Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008647.1

Orthogroup ID

OG0006837

Physical Location & Seq

Genomic Coordinates Forward (+)

134217 .. 135680

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008647.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atgtcaagcagtggctatagagctcacgttttagcaattccttatccatctcaaggccacataaacccgctactccaattctccaaacgcctggcctcttctaagggcctcaaagtgaccctggccaataccatcttcatcgccaactctttgaacctacccaaatcggcaggctacgtccaacttgagaccatatccgatgggtatgatgacggtggctttgccctagctgaaagcatcgccgcctatctatcccgtttagaagccgagggctccaaatccatagctgagatcattacaaggcacaagtcaacaccaaaccctatcaactgcataatttatgaccccttcttgccttgggctttggatgtagctaaacaatttggtctagccactgctgccttcttcactcaaacctgcaccgttaattacacttactatcttgagcatcatcatggactaattaggaatccagcttcttctcctaataatcttcctctcggactgcatattcttgagcctcaagatatgccgtccttcttttcagtgccgggctcgtatccagcttactttgagatggtgttgaaccaattctctaataccgacaaagctgatttcattttcgccaacactttctacaagttagaggaagaggtggtggattcgatgtctcaagtttgtccaatgttgacaatagggccaacaattccatctaaatacttggacaatagcatcagagacaacaaggagtatgggattcatctcttcgagatagactcggcttgcaccgactggatcaacaccaagccagcaggctctgtcgtgtacgtagcctttggtagtatggccaatctgagtgacaagcaaatgcaggaacttgccttaggcttgaaggcaaccgacttccacttcttgtgggtggtcagggattccgaagaggcaaagcttccggaaaagttcaaagaagagatggccgaaaaaggcttgttagtgaattggagccctcagctagaagtgttgtcacacgaagcagtagggtgttttttcactcacggtgggtggaattcaacgattgaagcattaagcttgggagtgccgatggttgtaatgccacagtggaccgaccagcctactaattccaaattggttgagggtctgtggaaggttggaattagagtaacggttgatcagaatagtgggttggttggaagagaagagattgagttgtgcattaggaaagtgatgggggaggaggggattgaaatgaaaatgaatgctaaaaagtggagggagctggctattgaggcagtgagtgaggggggcacctcggataagaatattgatgaatttgtatcgaagttggtaattgctaagccagccagcgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0032787 GO:0035251 GO:0042445 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0071704 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

462

Amino Acids

51.15

Weight (kDa)

