AT2G43840

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006837
Physical Location & Seq
Forward (+)
18157529 .. 18159231
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43840.2

Sequence Viewer

Length: 1350 bp
ATGGAGAAGATGAGAGGACATGTATTAGCAGTGCCATTTCCAAGCCAAGGACACATCACCCCGATTCGCCAATTCTGCAAACGACTTCACTCCAAAGGTTTCAAAACCACTCACACTCTCACCACTTTTATCTTCAACACAATCCACCTCGACCCATCTAGTCCTATCTCCATAGCCACAATCTCCGATGGCTATGACCAGGGAGGGTTCTCATCAGCCGGTTCTGTCCCGGAGTACCTACAAAACTTCAAAACCTTCGGCTCCAAAACCGTCGCTGATATCATCCGCAAACACCAGAGTACTGATAACCCTATTACTTGTATCGTCTATGATTCTTTCATGCCTTGGGCGCTTGACCTTGCAATGGATTTTGGTCTAGCTGCGGCTCCTTTCTTCACGCAGTCTTGCGCCGTTAACTATATCAATTATCTTTCTTACATAAACAATGGTAGCTTGACACTTCCCATCAAGGATTTGCCTCTTCTTGAGCTCCAAGATTTGCCTACTTTCGTCACTCCTACTGGTTCACACCTTGCTTACTTTGAGATGGTGCTTCAACAGTTCACCAACTTCGACAAAGCTGATTTCGTACTCGTTAATTCCTTCCATGACCTCGACCTTCATGAAGAGGAGTTGTTGTCGAAAGTATGTCCTGTGTTGACAATTGGTCCAACTGTTCCATCAATGTACTTAGACCAACAGATCAAATCAGACAACGACTATGATCTGAACCTCTTTGACTTAAAAGAAGCTGCCTTATGCACTGACTGGCTAGACAAGAGGCCAGAAGGATCGGTAGTATATATAGCTTTTGGGAGCATGGCTAAACTGAGTAGTGAGCAGATGGAAGAGATTGCTTCGGCGATAAGCAACTTCAGCTACCTCTGGGTTGTCAGAGCTTCAGAGGAGTCAAAGCTCCCACCAGGGTTTCTTGAAACAGTGGATAAAGACAAGAGCTTGGTCTTGAAGTGGAGTCCTCAGCTTCAAGTTCTGTCAAACAAAGCCATCGGTTGTTTCATGACTCACTGTGGCTGGAACTCAACCATGGAGGGTTTGAGTTTAGGGGTTCCCATGGTGGCTATGCCTCAATGGACTGATCAACCAATGAATGCAAAGTATATACAAGATGTATGGAAGGTTGGGGTTCGTGTGAAAGCAGAGAAAGAAAGTGGCATTTGCAAAAGAGAGGAGATTGAGTTTAGCATCAAGGAAGTGATGGAAGGAGAGAAGAGCAAAGAGATGAAAGAGAATGCGGGAAAATGGAGAGACTTGGCTGTGAAGTCACTCAGTGAAGGAGGTTCTACAGATATCAACATTAACGAATTTGTATCAAAAATTCAAATCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042545 GO:0042631 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0047251 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051179 GO:0051239 GO:0051240 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070727 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0098542 GO:0104004 GO:1900140 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901657 GO:1901659 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

449

Amino Acids

50.33

Weight (kDa)

