Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005246.1

Orthogroup ID

OG0006837

Physical Location & Seq

Genomic Coordinates Reverse (-)

4506 .. 5687

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005246.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgtatgacgagttcttgccttgggctttggatgtagctaaacaatttggtctagccactgctgccttttttactcaaacctgcaccgttaattacacttactatcttgagcatcatcatggactaattaggagtccagcttcttctcctaataaacttcctcttggattgcatattcttgagactcaagatatgccgtcctacttttcagtgccgggctcgtatccagcttactgtgagatggtgttgaaccaattctctaacaccgacaaagctgatttcattttcgccaacactttctacaagttagaggaagaggtggtggattcgatgtctcaaatttgtccaatgttgacaatagggccaaaaattccatctaaatacttggacaatagcatcagagaccacaaggagtatggcattcatctcttcgagatagatcgagactcggtttgcaccgactggctcaacaccaagctagcaggctccgtcgtgtacgtaacctttggtagtatagccaatctgagtgacaagaaaatgcaagaatttgccttgggcttgaaggcaactgacttccacttcttgtgggtggtcagggactctgaagaggcaaagcttccggaaaagttcaaagaagagatgggcgaaaaaggcttgttagtaaattggagccctcagctcgaagtgttgtcacacgaagcaggtatttggaaggttggggttagagtaaacgttaatgagaatagtggggtggaaggaagagaagagatcgaattgtgcattaggaaagtgatgggggagatagggatagaaatgaaaatgaatgctaaaaagtggagggagctggctattgaggcagtgagtgagggtggcacctctgataagaatattgatgaatttgtatccaagttggcaattgctaagccagccagcgatttattttcacatgtgcagttgatcggatcagtgtactgttgtttactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0032787 GO:0035251 GO:0042445 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0071704 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

328

Amino Acids

37.02

Weight (kDa)

