FvH4_1g00421

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
235108 .. 236952
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00421.t1

Sequence Viewer

Length: 1386 bp
ATGGCAAGCAGTGGCTACAGAGCTCACGTTTTAGCAATTCCTTATCCCGCTCAAGGCCACATAAACCCACTACTCCAATTCTCCAAACGCCTAGCCTCCTCTAAGGGCCTCAAGGTGACTCTAGCCAACACCGTCTTCATCGCCAACTCATTGAACCTACCCAAATCGGCAGGCTCCGTCCAACTTGAGACCATATCCGATGGGTATGATGACGGCGGCTTTGCCCTAGCTGAAAGCATCGCCGCCTATCTGTCCCGGTTACAAGCCGTGGGTTCCAAATCCGTGGCCGAGATCATTACAAGGCACAAGGCAACACCAAACCCTATTGACTGCATAATTTATGACCCCTTCTTGCCTTGGGCTTTGGATGTAGCCAAAGATTTTGGTCTAGCCACGGCTGCCTTCTTTACTCAAACCTGCACCGTTAATTACACTTACTATATTGAGCATCATCGTCCTGGACTGCTTAGGAGTCCAGCTTCTTGCCCTAATAATCTTCCTCTCGGACTGCATATTCTTGAGCGTCAAGATATGCCGTCCTTCTTTTCTGTCCCGGGCTCGTATCCAGCTTACTTTGAGATGGTGTTGAACCAATTCTCTAATACCGACAAAGCTGATTTCATCTTCGCCAACACTTTCTACAAGTTAGAGGAGGAGGTGGTGGATTCGATGTCTCAAGTTTGTCCAATGCTGACAATAGGGCCAACGATTCCATCTGCATACTTGGACAATAGCATCAGAGACGACAAGGATTATGGGGTTCATCTGTTCAAGACAGACTACTCGGTTTGCACCGACTGGCTCAATACCAAGCCGGCAGGCTCCGTCGTGTACGTAGCCTTTGGTAGTATAGCCAATCTAAGTGACAAGCAAATGAAGGAACTTGCCTTGGGGTTGAAGGCAACTAACTTCCACTTCTTGTGGGTGGTCAGGGATTCAGAAGAGGCAAAGCTTCCCGATAAGTTCAAAGAAGAGACGGCCGAGAAAGGGTTGTTAGTGAATTGGAGCCCTCAGCTGGAAGTGCTGTCACACAAAGCAATAGGGTGTTTTTTCACGCACGGAGGGTGGAATTCGACCATTGAAGCATTAAGCATGGGAGTGCCGATGGTTGTAATGCCACAGTGGACGGACCAGCCTACCAATTCGAAATTGGTTGAGGGTCTTTGGAAGGTTGGGGTTAGAGTGAAGGTTGATGAGAATAGTGGGTTGGTTGGGAGAGAAGAGGTTGAGTTGTGCGTTAGGAAGGTGATGGGGGAGGGAGACATGGGGATTGAAATGAAAAGGAATGCTAAGAAGTGGAGGGAGCTGGCTATTGAGGCAGTGAGTGAGGGTGGTACCTCGGATAAGAATATTGATGAATTTGTATCCAGGTTGGCCAGCGTTTGA

Protein Analysis

462

Amino Acids

50.89

Weight (kDa)

