Rroxscaffold_3G00246670

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
39868482 .. 39870302
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246670.1

Sequence Viewer

Length: 1389 bp
ATGGCAAGCAGTGGCTATAGAGCTCACGTTTTAGCAATTCCTTATCCAGCTCAAGGCCACATAAACCCGCTACTCCAATTCTCCAAACGCCTAGCCTCTTCTCAGGGCCTCAAAGTGACCCTAGCCAATACCATCTTCATCGCCAACTCTTTGAACCTACCCAAATCGGTAGGCTCCGTCCAACTTGAGACCATATCCGATGGGTATGATGATGGCGGCTTTGCCCGAGCTGAAAGCATAGCCGCCTATCTATCCCGTTTAGAAGCCGAGGGCTCCAAATCTGTAGCTGAGATCATTACAAGGCACAAGTCAACACCAAACCCTATTGACTGCATAATTTATAACGCCTTCTTGCCTTGGGCTTTGGATGTAGCTAAACAATTTGGTCTAGCCACTGCTGCCTTCTTTACTCAAGCCTGCACCGTTAATTACACTTACTATCTTGAGCATCATCATGGACTAATTAGGAGTCCAGCTTCTTCTCCTAATAAACTTCCTCTCGGATTGCATATTCTTGAGCCTCAAGATATGCCGTCCTACTTTTCAGTGCCGGGCTCGTATCCAGCTTACTGTGAGATGGTGTTGAACCAATTCTCTAATACCGACAAAGCTGATTTCATTTTCGTCAACACTTTCTACAAGTTAGAGGAAGAGGTGGTGGATTCGATGTCTCAAATTTGTCCAATGTTGACAATAGGGCCAACAATTCCATCTAAATACTTGGACAATAGCATCAGAGACGACAAGGAGTATGGGCTTCATCTCTTCGAGGTAGACTCGGTTTGCACCGACTGGCTCAACACTAAGCCAGCAGGCTCCGTCGTGTACGTATCCTTTGGTAGTATAGCCAATCTGAGTGACAAGCAAATGCAGGAACTTGCCTTAGGCTTGAAGGCAACCGACTTCCACTTCTTGTGGGTGGTCAGGGACTCCGAAGAGGCAAAGCTTCCGAAAAAGTTCAAAGAAGAGACGGCCGAAAAAGGCTTGTTAGTAAATTGGAGCCCTCAGCTCGAAGTGTTGTCACACGAAGCAGTAGGGTGTTTTTTCACTCACGGTGGGTGGAATTCGACACTTGAGGCATTGAGCTTGGGAGTTCCGATGGTTGTAATGCCACAGTGGGCCGACCAGCCTCCTAATTCCAAATTGGTTGAGGGTCTTTGGAAGGTTGGGGTTAGAGTAAAGGTTGATGAGAATAGTGGGGTGGAAGGAAGAGAAGAGATTGAGTTGTGCATTAGGAAAGTGATGGGGGAGATGGGGATTGAAATGAAAATGAATGCTAAAAAGTGGAGGGAGCTGGCTATTGAGGCAGTGAGCGAGGGTGGCACCTCGGATAAGAATATTGATGAATTTGTATCCAAGTTGGCAATTGCTAAGCCAGCCAGCGTTTGA

Protein Analysis

462

Amino Acids

51.0

Weight (kDa)

