Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006837

Physical Location & Seq

Genomic Coordinates Reverse (-)

29061888 .. 29063350

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG285900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCAAGCAGTGGCTATAGAGCTCACGTTTTAGCAATTCCTTATCCAGCTCAAGGCCACATAAACCCGCTACTCCAATTCTCTAAATGCCTAGCCTCTTCTAAGGGCCTCAAAGTGACCCTAACCAATACCATCTTCATCGCCAACTCTTTGAACCTACCCAAATCAGCAGGCTCCGTCCAACTTGAGACCATATCCGATGGGTATGATGACGGCGGCTTTGCCCAAGCTGAAAGCATCGCCGCCTATATATCCCGTTTAGAAGCCGAGGGCTCCAAATCCGTAACTGAGATCATTACAAGGCACAAATCAACACCAAACCCTATTGACTGCATAATTTATGACGCCTTCTTGCCTTGGGCTTTGGATGTTGCTAAACAATTTGATATGCCATCCTACTTTTCAGTGCCGGGCTCGTATCCAGCTTACTGTGAGATGGTGTTGAACCAATTCTCTAATACCGACAAAGCTGATTTCATTTTCGCCAACACTTTCTACAAGTTAGAGGAAGAGGTGGTGGATTCCATGTCTCAAATTTGTCCAATGTTGACAATAGGGCCAACAATTCCATCTAAATACTTGGACAATAGCATCAGAGACGACAAGGAGTATGGGCTTCATCTCTTCGAGGTAGACTCGGTTTGCACCGACTGGCTCAACACCAAGCCAGCAGGCTCCGTCGTGTACGTATCCTTTGGTAGTATAGCCAATCTGAGTGACAAGCAAATGCAGGAACTTGCCTTAGGCTTGAAGGCAACCGACTTCCACTTCTTGTGGGTGGTCAGGGACTCCGAAGTGGCAAAGCTTCCGGAAAATTTCAAAGAAGAGACAGCCGAAAAAGGCTTGTTAGTAAATTGGAGCCCTCAGCTCGAAGTGTTGTCACACGAAGCAGTAGGGTGTTTTTTCACTCACGGTGGGTGGAATTCGACAATTGAGGCATTGAGCTTGGGACTGCCAATGGTGTTAATGCCACAGTGGGCTGACCAGCCTACTAATTCCAAATTGGTTGAGGGTCTTTGGAAGGTTGGGGTTAGAGTAAAGGTTGATGAGAATAGTGGGGTGGAAGGAAGAGAAGAGATTGAGTTGTGCATTAGGAAAGTGATGGGGGAGATGGGGATTGAAATGAAAATGAATGCTAAAAAGTGGAGGGAGCTGGCTATTGAGGCAGTAAGCGAGGGTGGCACCTCTGATAAGAATATTGATGAATTTGTATCCAAGTTGGCAATTGCTAAGCCAGCCAGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0032787 GO:0035251 GO:0042445 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0071704 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

415

Amino Acids

45.75

Weight (kDa)