5.08

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43820 AT2G43840 AT2G43840
fragaria_vesca	FvH4_1g00421
malus_domestica	MD02G1003300.v1.1 MD15G1146500.v1.1 MD15G1146700.v1.1
prunus_persica	Prupe.7G267900_v2.0.a1
pyrus_communis	pycom02g00180 pycom15g13150
rosa_chinensis	RchiOBHm_Chr2g0084921 RchiOBHm_Chr7g0212611
rosa_laevigata	RLG00000002877 RLG00000015649
rosa_multiflora	Rmu_co8326727.1_g000001 Rmu_sc0005246.1_g000002 Rmu_sc0008647.1_g000032
rosa_roxburghii	Rroxscaffold_3G00246670
rosa_rugosa	Rorug01G0457000 Rorug07G0135600
rosa_samantha	Rh2BG005900 Rh7AG267400 Rh7CG285900
rosa_wichuraiana	Rw2G000460 Rw7G023000 Rw7G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	89, 692
AccB1I	GGYRCC	1 cut(s)	872
AccIII	TCCGGA	1 cut(s)	619
AclI	AACGTT	1 cut(s)	732
AclWI	GGATC	1 cut(s)	970
AcsI	RAATTY	4 cut(s)	339, 369, 545, 896
AcuI	CTGAAG	1 cut(s)	624
AfaI	GTAC	2 cut(s)	497, 971
AflIII	ACRYGT	1 cut(s)	946
AgsI	TTSAA	3 cut(s)	250, 562, 631
AluBI	AGCT	8 cut(s)	38, 140, 230, 275, 478, 616, 679, 844
AluI	AGCT	8 cut(s)	38, 140, 230, 275, 478, 616, 679, 844
Alw26I	GTCTC	4 cut(s)	176, 339, 396, 438
AlwI	GGATC	1 cut(s)	970
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	4 cut(s)	339, 369, 545, 896
Asp700I	GAANNNNTTC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	216
AsuNHI	GCTAGC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	872
BanII	GRGCYC	2 cut(s)	221, 674
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	4 cut(s)	235, 382, 634, 787
BceAI	ACGGC	1 cut(s)	181
BciVI	GTATCC	2 cut(s)	234, 913
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	4 cut(s)	176, 339, 396, 438
BfaI	CTAG	2 cut(s)	53, 479
BfuAI	ACCTGC	2 cut(s)	89, 692
BfuI	GTATCC	2 cut(s)	234, 913
BisI	GCNGC	1 cut(s)	63
BlpI	GCTNAGC	1 cut(s)	921
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	3 cut(s)	487, 671, 874
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	121, 405
BmtI	GCTAGC	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	675
Bpu1102I	GCTNAGC	1 cut(s)	921
BpuEI	CTTGAG	3 cut(s)	128, 171, 200
BpuMI	CCSGG	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	499
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	20, 552
BsaWI	WCCGGW	1 cut(s)	619
Bse1I	ACTGG	1 cut(s)	467
BseAI	TCCGGA	1 cut(s)	619
BseDI	CCNNGG	2 cut(s)	20, 552
BseGI	GGATG	1 cut(s)	37
BseMII	CTCAG	2 cut(s)	515, 689
BseNI	ACTGG	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	49
BsgI	GTGCAG	2 cut(s)	67, 971
BshFI	GGCC	1 cut(s)	364
BshNI	GGYRCC	1 cut(s)	872
BsiSI	CCGG	2 cut(s)	215, 620
BslFI	GGGAC	1 cut(s)	611
BsmAI	GTCTC	4 cut(s)	176, 339, 396, 438
BsmFI	GGGAC	1 cut(s)	611
BsmI	GAATGC	2 cut(s)	420, 829
BsnI	GGCC	1 cut(s)	364
Bso31I	GGTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	2 cut(s)	221, 674
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	4 cut(s)	439, 768, 957, 962
Bsp1720I	GCTNAGC	1 cut(s)	921
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	2 cut(s)	516, 688
BspEI	TCCGGA	1 cut(s)	619
BspLI	GGNNCC	3 cut(s)	487, 671, 874
BspMI	ACCTGC	2 cut(s)	89, 692
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	970
BspT107I	GGYRCC	1 cut(s)	872
BspTNI	GGTCTC	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	20, 552
BssMI	GATC	4 cut(s)	439, 768, 957, 962
BssT1I	CCWWGG	2 cut(s)	20, 552
Bst4CI	ACNGT	3 cut(s)	88, 236, 974
Bst6I	CTCTTC	6 cut(s)	309, 434, 600, 630, 754, 759
BstBAI	YACGTR	1 cut(s)	499
BstC8I	GCNNGC	5 cut(s)	480, 484, 846, 927, 931
BstDEI	CTNAG	3 cut(s)	524, 675, 921
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	4 cut(s)	442, 771, 960, 965
BstMAI	GTCTC	4 cut(s)	176, 339, 396, 438
BstMBI	GATC	4 cut(s)	439, 768, 957, 962
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 651, 854, 926
BstNSI	RCATGY	1 cut(s)	950
BstSCI	CCNGG	1 cut(s)	214
BstSNI	TACGTA	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	49
BsuI	GTATCC	2 cut(s)	234, 913
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	2 cut(s)	57, 864
BtsIMutI	CAGTG	4 cut(s)	57, 216, 864, 972
BveI	ACCTGC	2 cut(s)	89, 692
Cac8I	GCNNGC	5 cut(s)	480, 484, 846, 927, 931
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	496, 970
CviAII	CATG	2 cut(s)	119, 947
CviQI	GTAC	2 cut(s)	496, 970
DdeI	CTNAG	3 cut(s)	524, 675, 921
DpnI	GATC	4 cut(s)	441, 770, 959, 964