5.56

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 10 - 44 7e-07 Glycosyltransferase, N-terminal domain
UDPGT PF00201 269 - 398 2.1e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 425
Acc65I GGTACC 1 cut(s) 1334
AccB1I GGYRCC 1 cut(s) 1334
AccBSI CCGCTC 1 cut(s) 50
AciI CCGC 3 cut(s) 48, 216, 243
AcoI YGGCCR 3 cut(s) 285, 978, 1374
AcsI RAATTY 2 cut(s) 1069, 1358
AfaI GTAC 2 cut(s) 833, 1336
AfiI CCNNNNNNNGG 3 cut(s) 53, 987, 1015
AgsI TTSAA 7 cut(s) 154, 589, 772, 898, 967, 1082, 1274
AjnI CCWGG 2 cut(s) 457, 1367
AjuI GAANNNNNNNTTGG 4 cut(s) 119, 151, 1190, 1222
AluBI AGCT 8 cut(s) 23, 230, 479, 569, 614, 952, 1015, 1306
AluI AGCT 8 cut(s) 23, 230, 479, 569, 614, 952, 1015, 1306
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 5 cut(s) 182, 678, 735, 968, 1254
Ama87I CYCGRG 1 cut(s) 553
AoxI GGCC 6 cut(s) 55, 106, 285, 701, 978, 1374
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 2 cut(s) 1069, 1358
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
Asp700I GAANNNNTTC 1 cut(s) 593
Asp718I GGTACC 1 cut(s) 1334
AspS9I GGNCC 3 cut(s) 106, 701, 1129
AsuC2I CCSGG 3 cut(s) 256, 554, 555
AsuHPI GGTGA 2 cut(s) 127, 1258
AsuII TTCGAA 1 cut(s) 1145
AvaI CYCGRG 1 cut(s) 553
AvaII GGWCC 1 cut(s) 1129
BalI TGGCCA 1 cut(s) 1376
BanI GGYRCC 1 cut(s) 1334
BanII GRGCYC 3 cut(s) 25, 560, 1010
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 25
BbvCI CCTCAGC 1 cut(s) 1011
BbvI GCAGC 1 cut(s) 385
BccI CCATC 5 cut(s) 194, 574, 721, 1099, 1243
BceAI ACGGC 5 cut(s) 229, 251, 411, 520, 993
BciT130I CCWGG 2 cut(s) 459, 1369
BciVI GTATCC 2 cut(s) 573, 1375
BcnI CCSGG 3 cut(s) 256, 554, 555
BcoDI GTCTC 5 cut(s) 182, 678, 735, 968, 1254
BfaI CTAG 4 cut(s) 92, 122, 227, 389
BfmI CTRYAG 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 425
BfuI GTATCC 2 cut(s) 573, 1375
BisI GCNGC 3 cut(s) 217, 243, 399
BlsI GCNGC 3 cut(s) 218, 244, 400
Bme1390I CCNGG 5 cut(s) 256, 459, 554, 555, 1369
Bme18I GGWCC 1 cut(s) 1129
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 3 cut(s) 106, 701, 1129
BmiI GGNNCC 5 cut(s) 175, 274, 823, 1007, 1336
BmrFI CCNGG 5 cut(s) 256, 459, 554, 555, 1369
BmsI GCATC 3 cut(s) 246, 457, 744
BpiI GAAGAC 1 cut(s) 127
Bpu10I CCTNAGC 2 cut(s) 467, 1011
Bpu14I TTCGAA 1 cut(s) 1145
BpuEI CTTGAG 5 cut(s) 36, 95, 206, 539, 660
BpuMI CCSGG 3 cut(s) 256, 554, 555
BsaAI YACGTR 1 cut(s) 835
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 7 cut(s) 267, 282, 356, 393, 553, 888, 1338
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 987, 1015
Bse118I RCCGGY 1 cut(s) 814
Bse1I ACTGG 1 cut(s) 803
BseBI CCWGG 2 cut(s) 459, 1369
BseDI CCNNGG 7 cut(s) 267, 282, 356, 393, 553, 888, 1338