4.88

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	10 - 41	3e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	222 - 350	8e-25	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43820 AT2G43840 AT2G43840
fragaria_vesca	FvH4_1g00421
malus_domestica	MD02G1003300.v1.1 MD15G1146500.v1.1 MD15G1146700.v1.1
prunus_persica	Prupe.7G267900_v2.0.a1
pyrus_communis	pycom02g00180 pycom15g13150
rosa_chinensis	RchiOBHm_Chr2g0084921 RchiOBHm_Chr7g0212611
rosa_laevigata	RLG00000002877 RLG00000015649
rosa_multiflora	Rmu_co8326727.1_g000001 Rmu_sc0005246.1_g000002 Rmu_sc0008647.1_g000032
rosa_roxburghii	Rroxscaffold_3G00246670
rosa_rugosa	Rorug01G0457000 Rorug07G0135600
rosa_samantha	Rh2BG005900 Rh7AG267400 Rh7CG285900
rosa_wichuraiana	Rw2G000460 Rw7G023000 Rw7G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1181
AccI	GTMKAC	1 cut(s)	633
AccIII	TCCGGA	1 cut(s)	808
AciI	CCGC	3 cut(s)	68, 216, 243
AcsI	RAATTY	4 cut(s)	534, 814, 922, 1205
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	1 cut(s)	686
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	154, 445, 751, 820, 1121
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	9 cut(s)	23, 50, 230, 425, 470, 805, 868, 945, 1153
AluI	AGCT	9 cut(s)	23, 50, 230, 425, 470, 805, 868, 945, 1153
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	4 cut(s)	182, 534, 591, 821
Aor13HI	TCCGGA	1 cut(s)	808
AoxI	GGCC	3 cut(s)	55, 106, 557
ApoI	RAATTY	4 cut(s)	534, 814, 922, 1205
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	2 cut(s)	106, 557
AsuC2I	CCSGG	1 cut(s)	411
AxyI	CCTNAGG	1 cut(s)	742
BanI	GGYRCC	1 cut(s)	1181
BanII	GRGCYC	4 cut(s)	25, 275, 416, 863
Bbv12I	GWGCWC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	864
BccI	CCATC	7 cut(s)	140, 194, 400, 430, 577, 1096, 1105
BceAI	ACGGC	1 cut(s)	229
BciVI	GTATCC	3 cut(s)	429, 700, 1222
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	4 cut(s)	182, 534, 591, 821
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	16
BfuI	GTATCC	3 cut(s)	429, 700, 1222
BisI	GCNGC	2 cut(s)	217, 243
BlpI	GCTNAGC	1 cut(s)	1230
BlsI	GCNGC	2 cut(s)	218, 244
Bme1390I	CCNGG	1 cut(s)	411
BmgT120I	GGNCC	2 cut(s)	106, 557
BmiI	GGNNCC	5 cut(s)	175, 274, 676, 860, 1183
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	246, 600
BplI	GAGNNNNNCTC	2 cut(s)	620, 652
Bpu10I	CCTNAGC	1 cut(s)	864
Bpu1102I	GCTNAGC	1 cut(s)	1230
BpuEI	CTTGAG	2 cut(s)	36, 206
BpuMI	CCSGG	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	688
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	267, 356
BsaWI	WCCGGW	1 cut(s)	808
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	656
Bse21I	CCTNAGG	1 cut(s)	742
BseAI	TCCGGA	1 cut(s)	808
BseDI	CCNNGG	2 cut(s)	267, 356
BseGI	GGATG	2 cut(s)	373, 392
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	3 cut(s)	279, 704, 878
BseNI	ACTGG	1 cut(s)	656
BshFI	GGCC	3 cut(s)	57, 108, 559
BshNI	GGYRCC	1 cut(s)	1181
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	410, 809
BslFI	GGGAC	2 cut(s)	800, 963
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	4 cut(s)	182, 534, 591, 821
BsmBI	CGTCTC	1 cut(s)	591
BsmFI	GGGAC	2 cut(s)	800, 963
BsmI	GAATGC	1 cut(s)	1138
BsnI	GGCC	3 cut(s)	57, 108, 559
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	4 cut(s)	25, 275, 416, 863
Bsp13I	TCCGGA	1 cut(s)	808
Bsp143I	GATC	1 cut(s)	291
Bsp1720I	GCTNAGC	1 cut(s)	1230
BspACI	CCGC	3 cut(s)	68, 216, 243
BspANI	GGCC	3 cut(s)	57, 108, 559
BspCNI	CTCAG	3 cut(s)	280, 705, 877
BspEI	TCCGGA	1 cut(s)	808
BspLI	GGNNCC	5 cut(s)	175, 274, 676, 860, 1183
BspT107I	GGYRCC	1 cut(s)	1181
BspTNI	GGTCTC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	656
BssECI	CCNNGG	2 cut(s)	267, 356
BssMI	GATC	1 cut(s)	291
BssNI	GRCGYC	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	431, 914, 975
Bst6I	CTCTTC	6 cut(s)	103, 504, 629, 819, 1063, 1068
BstACI	GRCGYC	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	688
BstC8I	GCNNGC	7 cut(s)	7, 172, 669, 673, 1155, 1236, 1240
BstDEI	CTNAG	6 cut(s)	102, 288, 713, 742, 864, 1230
BstF5I	GGATG	2 cut(s)	373, 392
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	4 cut(s)	182, 534, 591, 821
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	3 cut(s)	1163, 1179, 1235
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	16
BstSNI	TACGTA	1 cut(s)	688
Bsu36I	CCTNAGG	1 cut(s)	742
BsuI	GTATCC	3 cut(s)	429, 700, 1222
BsuRI	GGCC	3 cut(s)	57, 108, 559