5.19

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43820 AT2G43840 AT2G43840
fragaria_vesca	FvH4_1g00421
malus_domestica	MD02G1003300.v1.1 MD15G1146500.v1.1 MD15G1146700.v1.1
prunus_persica	Prupe.7G267900_v2.0.a1
pyrus_communis	pycom02g00180 pycom15g13150
rosa_chinensis	RchiOBHm_Chr2g0084921 RchiOBHm_Chr7g0212611
rosa_laevigata	RLG00000002877 RLG00000015649
rosa_multiflora	Rmu_co8326727.1_g000001 Rmu_sc0005246.1_g000002 Rmu_sc0008647.1_g000032
rosa_roxburghii	Rroxscaffold_3G00246670
rosa_rugosa	Rorug01G0457000 Rorug07G0135600
rosa_samantha	Rh2BG005900 Rh7AG267400 Rh7CG285900
rosa_wichuraiana	Rw2G000460 Rw7G023000 Rw7G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	1322
AccIII	TCCGGA	1 cut(s)	949
AciI	CCGC	2 cut(s)	68, 243
AclWI	GGATC	1 cut(s)	803
AcoI	YGGCCR	3 cut(s)	123, 846, 972
AcsI	RAATTY	2 cut(s)	1063, 1346
AfaI	GTAC	1 cut(s)	827
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	7 cut(s)	154, 586, 892, 961, 1068, 1076, 1262
AjnI	CCWGG	2 cut(s)	90, 120
AjuI	GAANNNNNNNTTGG	4 cut(s)	119, 151, 1184, 1216
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	3 cut(s)	182, 675, 732
AlwI	GGATC	1 cut(s)	803
AlwNI	CAGNNNCTG	1 cut(s)	818
Aor13HI	TCCGGA	1 cut(s)	949
AoxI	GGCC	7 cut(s)	55, 93, 106, 123, 698, 846, 972
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	2 cut(s)	1063, 1346
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	1 cut(s)	590
AspS9I	GGNCC	3 cut(s)	106, 698, 1119
AsuC2I	CCSGG	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	1119
AxyI	CCTNAGG	1 cut(s)	883
BaeGI	GKGCMC	1 cut(s)	1325
BalI	TGGCCA	2 cut(s)	125, 848
BanI	GGYRCC	1 cut(s)	1322
BanII	GRGCYC	4 cut(s)	25, 275, 557, 1004
Bbv12I	GWGCWC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	1005
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	8 cut(s)	55, 140, 194, 571, 718, 964, 1093, 1237
BceAI	ACGGC	1 cut(s)	517
BciT130I	CCWGG	2 cut(s)	92, 122
BciVI	GTATCC	1 cut(s)	570
BclI	TGATCA	1 cut(s)	1186
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	3 cut(s)	182, 675, 732
BfaI	CTAG	3 cut(s)	227, 389, 1010
BfmI	CTRYAG	1 cut(s)	16
BfuAI	ACCTGC	1 cut(s)	425
BfuI	GTATCC	1 cut(s)	570
BisI	GCNGC	2 cut(s)	243, 399
BlpI	GCTNAGC	1 cut(s)	1371
BlsI	GCNGC	2 cut(s)	244, 400
Bme1390I	CCNGG	3 cut(s)	92, 122, 552
Bme18I	GGWCC	1 cut(s)	1119
BmgT120I	GGNCC	3 cut(s)	106, 698, 1119
BmiI	GGNNCC	3 cut(s)	274, 1001, 1324
BmrFI	CCNGG	3 cut(s)	92, 122, 552
BmsI	GCATC	3 cut(s)	246, 457, 741
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
Bpu10I	CCTNAGC	1 cut(s)	1005
Bpu1102I	GCTNAGC	1 cut(s)	1371
BpuEI	CTTGAG	6 cut(s)	36, 206, 464, 507, 536, 657
BpuMI	CCSGG	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	829
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	4 cut(s)	120, 267, 356, 1326
BsaWI	WCCGGW	1 cut(s)	949
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	797
Bse21I	CCTNAGG	1 cut(s)	883
BseAI	TCCGGA	1 cut(s)	949
BseBI	CCWGG	2 cut(s)	92, 122
BseDI	CCNNGG	4 cut(s)	120, 267, 356, 1326
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	3 cut(s)	279, 845, 1019
BseNI	ACTGG	1 cut(s)	797
BseRI	GAGGAG	1 cut(s)	1265
BseSI	GKGCMC	1 cut(s)	1325
BseXI	GCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	403
BshFI	GGCC	7 cut(s)	57, 95, 108, 125, 700, 848, 974
BshNI	GGYRCC	1 cut(s)	1322
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	551, 950
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	3 cut(s)	182, 675, 732
BsmI	GAATGC	1 cut(s)	1279