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 3 cut(s) 53, 987, 1015
BseMII CTCAG 1 cut(s) 1025
BseNI ACTGG 1 cut(s) 803
BseRI GAGGAG 3 cut(s) 88, 665, 668
BseX3I CGGCCG 1 cut(s) 978
BseXI GCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 403
Bsh1285I CGRYCG 1 cut(s) 981
BshFI GGCC 6 cut(s) 57, 108, 287, 703, 980, 1376
BshNI GGYRCC 1 cut(s) 1334
BsiEI CGRYCG 1 cut(s) 981
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 3 cut(s) 256, 554, 815
BslFI GGGAC 2 cut(s) 238, 536
BslI CCNNNNNNNGG 3 cut(s) 53, 987, 1015
BsmAI GTCTC 5 cut(s) 182, 678, 735, 968, 1254
BsmBI CGTCTC 2 cut(s) 735, 968
BsmFI GGGAC 2 cut(s) 238, 536
BsmI GAATGC 1 cut(s) 1291
BsnI GGCC 6 cut(s) 57, 108, 287, 703, 980, 1376
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 553
Bsp119I TTCGAA 1 cut(s) 1145
Bsp1286I GDGCHC 3 cut(s) 25, 560, 1010
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 3 cut(s) 48, 216, 243
BspANI GGCC 6 cut(s) 57, 108, 287, 703, 980, 1376
BspCNI CTCAG 1 cut(s) 1024
BspLI GGNNCC 5 cut(s) 175, 274, 823, 1007, 1336
BspMI ACCTGC 1 cut(s) 425
BspT104I TTCGAA 1 cut(s) 1145
BspT107I GGYRCC 1 cut(s) 1334
BspTNI GGTCTC 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 814
BsrI ACTGG 1 cut(s) 803
BssAI RCCGGY 1 cut(s) 814
BssECI CCNNGG 7 cut(s) 267, 282, 356, 393, 553, 888, 1338
BssMI GATC 1 cut(s) 291
BssT1I CCWWGG 2 cut(s) 356, 888
Bst2UI CCWGG 2 cut(s) 459, 1369
Bst4CI ACNGT 3 cut(s) 133, 424, 1122
Bst6I CTCTTC 3 cut(s) 936, 966, 1215
BstBAI YACGTR 1 cut(s) 835
BstBI TTCGAA 1 cut(s) 1145
BstC8I GCNNGC 6 cut(s) 7, 172, 816, 820, 1308, 1378
BstDEI CTNAG 5 cut(s) 102, 467, 860, 1011, 1290
BstDSI CCRYGG 3 cut(s) 267, 282, 393
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 5 cut(s) 182, 678, 735, 968, 1254
BstMBI GATC 1 cut(s) 291
BstMCI CGRYCG 1 cut(s) 981
BstMWI GCNNNNNNNGC 3 cut(s) 398, 1021, 1316
BstNI CCWGG 2 cut(s) 459, 1369
BstSCI CCNGG 5 cut(s) 254, 457, 552, 553, 1367
BstSFI CTRYAG 1 cut(s) 16
BstSNI TACGTA 1 cut(s) 835
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 283
BstZI CGGCCG 1 cut(s) 978
BsuI GTATCC 2 cut(s) 573, 1375
BsuRI GGCC 6 cut(s) 57, 108, 287, 703, 980, 1376
BtgI CCRYGG 3 cut(s) 267, 282, 393
BtgZI GCGATG 2 cut(s) 124, 223
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 2 cut(s) 16, 1326
BtsIMutI CAGTG 3 cut(s) 16, 1127, 1326
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 6 cut(s) 7, 172, 816, 820, 1308, 1378
Cfr10I RCCGGY 1 cut(s) 814
Cfr13I GGNCC 3 cut(s) 106, 701, 1129
Cfr9I CCCGGG 1 cut(s) 553
CseI GACGC 1 cut(s) 512
Csp6I GTAC 2 cut(s) 832, 1335
CviAII CATG 2 cut(s) 1093, 1264
CviQI GTAC 2 cut(s) 832, 1335
DdeI CTNAG 5 cut(s) 102, 467, 860, 1011, 1290