BtgZI	GCGATG	2 cut(s)	124, 223
BtsCI	GGATG	2 cut(s)	373, 392
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	3 cut(s)	16, 411, 980
Cac8I	GCNNGC	7 cut(s)	7, 172, 669, 673, 1155, 1236, 1240
Cfr13I	GGNCC	2 cut(s)	106, 557
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	685
CviAII	CATG	1 cut(s)	526
CviQI	GTAC	1 cut(s)	685
DdeI	CTNAG	6 cut(s)	102, 288, 713, 742, 864, 1230
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eam1104I	CTCTTC	6 cut(s)	103, 504, 629, 819, 1063, 1068
EarI	CTCTTC	6 cut(s)	103, 504, 629, 819, 1063, 1068
Ecl136II	GAGCTC	1 cut(s)	23
Eco105I	TACGTA	1 cut(s)	688
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	4 cut(s)	25, 275, 416, 863
Eco31I	GGTCTC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	742
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	922
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	4 cut(s)	25, 275, 416, 863
ErhI	CCWWGG	1 cut(s)	356
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	1 cut(s)	529
FaqI	GGGAC	2 cut(s)	800, 963
FatI	CATG	1 cut(s)	525
FauI	CCCGC	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	2 cut(s)	217, 243
FokI	GGATG	2 cut(s)	379, 380
FriOI	GRGCYC	4 cut(s)	25, 275, 416, 863
Fsp4HI	GCNGC	2 cut(s)	217, 243
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	217, 243
HaeIII	GGCC	3 cut(s)	57, 108, 559
HapII	CCGG	2 cut(s)	410, 809
HgaI	GACGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	529
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HindIII	AAGCTT	1 cut(s)	803
HinfI	GANTC	3 cut(s)	521, 635, 788
HpaII	CCGG	2 cut(s)	410, 809
Hpy166II	GTNNAC	3 cut(s)	549, 634, 685
Hpy188I	TCNGA	5 cut(s)	199, 596, 714, 793, 1189
Hpy188III	TCNNGA	1 cut(s)	809
Hpy8I	GTNNAC	3 cut(s)	549, 634, 685
Hpy99I	CGWCG	1 cut(s)	683
HpyAV	CCTTC	4 cut(s)	358, 745, 1015, 1058
HpyCH4III	ACNGT	3 cut(s)	431, 914, 975
HpyCH4IV	ACGT	2 cut(s)	27, 687
HpyCH4V	TGCA	4 cut(s)	333, 645, 730, 1089
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1163, 1179, 1235
HpyF3I	CTNAG	6 cut(s)	102, 288, 713, 742, 864, 1230
HpySE526I	ACGT	2 cut(s)	27, 687
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	529
Kpn2I	TCCGGA	1 cut(s)	808
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	5 cut(s)	179, 278, 680, 858, 1150
LweI	GCATC	2 cut(s)	246, 600
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	2 cut(s)	27, 687
MaeIII	GTNAC	4 cut(s)	115, 283, 716, 879
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	7 cut(s)	90, 127, 521, 616, 836, 1080, 1085
MfeI	CAATTG	2 cut(s)	930, 1224
MhlI	GDGCHC	4 cut(s)	25, 275, 416, 863
MlyI	GAGTC	2 cut(s)	629, 782
MmeI	TCCRAC	1 cut(s)	205
MroI	TCCGGA	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	1 cut(s)	965
MspI	CCGG	2 cut(s)	410, 809
MspR9I	CCNGG	1 cut(s)	411
MunI	CAATTG	2 cut(s)	930, 1224
Mva1269I	GAATGC	1 cut(s)	1138
MwoI	GCNNNNNNNGC	3 cut(s)	1163, 1179, 1235
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	5 cut(s)	175, 274, 676, 860, 1183
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	3 cut(s)	115, 716, 879
PctI	GAATGC	1 cut(s)	1138
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	2 cut(s)	218, 244
PleI	GAGTC	2 cut(s)	629, 782
PpsI	GAGTC	2 cut(s)	629, 782
Ppu21I	YACGTR	1 cut(s)	688
Psp124BI	GAGCTC	1 cut(s)	25
PspN4I	GGNNCC	5 cut(s)	175, 274, 676, 860, 1183
PspPI	GGNCC	2 cut(s)	106, 557
RsaI	GTAC	1 cut(s)	686
RsaNI	GTAC	1 cut(s)	685
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	965
SatI	GCNGC	2 cut(s)	217, 243
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	2 cut(s)	106, 557
SchI	GAGTC	2 cut(s)	629, 782
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	4 cut(s)	25, 275, 416, 863
SfaNI	GCATC	2 cut(s)	246, 600
SfcI	CTRYAG	1 cut(s)	16
SmlI	CTYRAG	2 cut(s)	51, 185
SmoI	CTYRAG	2 cut(s)	51, 185
SnaBI	TACGTA	1 cut(s)	688
SsiI	CCGC	3 cut(s)	68, 216, 243
SspI	AATATT	1 cut(s)	1198
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	3 cut(s)	431, 914, 975
TaiI	ACGT	2 cut(s)	30, 690
TaqI	TCGA	3 cut(s)	627, 870, 926
TauI	GCSGC	2 cut(s)	219, 245
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	1 cut(s)	965
Tru9I	TTAA	1 cut(s)	965
TscAI	CASTG	3 cut(s)	16, 411, 980
TseFI	GTSAC	3 cut(s)	115, 716, 879
Tsp45I	GTSAC	3 cut(s)	115, 716, 879
TspDTI	ATGAA	6 cut(s)	127, 466, 608, 1139, 1145, 1218
TspGWI	ACGGA	3 cut(s)	166, 271, 667
TspRI	CASTG	3 cut(s)	16, 411, 980
XapI	RAATTY	4 cut(s)	534, 814, 922, 1205
XmiI	GTMKAC	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.