BsnI	GGCC	7 cut(s)	57, 95, 108, 125, 700, 848, 974
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	5 cut(s)	25, 275, 557, 1004, 1325
Bsp13I	TCCGGA	1 cut(s)	949
Bsp143I	GATC	3 cut(s)	291, 795, 1186
Bsp1720I	GCTNAGC	1 cut(s)	1371
BspACI	CCGC	2 cut(s)	68, 243
BspANI	GGCC	7 cut(s)	57, 95, 108, 125, 700, 848, 974
BspCNI	CTCAG	3 cut(s)	280, 846, 1018
BspEI	TCCGGA	1 cut(s)	949
BspLI	GGNNCC	3 cut(s)	274, 1001, 1324
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	803
BspT107I	GGYRCC	1 cut(s)	1322
BspTNI	GGTCTC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	797
BssECI	CCNNGG	4 cut(s)	120, 267, 356, 1326
BssMI	GATC	3 cut(s)	291, 795, 1186
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	92, 122
Bst4CI	ACNGT	5 cut(s)	215, 424, 1055, 1116, 1183
Bst6I	CTCTTC	7 cut(s)	103, 645, 770, 930, 960, 1204, 1209
BstBAI	YACGTR	1 cut(s)	829
BstC8I	GCNNGC	7 cut(s)	172, 784, 810, 814, 1296, 1377, 1381
BstDEI	CTNAG	6 cut(s)	102, 288, 854, 883, 1005, 1371
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	3 cut(s)	294, 798, 1189
BstMAI	GTCTC	3 cut(s)	182, 675, 732
BstMBI	GATC	3 cut(s)	291, 795, 1186
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 1304, 1376
BstNI	CCWGG	2 cut(s)	92, 122
BstSCI	CCNGG	3 cut(s)	90, 120, 550
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	1325
BstSNI	TACGTA	1 cut(s)	829
BstV1I	GCAGC	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	883
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	7 cut(s)	57, 95, 108, 125, 700, 848, 974
BtgZI	GCGATG	2 cut(s)	124, 223
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	3 cut(s)	16, 393, 1314
BtsIMutI	CAGTG	5 cut(s)	16, 393, 552, 1121, 1314
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	7 cut(s)	172, 784, 810, 814, 1296, 1377, 1381
CaiI	CAGNNNCTG	1 cut(s)	818
Cfr13I	GGNCC	3 cut(s)	106, 698, 1119
Csp6I	GTAC	1 cut(s)	826
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	1 cut(s)	826
DdeI	CTNAG	6 cut(s)	102, 288, 854, 883, 1005, 1371
DpnI	GATC	3 cut(s)	293, 797, 1188
DpnII	GATC	3 cut(s)	291, 795, 1186
EaeI	YGGCCR	3 cut(s)	123, 846, 972
Eam1104I	CTCTTC	7 cut(s)	103, 645, 770, 930, 960, 1204, 1209
EarI	CTCTTC	7 cut(s)	103, 645, 770, 930, 960, 1204, 1209
Ecl136II	GAGCTC	1 cut(s)	23
Eco105I	TACGTA	1 cut(s)	829
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	4 cut(s)	25, 275, 557, 1004
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	1119
Eco53kI	GAGCTC	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	883
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	1063
EcoRII	CCWGG	2 cut(s)	90, 120
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	4 cut(s)	25, 275, 557, 1004
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	1 cut(s)	458
FatI	CATG	1 cut(s)	454
FauI	CCCGC	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	1186
Fnu4HI	GCNGC	2 cut(s)	243, 399
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	4 cut(s)	25, 275, 557, 1004
Fsp4HI	GCNGC	2 cut(s)	243, 399
FspBI	CTAG	3 cut(s)	227, 389, 1010
GluI	GCNGC	2 cut(s)	243, 399
HaeIII	GGCC	7 cut(s)	57, 95, 108, 125, 700, 848, 974
HapII	CCGG	2 cut(s)	551, 950
Hin1II	CATG	1 cut(s)	458
HincII	GTYRAC	2 cut(s)	312, 690
HindII	GTYRAC	2 cut(s)	312, 690
HindIII	AAGCTT	2 cut(s)	944, 1084
HinfI	GANTC	5 cut(s)	469, 662, 757, 776, 929
HpaII	CCGG	2 cut(s)	551, 950
Hpy166II	GTNNAC	4 cut(s)	312, 690, 826, 1119
Hpy188I	TCNGA	7 cut(s)	199, 503, 737, 855, 934, 1191, 1330
Hpy188III	TCNNGA	5 cut(s)	443, 515, 524, 769, 950