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 3 cut(s) 285, 978, 1374
EagI CGGCCG 1 cut(s) 978
Eam1104I CTCTTC 3 cut(s) 936, 966, 1215
EarI CTCTTC 3 cut(s) 936, 966, 1215
Ecl136II GAGCTC 1 cut(s) 23
EclXI CGGCCG 1 cut(s) 978
Eco105I TACGTA 1 cut(s) 835
Eco130I CCWWGG 2 cut(s) 356, 888
Eco24I GRGCYC 3 cut(s) 25, 560, 1010
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 1129
Eco52I CGGCCG 1 cut(s) 978
Eco53kI GAGCTC 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 553
EcoICRI GAGCTC 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 1069
EcoRII CCWGG 2 cut(s) 457, 1367
EcoT14I CCWWGG 2 cut(s) 356, 888
EcoT38I GRGCYC 3 cut(s) 25, 560, 1010
ErhI CCWWGG 2 cut(s) 356, 888
Esp3I CGTCTC 2 cut(s) 735, 968
FaeI CATG 2 cut(s) 1096, 1267
FaqI GGGAC 2 cut(s) 238, 536
FatI CATG 2 cut(s) 1092, 1263
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 3 cut(s) 217, 243, 399
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 3 cut(s) 25, 560, 1010
Fsp4HI GCNGC 3 cut(s) 217, 243, 399
FspBI CTAG 4 cut(s) 92, 122, 227, 389
GluI GCNGC 3 cut(s) 217, 243, 399
HaeIII GGCC 6 cut(s) 57, 108, 287, 703, 980, 1376
HapII CCGG 3 cut(s) 256, 554, 815
HgaI GACGC 1 cut(s) 512
Hin1II CATG 2 cut(s) 1096, 1267
HindIII AAGCTT 1 cut(s) 950
HinfI GANTC 5 cut(s) 118, 472, 665, 709, 935
HpaII CCGG 3 cut(s) 256, 554, 815
HphI GGTGA 2 cut(s) 127, 1258
Hpy166II GTNNAC 2 cut(s) 832, 1125
Hpy188I TCNGA 5 cut(s) 199, 506, 740, 940, 1342
Hpy188III TCNNGA 4 cut(s) 518, 527, 772, 956
Hpy8I GTNNAC 2 cut(s) 832, 1125
Hpy99I CGWCG 1 cut(s) 830
HpyAV CCTTC 8 cut(s) 358, 412, 550, 871, 892, 1162, 1180, 1237
HpyCH4III ACNGT 3 cut(s) 133, 424, 1122
HpyCH4IV ACGT 2 cut(s) 27, 834
HpyCH4V TGCA 5 cut(s) 333, 420, 511, 719, 792
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 1021, 1316
HpyF3I CTNAG 5 cut(s) 102, 467, 860, 1011, 1290
HpySE526I ACGT 2 cut(s) 27, 834
Hsp92II CATG 2 cut(s) 1096, 1267
KpnI GGTACC 1 cut(s) 1338
KroI GCCGGC 1 cut(s) 814
KroNI GCCGGC 1 cut(s) 816
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 4 cut(s) 179, 827, 1005, 1303
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 3 cut(s) 246, 457, 744
MaeI CTAG 4 cut(s) 92, 122, 227, 389
MaeII ACGT 2 cut(s) 27, 834
MaeIII GTNAC 4 cut(s) 115, 258, 863, 1026
MalI GATC 1 cut(s) 293
MbiI CCGCTC 1 cut(s) 50
MboI GATC 1 cut(s) 291
MboII GAAGA 6 cut(s) 127, 488, 616, 953, 983, 1232
MhlI GDGCHC 3 cut(s) 25, 560, 1010
MlsI TGGCCA 1 cut(s) 1376
MluNI TGGCCA 1 cut(s) 1376
MlyI GAGTC 2 cut(s) 112, 481
MmeI TCCRAC 1 cut(s) 205
Mox20I TGGCCA 1 cut(s) 1376
MroNI GCCGGC 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 593
MscI TGGCCA 1 cut(s) 1376
MseI TTAA 2 cut(s) 426, 1088
MslI CAYNNNNRTG 1 cut(s) 1097
