cut(s)	398, 1196, 1212, 1268
HpyF3I	CTNAG	5 cut(s)	102, 288, 775, 897, 1263
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	458, 670
Kpn2I	TCCGGA	1 cut(s)	841
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	4 cut(s)	179, 278, 891, 1183
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	3 cut(s)	246, 457, 741
MaeI	CTAG	2 cut(s)	92, 389
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	115, 283, 912
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	7 cut(s)	90, 127, 471, 662, 869, 1113, 1118
MfeI	CAATTG	2 cut(s)	963, 1257
MhlI	GDGCHC	4 cut(s)	25, 275, 557, 896
MlyI	GAGTC	2 cut(s)	478, 815
MmeI	TCCRAC	2 cut(s)	205, 497
MroI	TCCGGA	1 cut(s)	841
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	2 cut(s)	426, 998
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	2 cut(s)	551, 842
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	2 cut(s)	963, 1257
Mva1269I	GAATGC	1 cut(s)	1171
MwoI	GCNNNNNNNGC	4 cut(s)	398, 1196, 1212, 1268
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	2 cut(s)	458, 670
NlaIV	GGNNCC	4 cut(s)	175, 274, 893, 1216
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	2 cut(s)	115, 912
PctI	GAATGC	1 cut(s)	1171
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	662
PkrI	GCNGC	3 cut(s)	218, 244, 400
PleI	GAGTC	2 cut(s)	477, 815
PpsI	GAGTC	2 cut(s)	477, 815
PsiI	TTATAA	1 cut(s)	1224
Psp124BI	GAGCTC	1 cut(s)	25
PspN4I	GGNNCC	4 cut(s)	175, 274, 893, 1216
PspPI	GGNCC	3 cut(s)	106, 698, 1011
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	426, 998
SatI	GCNGC	3 cut(s)	217, 243, 399
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	3 cut(s)	106, 698, 1011
SchI	GAGTC	2 cut(s)	478, 815
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	4 cut(s)	25, 275, 557, 896
SfaNI	GCATC	3 cut(s)	246, 457, 741
SfcI	CTRYAG	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	5 cut(s)	51, 185, 443, 515, 522
SmoI	CTYRAG	5 cut(s)	51, 185, 443, 515, 522
SsiI	CCGC	3 cut(s)	68, 216, 243
SspI	AATATT	1 cut(s)	1231
SspMI	CTAG	2 cut(s)	92, 389
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	4 cut(s)	424, 572, 947, 1008
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	903, 959
TauI	GCSGC	2 cut(s)	219, 245
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	2 cut(s)	426, 998
Tru9I	TTAA	2 cut(s)	426, 998
TscAI	CASTG	5 cut(s)	16, 400, 552, 1013, 1206
TseFI	GTSAC	2 cut(s)	115, 912
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	2 cut(s)	115, 912
TspDTI	ATGAA	5 cut(s)	127, 607, 1172, 1178, 1251
TspGWI	ACGGA	2 cut(s)	166, 271
TspRI	CASTG	5 cut(s)	16, 400, 552, 1013, 1206
XapI	RAATTY	3 cut(s)	675, 955, 1238
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	2 cut(s)	92, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.