Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006837

Physical Location & Seq

Genomic Coordinates Reverse (-)

55163237 .. 55165047

Gene Structure 1811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0457000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGACTACGATTACCGCAAAACCTCATCCTACGGCGCGCAGATCCCGCCCTACCGCCCCGCCTCGTCATCACAGCCGATGTACGGACCGCCGCAGCCGTCGTCGTCGTTGTACCCCAGGGTCAGTCAACAACACGGTCAAGCGCCGGTTCCTACACCGTCTCACGGCGGCGGAGGTCACCGTCCCGTCCCTCATCACCAGACCGCAACCACCTCAGCTCCTCCTTCTTCGGGGTTGGGCATTCGAGTTATGATAAAGCCAGAGTATCGGATCACTCCTCCGCCTCAGTTGTCGACACAAGTCGGAGACATACCCCGAAGCAATTTCCAATTTGACTTTGATTTCGAGAGGAAAGTTTTGGCTGAAGCGCAGAAGGAAACCCCGAATTGGGGCAAGCTGGGGTTGGAAAACCTTCCACCACCTAAGGCTGTGGAGCCGCCGTCTTCTGCTTCCTCGTCCTCGGGTTCTATTGGTAACCCCCTCGTGAGGAAGTATGTCGCTTCAGGGCGCAGCCAAGAAGTAGTACCTCGTGCAGTTGCAACTTATGGTGACAATCCTGAAAAGGTTCGGGAATTTGTCCATGGGTTCAACGCTTTACATGAGATGGGGTTTCCTTCAGACAGTGTTGCCGATGCCCTTCTCATGTATGATAATGACAAGGAGAAAGCACTTGCCTATCTAATCAACAGTTCGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0032787 GO:0035251 GO:0042445 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0071704 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

232

Amino Acids

25.16

Weight (kDa)