5.33

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 10 - 44 7.3e-07 Glycosyltransferase, N-terminal domain
UDPGT PF00201 269 - 397 3.9e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AccB1I GGYRCC 1 cut(s) 1322
AccI GTMKAC 1 cut(s) 774
AciI CCGC 3 cut(s) 68, 216, 243
AcoI YGGCCR 1 cut(s) 972
AcsI RAATTY 3 cut(s) 675, 1063, 1346
AfaI GTAC 1 cut(s) 827
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 5 cut(s) 154, 586, 892, 961, 1262
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 4 cut(s) 182, 675, 732, 962
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 5 cut(s) 55, 106, 698, 972, 1119
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 3 cut(s) 675, 1063, 1346
Asp700I GAANNNNTTC 2 cut(s) 590, 956
AspS9I GGNCC 3 cut(s) 106, 698, 1119
AsuC2I CCSGG 1 cut(s) 552
AvaI CYCGRG 1 cut(s) 225
AxyI CCTNAGG 1 cut(s) 883
BanI GGYRCC 1 cut(s) 1322
BanII GRGCYC 4 cut(s) 25, 275, 557, 1004
Bbv12I GWGCWC 1 cut(s) 25
BbvCI CCTCAGC 1 cut(s) 1005
BbvI GCAGC 1 cut(s) 385
BccI CCATC 8 cut(s) 140, 194, 206, 571, 718, 1093, 1237, 1246
BceAI ACGGC 2 cut(s) 517, 987
BciVI GTATCC 3 cut(s) 570, 841, 1363
BcnI CCSGG 1 cut(s) 552
BcoDI GTCTC 4 cut(s) 182, 675, 732, 962
BfaI CTAG 3 cut(s) 92, 122, 389
BfmI CTRYAG 2 cut(s) 16, 282
BfuI GTATCC 3 cut(s) 570, 841, 1363
BisI GCNGC 3 cut(s) 217, 243, 399
BlpI GCTNAGC 1 cut(s) 1371
BlsI GCNGC 3 cut(s) 218, 244, 400
Bme1390I CCNGG 1 cut(s) 552
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 3 cut(s) 106, 698, 1119
BmiI GGNNCC 5 cut(s) 175, 274, 817, 1001, 1324
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 2 cut(s) 457, 741
BplI GAGNNNNNCTC 2 cut(s) 761, 793
Bpu10I CCTNAGC 1 cut(s) 1005
Bpu1102I GCTNAGC 1 cut(s) 1371
BpuEI CTTGAG 7 cut(s) 36, 206, 396, 464, 507, 536, 1094
BpuMI CCSGG 1 cut(s) 552
BsaAI YACGTR 1 cut(s) 829
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 267, 356, 1326
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 797
Bse21I CCTNAGG 1 cut(s) 883
BseDI CCNNGG 3 cut(s) 267, 356, 1326
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 4 cut(s) 116, 279, 845, 1019
BseNI ACTGG 1 cut(s) 797
BseX3I CGGCCG 1 cut(s) 972
BseXI GCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 403
Bsh1285I CGRYCG 1 cut(s) 975
BshFI GGCC 5 cut(s) 57, 108, 700, 974, 1121
BshNI GGYRCC 1 cut(s) 1322
BsiEI CGRYCG 1 cut(s) 975
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 1 cut(s) 551
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 4 cut(s) 182, 675, 732, 962
BsmBI CGTCTC 2 cut(s) 732, 962
BsmFI GGGAC 1 cut(s) 941
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 5 cut(s) 57, 108, 700, 974, 1121
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 225
Bsp1286I GDGCHC 4 cut(s) 25, 275, 557, 1004
Bsp143I GATC 1 cut(s) 291
Bsp1720I GCTNAGC 1 cut(s) 1371
BspACI CCGC 3 cut(s) 68, 216, 243
BspANI GGCC 5 cut(s) 57, 108, 700, 974, 1121