5.24

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 263 - 413 3.2e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 286, 383, 1253
AclWI GGATC 1 cut(s) 799
AcsI RAATTY 2 cut(s) 1322, 1335
AcuI CTGAAG 2 cut(s) 859, 885
AdeI CACNNNGTG 1 cut(s) 1289
AfaI GTAC 4 cut(s) 236, 301, 591, 689
AfiI CCNNNNNNNGG 2 cut(s) 47, 364
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 8 cut(s) 103, 136, 250, 557, 935, 967, 986, 1340
AhdI GACNNNNNGTC 1 cut(s) 666
AjnI CCWGG 2 cut(s) 198, 922
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 1 cut(s) 1260
AlwI GGATC 1 cut(s) 799
AoxI GGCC 1 cut(s) 782
ApeKI GCWGC 2 cut(s) 380, 752
ApoI RAATTY 2 cut(s) 1322, 1335
AspLEI GCGC 2 cut(s) 352, 410
AspS9I GGNCC 1 cut(s) 668
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 49, 112, 556
AvaII GGWCC 1 cut(s) 668
BanII GRGCYC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 492
BbvCI CCTCAGC 1 cut(s) 978
BbvI GCAGC 2 cut(s) 367, 739
BccI CCATC 8 cut(s) 163, 182, 473, 541, 688, 838, 1013, 1210
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 2 cut(s) 200, 924
BclI TGATCA 1 cut(s) 1096
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 1260
BfaI CTAG 3 cut(s) 159, 377, 773
BfmI CTRYAG 1 cut(s) 1302
BfoI RGCGCY 1 cut(s) 353
BisI GCNGC 3 cut(s) 381, 384, 753
BlsI GCNGC 3 cut(s) 382, 385, 754
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 3 cut(s) 200, 230, 924
Bme18I GGWCC 1 cut(s) 668
BmeRI GACNNNNNGTC 1 cut(s) 666
BmgT120I GGNCC 1 cut(s) 668
BmiI GGNNCC 3 cut(s) 262, 387, 1068
BmrFI CCNGG 3 cut(s) 200, 230, 924
BmsI GCATC 1 cut(s) 1212
Bpu10I CCTNAGC 1 cut(s) 978
BpuEI CTTGAG 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 230
BsaJI CCNNGG 6 cut(s) 46, 199, 344, 923, 1044, 1071
BsaXI ACNNNNNCTCC 4 cut(s) 623, 653, 1181, 1211
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 364
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 526, 773
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 200, 924
BseDI CCNNGG 6 cut(s) 46, 199, 344, 923, 1044, 1071
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 47, 364
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 3 cut(s) 821, 992, 1300
BseNI ACTGG 2 cut(s) 526, 773
BseRI GAGGAG 3 cut(s) 644, 920, 1202
BseXI GCAGC 2 cut(s) 367, 739
BshFI GGCC 1 cut(s) 784
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 2 cut(s) 219, 230
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 47, 364
BsmAI GTCTC 1 cut(s) 1260
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 2 cut(s) 1114, 1255
BsnI GGCC 1 cut(s) 784
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 4 cut(s) 702, 724, 791, 1096
Bsp19I CCATGG 2 cut(s) 1044, 1071
BspACI CCGC 3 cut(s) 286, 383, 1253
BspANI GGCC 1 cut(s) 784
BspCNI CTCAG 3 cut(s) 822, 991, 1299
BspHI TCATGA 2 cut(s) 622, 1017
BspLI GGNNCC 3 cut(s) 262, 387, 1068
BspPI GGATC 1 cut(s) 799
BspQI GCTCTTC 1 cut(s) 1223
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 2 cut(s) 526, 773
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 6 cut(s) 46, 199, 344, 923, 1044, 1071
BssMI GATC 4 cut(s) 702, 724, 791, 1096
BssT1I CCWWGG 4 cut(s) 46, 344, 1044, 1071