7.94

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43820 AT2G43840 AT2G43840
fragaria_vesca	FvH4_1g00421
malus_domestica	MD02G1003300.v1.1 MD15G1146500.v1.1 MD15G1146700.v1.1
prunus_persica	Prupe.7G267900_v2.0.a1
pyrus_communis	pycom02g00180 pycom15g13150
rosa_chinensis	RchiOBHm_Chr2g0084921 RchiOBHm_Chr7g0212611
rosa_laevigata	RLG00000002877 RLG00000015649
rosa_multiflora	Rmu_co8326727.1_g000001 Rmu_sc0005246.1_g000002 Rmu_sc0008647.1_g000032
rosa_roxburghii	Rroxscaffold_3G00246670
rosa_rugosa	Rorug01G0457000 Rorug07G0135600
rosa_samantha	Rh2BG005900 Rh7AG267400 Rh7CG285900
rosa_wichuraiana	Rw2G000460 Rw7G023000 Rw7G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	293
AccII	CGCG	1 cut(s)	38
AclWI	GGATC	2 cut(s)	37, 278
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	3 cut(s)	384, 486, 600
AfaI	GTAC	3 cut(s)	83, 113, 525
AfiI	CCNNNNNNNGG	7 cut(s)	83, 164, 230, 387, 388, 389, 486
AgsI	TTSAA	1 cut(s)	589
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	2 cut(s)	218, 397
AluI	AGCT	2 cut(s)	218, 397
Alw26I	GTCTC	2 cut(s)	165, 300
AlwI	GGATC	2 cut(s)	37, 278
Ama87I	CYCGRG	1 cut(s)	460
ApeKI	GCWGC	2 cut(s)	94, 510
ApoI	RAATTY	1 cut(s)	572
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
Asp700I	GAANNNNTTC	2 cut(s)	411, 564
AspLEI	GCGC	5 cut(s)	38, 40, 145, 370, 510
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	170, 188, 560
AvaI	CYCGRG	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	86
AxyI	CCTNAGG	1 cut(s)	423
BauI	CACGAG	2 cut(s)	482, 528
BbsI	GAAGAC	1 cut(s)	435
BbvCI	CCTCAGC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	106, 522
BccI	CCATC	1 cut(s)	598
BceAI	ACGGC	4 cut(s)	49, 82, 181, 424
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	165, 300
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	5 cut(s)	92, 95, 169, 437, 511
BlsI	GCNGC	5 cut(s)	93, 96, 170, 438, 512
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	150, 435
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	622
BoxI	GACNNNNGTC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	214
BsaJI	CCNNGG	4 cut(s)	116, 117, 459, 580
BsaXI	ACNNNNNCTCC	4 cut(s)	202, 232, 425, 455
Bsc4I	CCNNNNNNNGG	7 cut(s)	83, 164, 230, 387, 388, 389, 486
Bse118I	RCCGGY	1 cut(s)	145
Bse21I	CCTNAGG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	4 cut(s)	116, 117, 459, 580
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	7 cut(s)	83, 164, 230, 387, 388, 389, 486
BseMII	CTCAG	2 cut(s)	228, 299
BsePI	GCGCGC	1 cut(s)	36
BseRI	GAGGAG	2 cut(s)	210, 267
BseXI	GCAGC	2 cut(s)	106, 522
BseYI	CCCAGC	1 cut(s)	397
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	2 cut(s)	168, 173
BslI	CCNNNNNNNGG	7 cut(s)	83, 164, 230, 387, 388, 389, 486
BsmAI	GTCTC	2 cut(s)	165, 300
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	168, 173
BsmI	GAATGC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	42, 270
Bsp19I	CCATGG	1 cut(s)	580
BspCNI	CTCAG	2 cut(s)	227, 298
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	695
BspLI	GGNNCC	2 cut(s)	150, 435
BspPI	GGATC	2 cut(s)	37, 278
BsrFI	RCCGGY	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	4 cut(s)	116, 117, 459, 580
BssHII	GCGCGC	1 cut(s)	36
BssMI	GATC	2 cut(s)	42, 270
BssSI	CACGAG	2 cut(s)	482, 528
BssT1I	CCWWGG	1 cut(s)	580
Bst2BI	CACGAG	2 cut(s)	482, 528
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	5 cut(s)	137, 159, 182, 623, 689
BstC8I	GCNNGC	2 cut(s)	38, 395
BstDEI	CTNAG	3 cut(s)	214, 285, 423
BstDSI	CCRYGG	1 cut(s)	580
BstEII	GGTNACC	2 cut(s)	176, 473
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	5 cut(s)	38, 40, 145, 370, 510
BstKTI	GATC	2 cut(s)	45, 273
BstMAI	GTCTC	2 cut(s)	165, 300
BstMBI	GATC	2 cut(s)	42, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	118
BstPAI	GACNNNNGTC	1 cut(s)	299
BstPI	GGTNACC	2 cut(s)	176, 473
BstSCI	CCNGG	1 cut(s)	116
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	106, 522
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	423