DpnII	GATC	4 cut(s)	439, 768, 957, 962
Eam1104I	CTCTTC	6 cut(s)	309, 434, 600, 630, 754, 759
EarI	CTCTTC	6 cut(s)	309, 434, 600, 630, 754, 759
Eco105I	TACGTA	1 cut(s)	499
Eco130I	CCWWGG	2 cut(s)	20, 552
Eco24I	GRGCYC	2 cut(s)	221, 674
Eco31I	GGTCTC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	624
EcoT14I	CCWWGG	2 cut(s)	20, 552
EcoT38I	GRGCYC	2 cut(s)	221, 674
ErhI	CCWWGG	2 cut(s)	20, 552
FaeI	CATG	2 cut(s)	122, 950
FaiI	YATR	8 cut(s)	6, 120, 174, 194, 417, 515, 948, 985
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	2 cut(s)	118, 946
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	2 cut(s)	221, 674
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	53, 479
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	2 cut(s)	215, 620
Hin1II	CATG	2 cut(s)	122, 950
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	5 cut(s)	133, 184, 326, 446, 599
HpaII	CCGG	2 cut(s)	215, 620
Hpy166II	GTNNAC	5 cut(s)	354, 496, 730, 970, 980
Hpy188I	TCNGA	5 cut(s)	401, 525, 604, 880, 962
Hpy188III	TCNNGA	6 cut(s)	107, 179, 188, 433, 443, 620
Hpy8I	GTNNAC	5 cut(s)	354, 496, 730, 970, 980
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	3 cut(s)	556, 706, 749
HpyCH4III	ACNGT	3 cut(s)	88, 236, 974
HpyCH4IV	ACGT	2 cut(s)	498, 732
HpyCH4V	TGCA	6 cut(s)	84, 172, 456, 541, 780, 952
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 651, 854, 926
HpyF3I	CTNAG	3 cut(s)	524, 675, 921
HpySE526I	ACGT	2 cut(s)	498, 732
Hsp92II	CATG	2 cut(s)	122, 950
Kpn2I	TCCGGA	1 cut(s)	619
Kzo9I	GATC	4 cut(s)	439, 768, 957, 962
LmnI	GCTCC	3 cut(s)	491, 669, 841
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	121, 405
MaeI	CTAG	2 cut(s)	53, 479
MaeII	ACGT	2 cut(s)	498, 732
MaeIII	GTNAC	3 cut(s)	499, 527, 690
MalI	GATC	4 cut(s)	441, 770, 959, 964
MboI	GATC	4 cut(s)	439, 768, 957, 962
MboII	GAAGA	7 cut(s)	135, 326, 421, 617, 647, 771, 776
MfeI	CAATTG	1 cut(s)	915
MhlI	GDGCHC	2 cut(s)	221, 674
MlyI	GAGTC	4 cut(s)	142, 178, 440, 593
MnlI	CCTC	9 cut(s)	171, 304, 310, 601, 684, 831, 847, 859, 886
MroI	TCCGGA	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	2 cut(s)	90, 735
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	2 cut(s)	215, 620
MspR9I	CCNGG	1 cut(s)	216
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	2 cut(s)	420, 829
MwoI	GCNNNNNNNGC	4 cut(s)	62, 651, 854, 926
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	4 cut(s)	439, 768, 957, 962
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	2 cut(s)	122, 950
NlaIV	GGNNCC	3 cut(s)	487, 671, 874
NmuCI	GTSAC	2 cut(s)	527, 690
NspI	RCATGY	1 cut(s)	950
PciI	ACATGT	1 cut(s)	946
PctI	GAATGC	2 cut(s)	420, 829
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	4 cut(s)	141, 178, 440, 593
PpsI	GAGTC	4 cut(s)	141, 178, 440, 593
Ppu21I	YACGTR	1 cut(s)	499
PscI	ACATGT	1 cut(s)	946
Psp1406I	AACGTT	1 cut(s)	732
PspN4I	GGNNCC	3 cut(s)	487, 671, 874
PspPI	GGNCC	1 cut(s)	362
PsrI	GAACNNNNNNTAC	1 cut(s)	28
RsaI	GTAC	2 cut(s)	497, 971
RsaNI	GTAC	2 cut(s)	496, 970
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	90, 735
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	439, 768, 957, 962
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	4 cut(s)	142, 178, 440, 593
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	2 cut(s)	221, 674
SfaNI	GCATC	2 cut(s)	121, 405
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	3 cut(s)	107, 179, 186
SmoI	CTYRAG	3 cut(s)	107, 179, 186
SnaBI	TACGTA	1 cut(s)	499
SspI	AATATT	1 cut(s)	889
SspMI	CTAG	2 cut(s)	53, 479
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	2 cut(s)	20, 552
TaaI	ACNGT	3 cut(s)	88, 236, 974
TaiI	ACGT	2 cut(s)	501, 735
TaqI	TCGA	5 cut(s)	329, 432, 442, 681, 771
TatI	WGTACW	1 cut(s)	969
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	90, 735
Tru9I	TTAA	2 cut(s)	90, 735
TscAI	CASTG	4 cut(s)	64, 216, 864, 972
TseFI	GTSAC	2 cut(s)	527, 690
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	2 cut(s)	527, 690
TspDTI	ATGAA	5 cut(s)	271, 413, 830, 836, 909
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	4 cut(s)	64, 216, 864, 972
XapI	RAATTY	4 cut(s)	339, 369, 545, 896
XceI	RCATGY	1 cut(s)	950
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	53, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.