Hpy8I	GTNNAC	4 cut(s)	312, 690, 826, 1119
HpyAV	CCTTC	5 cut(s)	358, 412, 547, 886, 1156
HpyCH4III	ACNGT	5 cut(s)	215, 424, 1055, 1116, 1183
HpyCH4IV	ACGT	3 cut(s)	27, 177, 828
HpyCH4V	TGCA	6 cut(s)	333, 420, 508, 786, 871, 1230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 1304, 1376
HpyF3I	CTNAG	6 cut(s)	102, 288, 854, 883, 1005, 1371
HpySE526I	ACGT	3 cut(s)	27, 177, 828
Hsp92II	CATG	1 cut(s)	458
Kpn2I	TCCGGA	1 cut(s)	949
Ksp22I	TGATCA	1 cut(s)	1186
Kzo9I	GATC	3 cut(s)	291, 795, 1186
LmnI	GCTCC	3 cut(s)	278, 999, 1291
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	3 cut(s)	246, 457, 741
MaeI	CTAG	3 cut(s)	227, 389, 1010
MaeII	ACGT	3 cut(s)	27, 177, 828
MaeIII	GTNAC	4 cut(s)	115, 857, 1020, 1177
MalI	GATC	3 cut(s)	293, 797, 1188
MboI	GATC	3 cut(s)	291, 795, 1186
MhlI	GDGCHC	5 cut(s)	25, 275, 557, 1004, 1325
MlsI	TGGCCA	2 cut(s)	125, 848
MluNI	TGGCCA	2 cut(s)	125, 848
MlyI	GAGTC	1 cut(s)	770
MmeI	TCCRAC	3 cut(s)	205, 1147, 1186
Mox20I	TGGCCA	2 cut(s)	125, 848
MroI	TCCGGA	1 cut(s)	949
MroXI	GAANNNNTTC	1 cut(s)	590
MscI	TGGCCA	2 cut(s)	125, 848
MseI	TTAA	2 cut(s)	426, 1082
MslI	CAYNNNNRTG	1 cut(s)	453
Msp20I	TGGCCA	2 cut(s)	125, 848
MspI	CCGG	2 cut(s)	551, 950
MspR9I	CCNGG	3 cut(s)	92, 122, 552
Mva1269I	GAATGC	1 cut(s)	1279
MvaI	CCWGG	2 cut(s)	92, 122
MwoI	GCNNNNNNNGC	3 cut(s)	398, 1304, 1376
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	3 cut(s)	291, 795, 1186
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	3 cut(s)	274, 1001, 1324
NmeAIII	GCCGAG	2 cut(s)	292, 758
NmuCI	GTSAC	3 cut(s)	115, 857, 1020
PctI	GAATGC	1 cut(s)	1279
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	4 cut(s)	469, 662, 757, 929
PkrI	GCNGC	2 cut(s)	244, 400
PleI	GAGTC	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	770
Ppu21I	YACGTR	1 cut(s)	829
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	90, 120
PspGI	CCWGG	2 cut(s)	90, 120
PspN4I	GGNNCC	3 cut(s)	274, 1001, 1324
PspPI	GGNCC	3 cut(s)	106, 698, 1119
PstNI	CAGNNNCTG	1 cut(s)	818
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	426, 1082
SatI	GCNGC	2 cut(s)	243, 399
Sau3AI	GATC	3 cut(s)	291, 795, 1186
Sau96I	GGNCC	3 cut(s)	106, 698, 1119
SchI	GAGTC	1 cut(s)	770
ScrFI	CCNGG	3 cut(s)	92, 122, 552
SduI	GDGCHC	5 cut(s)	25, 275, 557, 1004, 1325
SfaNI	GCATC	3 cut(s)	246, 457, 741
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	1119
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	6 cut(s)	51, 185, 443, 515, 522, 672
SmoI	CTYRAG	6 cut(s)	51, 185, 443, 515, 522, 672
SnaBI	TACGTA	1 cut(s)	829
SsiI	CCGC	2 cut(s)	68, 243
SspI	AATATT	1 cut(s)	1339
SspMI	CTAG	3 cut(s)	227, 389, 1010
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	90, 120, 550
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	5 cut(s)	215, 424, 1055, 1116, 1183
TaiI	ACGT	3 cut(s)	30, 180, 831
TaqI	TCGA	3 cut(s)	665, 768, 1355
TaqII	GACCGA	1 cut(s)	1136
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	4 cut(s)	469, 662, 757, 929
Tru1I	TTAA	2 cut(s)	426, 1082
Tru9I	TTAA	2 cut(s)	426, 1082
TscAI	CASTG	5 cut(s)	16, 400, 552, 1121, 1314
TseFI	GTSAC	3 cut(s)	115, 857, 1020
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	3 cut(s)	115, 857, 1020
TspDTI	ATGAA	6 cut(s)	127, 607, 749, 1280, 1286, 1359
TspRI	CASTG	5 cut(s)	16, 400, 552, 1121, 1314
VpaK11BI	GGWCC	1 cut(s)	1119
XapI	RAATTY	2 cut(s)	1063, 1346
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	3 cut(s)	227, 389, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.