Bst2UI CCWGG 2 cut(s) 200, 924
Bst4CI ACNGT 5 cut(s) 271, 561, 676, 940, 1028
Bst6I CTCTTC 4 cut(s) 486, 621, 843, 1223
BstDEI CTNAG 4 cut(s) 691, 830, 978, 1286
BstDSI CCRYGG 2 cut(s) 1044, 1071
BstF5I GGATG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 2 cut(s) 352, 410
BstKTI GATC 4 cut(s) 705, 727, 794, 1099
BstMAI GTCTC 1 cut(s) 1260
BstMBI GATC 4 cut(s) 702, 724, 791, 1096
BstMWI GCNNNNNNNGC 3 cut(s) 75, 349, 876
BstNI CCWGG 2 cut(s) 200, 924
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 3 cut(s) 198, 228, 922
BstSFI CTRYAG 1 cut(s) 1302
BstV1I GCAGC 2 cut(s) 367, 739
BsuRI GGCC 1 cut(s) 784
BtgI CCRYGG 2 cut(s) 1044, 1071
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 5 cut(s) 36, 762, 945, 1024, 1294
CciI TCATGA 2 cut(s) 622, 1017
CfoI GCGC 2 cut(s) 352, 410
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 668
Csp6I GTAC 4 cut(s) 235, 300, 590, 688
CviAII CATG 8 cut(s) 20, 340, 608, 623, 820, 1018, 1045, 1072
CviQI GTAC 4 cut(s) 235, 300, 590, 688
DdeI CTNAG 4 cut(s) 691, 830, 978, 1286
DpnI GATC 4 cut(s) 704, 726, 793, 1098
DpnII GATC 4 cut(s) 702, 724, 791, 1096
DraIII CACNNNGTG 1 cut(s) 1289
DriI GACNNNNNGTC 1 cut(s) 666
Eam1104I CTCTTC 4 cut(s) 486, 621, 843, 1223
Eam1105I GACNNNNNGTC 1 cut(s) 666
EarI CTCTTC 4 cut(s) 486, 621, 843, 1223
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 4 cut(s) 46, 344, 1044, 1071
Eco24I GRGCYC 1 cut(s) 492
Eco32I GATATC 2 cut(s) 280, 1309
Eco47I GGWCC 1 cut(s) 668
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 2 cut(s) 859, 885
EcoICRI GAGCTC 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 198, 922
EcoRV GATATC 2 cut(s) 280, 1309
EcoT14I CCWWGG 4 cut(s) 46, 344, 1044, 1071
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 4 cut(s) 46, 344, 1044, 1071
FaeI CATG 8 cut(s) 23, 343, 611, 626, 823, 1021, 1048, 1075
FaqI GGGAC 1 cut(s) 212
FatI CATG 8 cut(s) 19, 339, 607, 622, 819, 1017, 1044, 1071
FauI CCCGC 1 cut(s) 1246
FbaI TGATCA 1 cut(s) 1096
Fnu4HI GCNGC 3 cut(s) 381, 384, 753
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 3 cut(s) 381, 384, 753
FspBI CTAG 3 cut(s) 159, 377, 773
GlaI GCGC 2 cut(s) 351, 409
GluI GCNGC 3 cut(s) 381, 384, 753
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 1 cut(s) 784
HapII CCGG 2 cut(s) 219, 230
HhaI GCGC 2 cut(s) 352, 410
Hin1II CATG 8 cut(s) 23, 343, 611, 626, 823, 1021, 1048, 1075
Hin6I GCGC 2 cut(s) 350, 408
HinP1I GCGC 2 cut(s) 350, 408
HincII GTYRAC 2 cut(s) 415, 660
HindII GTYRAC 2 cut(s) 415, 660
HinfI GANTC 5 cut(s) 64, 332, 908, 973, 1021
HpaI GTTAAC 1 cut(s) 415
HpaII CCGG 2 cut(s) 219, 230
HphI GGTGA 3 cut(s) 49, 112, 556
Hpy166II GTNNAC 4 cut(s) 415, 527, 564, 660
Hpy188I TCNGA 5 cut(s) 187, 712, 729, 896, 904
Hpy188III TCNNGA 5 cut(s) 485, 623, 932, 964, 1018
Hpy8I GTNNAC 4 cut(s) 415, 527, 564, 660
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 7 cut(s) 265, 613, 629, 782, 1129, 1214, 1286
HpyCH4III ACNGT 5 cut(s) 271, 561, 676, 940, 1028
HpyCH4V TGCA 5 cut(s) 78, 362, 762, 1112, 1179
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 349, 876
HpyF3I CTNAG 4 cut(s) 691, 830, 978, 1286