BspCNI CTCAG 4 cut(s) 115, 280, 846, 1018
BspLI GGNNCC 5 cut(s) 175, 274, 817, 1001, 1324
BspT107I GGYRCC 1 cut(s) 1322
BspTNI GGTCTC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 797
BssECI CCNNGG 3 cut(s) 267, 356, 1326
BssMI GATC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 356
Bst4CI ACNGT 4 cut(s) 424, 572, 1055, 1116
Bst6I CTCTTC 7 cut(s) 103, 645, 770, 930, 960, 1204, 1209
BstBAI YACGTR 1 cut(s) 829
BstC8I GCNNGC 7 cut(s) 7, 418, 810, 814, 1296, 1377, 1381
BstDEI CTNAG 7 cut(s) 102, 288, 804, 854, 883, 1005, 1371
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 4 cut(s) 182, 675, 732, 962
BstMBI GATC 1 cut(s) 291
BstMCI CGRYCG 1 cut(s) 975
BstMWI GCNNNNNNNGC 4 cut(s) 398, 1304, 1320, 1376
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 2 cut(s) 16, 282
BstSNI TACGTA 1 cut(s) 829
BstV1I GCAGC 1 cut(s) 385
BstZI CGGCCG 1 cut(s) 972
Bsu36I CCTNAGG 1 cut(s) 883
BsuI GTATCC 3 cut(s) 570, 841, 1363
BsuRI GGCC 5 cut(s) 57, 108, 700, 974, 1121
BtgZI GCGATG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 3 cut(s) 16, 393, 1314
BtsIMutI CAGTG 5 cut(s) 16, 393, 552, 1121, 1314
Cac8I GCNNGC 7 cut(s) 7, 418, 810, 814, 1296, 1377, 1381
Cfr13I GGNCC 3 cut(s) 106, 698, 1119
Csp6I GTAC 1 cut(s) 826
CviAII CATG 1 cut(s) 455
CviQI GTAC 1 cut(s) 826
DdeI CTNAG 7 cut(s) 102, 288, 804, 854, 883, 1005, 1371
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 972
EagI CGGCCG 1 cut(s) 972
Eam1104I CTCTTC 7 cut(s) 103, 645, 770, 930, 960, 1204, 1209
EarI CTCTTC 7 cut(s) 103, 645, 770, 930, 960, 1204, 1209
Ecl136II GAGCTC 1 cut(s) 23
EclXI CGGCCG 1 cut(s) 972
Eco105I TACGTA 1 cut(s) 829
Eco130I CCWWGG 1 cut(s) 356
Eco24I GRGCYC 4 cut(s) 25, 275, 557, 1004
Eco31I GGTCTC 1 cut(s) 182
Eco52I CGGCCG 1 cut(s) 972
Eco53kI GAGCTC 1 cut(s) 23
Eco81I CCTNAGG 1 cut(s) 883
Eco88I CYCGRG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 1063
EcoT14I CCWWGG 1 cut(s) 356
EcoT38I GRGCYC 4 cut(s) 25, 275, 557, 1004
ErhI CCWWGG 1 cut(s) 356
Esp3I CGTCTC 2 cut(s) 732, 962
FaeI CATG 1 cut(s) 458
FaqI GGGAC 1 cut(s) 941
FatI CATG 1 cut(s) 454
FauI CCCGC 1 cut(s) 75
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 3 cut(s) 217, 243, 399
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 4 cut(s) 25, 275, 557, 1004
Fsp4HI GCNGC 3 cut(s) 217, 243, 399
FspBI CTAG 3 cut(s) 92, 122, 389
GluI GCNGC 3 cut(s) 217, 243, 399
HaeIII GGCC 5 cut(s) 57, 108, 700, 974, 1121
HapII CCGG 1 cut(s) 551
Hin1II CATG 1 cut(s) 458
HincII GTYRAC 3 cut(s) 312, 628, 690
HindII GTYRAC 3 cut(s) 312, 628, 690
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 4 cut(s) 469, 662, 776, 929
HpaII CCGG 1 cut(s) 551
Hpy166II GTNNAC 5 cut(s) 312, 628, 690, 775, 826
Hpy188I TCNGA 8 cut(s) 199, 503, 737, 855, 934, 951, 1098, 1330
Hpy188III TCNNGA 3 cut(s) 443, 515, 524
Hpy8I GTNNAC 5 cut(s) 312, 628, 690, 775, 826
Hpy99I CGWCG 1 cut(s) 824