Msp20I TGGCCA 1 cut(s) 1376
MspA1I CMGCKG 1 cut(s) 1015
MspI CCGG 3 cut(s) 256, 554, 815
MspR9I CCNGG 5 cut(s) 256, 459, 554, 555, 1369
Mva1269I GAATGC 1 cut(s) 1291
MvaI CCWGG 2 cut(s) 459, 1369
MwoI GCNNNNNNNGC 3 cut(s) 398, 1021, 1316
NaeI GCCGGC 1 cut(s) 816
NciI CCSGG 3 cut(s) 256, 554, 555
NdeII GATC 1 cut(s) 291
NgoMIV GCCGGC 1 cut(s) 814
NlaIII CATG 2 cut(s) 1096, 1267
NlaIV GGNNCC 5 cut(s) 175, 274, 823, 1007, 1336
NmeAIII GCCGAG 2 cut(s) 313, 1006
NmuCI GTSAC 3 cut(s) 115, 863, 1026
NspV TTCGAA 1 cut(s) 1145
PctI GAATGC 1 cut(s) 1291
PdiI GCCGGC 1 cut(s) 816
PdmI GAANNNNTTC 1 cut(s) 593
PfeI GAWTC 3 cut(s) 665, 709, 935
PfoI TCCNGGA 1 cut(s) 457
PkrI GCNGC 3 cut(s) 218, 244, 400
PleI GAGTC 2 cut(s) 112, 480
PpsI GAGTC 2 cut(s) 112, 480
Ppu21I YACGTR 1 cut(s) 835
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 457, 1367
PspGI CCWGG 2 cut(s) 457, 1367
PspN4I GGNNCC 5 cut(s) 175, 274, 823, 1007, 1336
PspPI GGNCC 3 cut(s) 106, 701, 1129
PvuII CAGCTG 1 cut(s) 1015
RsaI GTAC 2 cut(s) 833, 1336
RsaNI GTAC 2 cut(s) 832, 1335
RseI CAYNNNNRTG 1 cut(s) 1097
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 426, 1088
SatI GCNGC 3 cut(s) 217, 243, 399
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 3 cut(s) 106, 701, 1129
SchI GAGTC 2 cut(s) 112, 481
ScrFI CCNGG 5 cut(s) 256, 459, 554, 555, 1369
SduI GDGCHC 3 cut(s) 25, 560, 1010
SfaNI GCATC 3 cut(s) 246, 457, 744
SfcI CTRYAG 1 cut(s) 16
SfuI TTCGAA 1 cut(s) 1145
SinI GGWCC 1 cut(s) 1129
SmaI CCCGGG 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 1097
SmlI CTYRAG 5 cut(s) 51, 110, 185, 518, 675
SmoI CTYRAG 5 cut(s) 51, 110, 185, 518, 675
SnaBI TACGTA 1 cut(s) 835
SsiI CCGC 3 cut(s) 48, 216, 243
SspI AATATT 1 cut(s) 1351
SspMI CTAG 4 cut(s) 92, 122, 227, 389
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 5 cut(s) 254, 457, 552, 553, 1367
StyI CCWWGG 2 cut(s) 356, 888
TaaI ACNGT 3 cut(s) 133, 424, 1122
TaiI ACGT 2 cut(s) 30, 837
TaqI TCGA 3 cut(s) 668, 1073, 1145
TauI GCSGC 2 cut(s) 219, 245
TfiI GAWTC 3 cut(s) 665, 709, 935
Tru1I TTAA 2 cut(s) 426, 1088
Tru9I TTAA 2 cut(s) 426, 1088
TscAI CASTG 3 cut(s) 16, 1127, 1326
TseFI GTSAC 3 cut(s) 115, 863, 1026
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 3 cut(s) 115, 863, 1026
TspDTI ATGAA 6 cut(s) 127, 610, 752, 890, 1292, 1371
TspGWI ACGGA 5 cut(s) 166, 271, 814, 1074, 1142
TspMI CCCGGG 1 cut(s) 553
TspRI CASTG 3 cut(s) 16, 1127, 1326
VpaK11BI GGWCC 1 cut(s) 1129
XapI RAATTY 2 cut(s) 1069, 1358
XcmI CCANNNNNNNNNTGG 1 cut(s) 1147
XmaI CCCGGG 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 593
XspI CTAG 4 cut(s) 92, 122, 227, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.