Hsp92II CATG 8 cut(s) 23, 343, 611, 626, 823, 1021, 1048, 1075
HspAI GCGC 2 cut(s) 350, 408
Ksp22I TGATCA 1 cut(s) 1096
KspAI GTTAAC 1 cut(s) 415
Kzo9I GATC 4 cut(s) 702, 724, 791, 1096
LguI GCTCTTC 1 cut(s) 1223
LmnI GCTCC 5 cut(s) 266, 391, 495, 816, 921
Lsp1109I GCAGC 2 cut(s) 367, 739
LweI GCATC 1 cut(s) 1212
MaeI CTAG 3 cut(s) 159, 377, 773
MaeIII GTNAC 2 cut(s) 511, 1281
MalI GATC 4 cut(s) 704, 726, 793, 1098
MboI GATC 4 cut(s) 702, 724, 791, 1096
MboII GAAGA 7 cut(s) 19, 124, 385, 473, 638, 860, 1240
MfeI CAATTG 1 cut(s) 663
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 6 cut(s) 71, 424, 598, 663, 1322, 1335
MlyI GAGTC 3 cut(s) 917, 982, 1015
MmeI TCCRAC 1 cut(s) 695
MseI TTAA 4 cut(s) 414, 597, 743, 1317
MspI CCGG 2 cut(s) 219, 230
MspR9I CCNGG 3 cut(s) 200, 230, 924
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 2 cut(s) 1114, 1255
MvaI CCWGG 2 cut(s) 200, 924
MwoI GCNNNNNNNGC 3 cut(s) 75, 349, 876
NciI CCSGG 1 cut(s) 230
NcoI CCATGG 2 cut(s) 1044, 1071
NdeII GATC 4 cut(s) 702, 724, 791, 1096
NlaIII CATG 8 cut(s) 23, 343, 611, 626, 823, 1021, 1048, 1075
NlaIV GGNNCC 3 cut(s) 262, 387, 1068
NmuCI GTSAC 2 cut(s) 511, 1281
NspI RCATGY 1 cut(s) 23
PagI TCATGA 2 cut(s) 622, 1017
PciI ACATGT 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 1223
PctI GAATGC 2 cut(s) 1114, 1255
PfeI GAWTC 2 cut(s) 64, 332
PfoI TCCNGGA 1 cut(s) 228
PkrI GCNGC 3 cut(s) 382, 385, 754
PleI GAGTC 3 cut(s) 916, 981, 1015
PpsI GAGTC 3 cut(s) 916, 981, 1015
PscI ACATGT 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 198, 922
PspGI CCWGG 2 cut(s) 198, 922
PspN4I GGNNCC 3 cut(s) 262, 387, 1068
PspPI GGNCC 1 cut(s) 668
RsaI GTAC 4 cut(s) 236, 301, 591, 689
RsaNI GTAC 4 cut(s) 235, 300, 590, 688
SacI GAGCTC 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 1223
SaqAI TTAA 4 cut(s) 414, 597, 743, 1317
SatI GCNGC 3 cut(s) 381, 384, 753
Sau3AI GATC 4 cut(s) 702, 724, 791, 1096
Sau96I GGNCC 1 cut(s) 668
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 3 cut(s) 917, 982, 1015
ScrFI CCNGG 3 cut(s) 200, 230, 924
SduI GDGCHC 1 cut(s) 492
SfaNI GCATC 1 cut(s) 1212
SfcI CTRYAG 1 cut(s) 1302
SinI GGWCC 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 6 cut(s) 71, 424, 598, 663, 1322, 1335
SsiI CCGC 3 cut(s) 286, 383, 1253
SspMI CTAG 3 cut(s) 159, 377, 773
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 3 cut(s) 198, 228, 922
StyI CCWWGG 4 cut(s) 46, 344, 1044, 1071
TaaI ACNGT 5 cut(s) 271, 561, 676, 940, 1028
TaqI TCGA 4 cut(s) 150, 573, 615, 641
TasI AATT 6 cut(s) 71, 424, 598, 663, 1322, 1335
TatI WGTACW 2 cut(s) 299, 687
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 2 cut(s) 64, 332
Tru1I TTAA 4 cut(s) 414, 597, 743, 1317
Tru9I TTAA 4 cut(s) 414, 597, 743, 1317
TscAI CASTG 5 cut(s) 36, 769, 945, 1031, 1294
TseFI GTSAC 2 cut(s) 511, 1281
TseI GCWGC 2 cut(s) 380, 752
Tsp45I GTSAC 2 cut(s) 511, 1281
TspDTI ATGAA 6 cut(s) 328, 611, 639, 1006, 1121, 1256
TspRI CASTG 5 cut(s) 36, 769, 945, 1031, 1294
VpaK11BI GGWCC 1 cut(s) 668
XapI RAATTY 2 cut(s) 1322, 1335
XceI RCATGY 1 cut(s) 23
XspI CTAG 3 cut(s) 159, 377, 773
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.