HpyAV CCTTC 5 cut(s) 358, 412, 886, 1156, 1199
HpyCH4III ACNGT 4 cut(s) 424, 572, 1055, 1116
HpyCH4IV ACGT 2 cut(s) 27, 828
HpyCH4V TGCA 6 cut(s) 333, 420, 508, 786, 871, 1230
HpyF10VI GCNNNNNNNGC 4 cut(s) 398, 1304, 1320, 1376
HpyF3I CTNAG 7 cut(s) 102, 288, 804, 854, 883, 1005, 1371
HpySE526I ACGT 2 cut(s) 27, 828
Hsp92II CATG 1 cut(s) 458
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 5 cut(s) 179, 278, 821, 999, 1291
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 2 cut(s) 457, 741
MaeI CTAG 3 cut(s) 92, 122, 389
MaeII ACGT 2 cut(s) 27, 828
MaeIII GTNAC 3 cut(s) 115, 857, 1020
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 9 cut(s) 90, 127, 471, 662, 757, 947, 977, 1221, 1226
MfeI CAATTG 1 cut(s) 1365
MhlI GDGCHC 4 cut(s) 25, 275, 557, 1004
MlyI GAGTC 3 cut(s) 478, 770, 923
MmeI TCCRAC 1 cut(s) 205
MroXI GAANNNNTTC 2 cut(s) 590, 956
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 1365
Mva1269I GAATGC 1 cut(s) 1279
MwoI GCNNNNNNNGC 4 cut(s) 398, 1304, 1320, 1376
NciI CCSGG 1 cut(s) 552
NdeII GATC 1 cut(s) 291
NlaIII CATG 1 cut(s) 458
NlaIV GGNNCC 5 cut(s) 175, 274, 817, 1001, 1324
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 3 cut(s) 115, 857, 1020
PctI GAATGC 1 cut(s) 1279
PdmI GAANNNNTTC 2 cut(s) 590, 956
PfeI GAWTC 1 cut(s) 662
PkrI GCNGC 3 cut(s) 218, 244, 400
PleI GAGTC 3 cut(s) 477, 770, 923
PpsI GAGTC 3 cut(s) 477, 770, 923
Ppu21I YACGTR 1 cut(s) 829
PsiI TTATAA 1 cut(s) 342
Psp124BI GAGCTC 1 cut(s) 25
PspN4I GGNNCC 5 cut(s) 175, 274, 817, 1001, 1324
PspPI GGNCC 3 cut(s) 106, 698, 1119
RsaI GTAC 1 cut(s) 827
RsaNI GTAC 1 cut(s) 826
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 3 cut(s) 217, 243, 399
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 3 cut(s) 106, 698, 1119
SchI GAGTC 3 cut(s) 478, 770, 923
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 4 cut(s) 25, 275, 557, 1004
SfaNI GCATC 2 cut(s) 457, 741
SfcI CTRYAG 2 cut(s) 16, 282
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 7 cut(s) 51, 185, 411, 443, 515, 522, 1073
SmoI CTYRAG 7 cut(s) 51, 185, 411, 443, 515, 522, 1073
SnaBI TACGTA 1 cut(s) 829
SsiI CCGC 3 cut(s) 68, 216, 243
SspI AATATT 1 cut(s) 1339
SspMI CTAG 3 cut(s) 92, 122, 389
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 4 cut(s) 424, 572, 1055, 1116
TaiI ACGT 2 cut(s) 30, 831
TaqI TCGA 4 cut(s) 665, 768, 1011, 1067
TauI GCSGC 2 cut(s) 219, 245
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 5 cut(s) 16, 400, 552, 1121, 1314
TseFI GTSAC 3 cut(s) 115, 857, 1020
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 3 cut(s) 115, 857, 1020
TspDTI ATGAA 6 cut(s) 127, 607, 749, 1280, 1286, 1359
TspGWI ACGGA 2 cut(s) 166, 808
TspRI CASTG 5 cut(s) 16, 400, 552, 1121, 1314
XapI RAATTY 3 cut(s) 675, 1063, 1346
XmiI GTMKAC 1 cut(s) 774
XmnI GAANNNNTTC 2 cut(s) 590, 956
XspI CTAG 3 cut(s) 92, 122, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.