BtgI	CCRYGG	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	38, 395
CciI	TCATGA	1 cut(s)	695
CfoI	GCGC	5 cut(s)	38, 40, 145, 370, 510
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	86
CpoI	CGGWCCG	1 cut(s)	86
Csp6I	GTAC	3 cut(s)	82, 112, 524
CspI	CGGWCCG	1 cut(s)	86
CviAII	CATG	4 cut(s)	581, 599, 643, 696
CviJI	RGCY	9 cut(s)	76, 97, 218, 259, 362, 397, 428, 436, 513
CviKI_1	RGCY	9 cut(s)	76, 97, 218, 259, 362, 397, 428, 436, 513
CviQI	GTAC	3 cut(s)	82, 112, 524
DdeI	CTNAG	3 cut(s)	214, 285, 423
DpnI	GATC	2 cut(s)	44, 272
DpnII	GATC	2 cut(s)	42, 270
EciI	GGCGGA	2 cut(s)	186, 270
Eco130I	CCWWGG	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	3 cut(s)	384, 486, 600
Eco81I	CCTNAGG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	460
Eco91I	GGTNACC	2 cut(s)	176, 473
EcoO65I	GGTNACC	2 cut(s)	176, 473
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	4 cut(s)	584, 602, 646, 699
FaiI	YATR	9 cut(s)	251, 311, 495, 546, 582, 600, 644, 648, 697
FaqI	GGGAC	2 cut(s)	168, 173
FatI	CATG	4 cut(s)	580, 598, 642, 695
FauI	CCCGC	2 cut(s)	54, 67
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	5 cut(s)	92, 95, 169, 437, 511
FokI	GGATG	1 cut(s)	13
Fsp4HI	GCNGC	5 cut(s)	92, 95, 169, 437, 511
GlaI	GCGC	5 cut(s)	37, 39, 144, 369, 509
GluI	GCNGC	5 cut(s)	92, 95, 169, 437, 511
GsaI	CCCAGC	1 cut(s)	401
HaeII	RGCGCY	1 cut(s)	146
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	5 cut(s)	38, 40, 145, 370, 510
Hin1II	CATG	4 cut(s)	584, 602, 646, 699
Hin6I	GCGC	5 cut(s)	36, 38, 143, 368, 508
HinP1I	GCGC	5 cut(s)	36, 38, 143, 368, 508
HincII	GTYRAC	2 cut(s)	128, 294
HindII	GTYRAC	2 cut(s)	128, 294
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	3 cut(s)	170, 188, 560
Hpy166II	GTNNAC	2 cut(s)	128, 294
Hpy188I	TCNGA	3 cut(s)	270, 305, 619
Hpy188III	TCNNGA	5 cut(s)	346, 484, 557, 569, 696
Hpy8I	GTNNAC	2 cut(s)	128, 294
Hpy99I	CGWCG	3 cut(s)	103, 106, 109
HpyAV	CCTTC	5 cut(s)	234, 367, 422, 624, 647
HpyCH4III	ACNGT	5 cut(s)	137, 159, 182, 623, 689
HpyCH4V	TGCA	2 cut(s)	533, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	3 cut(s)	214, 285, 423
Hsp92II	CATG	4 cut(s)	584, 602, 646, 699
HspAI	GCGC	5 cut(s)	36, 38, 143, 368, 508
Kzo9I	GATC	2 cut(s)	42, 270
LmnI	GCTCC	2 cut(s)	223, 433
LpnPI	CCDG	8 cut(s)	103, 130, 159, 212, 273, 383, 489, 570
Lsp1109I	GCAGC	2 cut(s)	106, 522
LweI	GCATC	1 cut(s)	622
MaeIII	GTNAC	3 cut(s)	176, 473, 548
MalI	GATC	2 cut(s)	44, 272
MboI	GATC	2 cut(s)	42, 270
MboII	GAAGA	2 cut(s)	219, 435
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	4 cut(s)	322, 329, 385, 572
MmeI	TCCRAC	2 cut(s)	283, 384
MroXI	GAANNNNTTC	2 cut(s)	411, 564
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	2 cut(s)	42, 270
NlaIII	CATG	4 cut(s)	584, 602, 646, 699
NlaIV	GGNNCC	2 cut(s)	150, 435
NmuCI	GTSAC	2 cut(s)	176, 548
PagI	TCATGA	1 cut(s)	695
PasI	CCCWGGG	1 cut(s)	117
PauI	GCGCGC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	240
PdmI	GAANNNNTTC	2 cut(s)	411, 564
PkrI	GCNGC	5 cut(s)	93, 96, 170, 438, 512
PshAI	GACNNNNGTC	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	116
PspEI	GGTNACC	2 cut(s)	176, 473
PspFI	CCCAGC	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	150, 435
PspPI	GGNCC	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	42
PteI	GCGCGC	1 cut(s)	36
RsaI	GTAC	3 cut(s)	83, 113, 525
RsaNI	GTAC	3 cut(s)	82, 112, 524
Rsr2I	CGGWCCG	1 cut(s)	86
RsrII	CGGWCCG	1 cut(s)	86
SalI	GTCGAC	1 cut(s)	292
SatI	GCNGC	5 cut(s)	92, 95, 169, 437, 511
Sau3AI	GATC	2 cut(s)	42, 270
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	118
SetI	ASST	9 cut(s)	26, 178, 215, 220, 399, 414, 424, 529, 567
SfaNI	GCATC	1 cut(s)	622
SinI	GGWCC	1 cut(s)	86
Sse9I	AATT	4 cut(s)	322, 329, 385, 572
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	5 cut(s)	137, 159, 182, 623, 689
TaqI	TCGA	3 cut(s)	244, 293, 345
TasI	AATT	4 cut(s)	322, 329, 385, 572
TauI	GCSGC	3 cut(s)	94, 171, 439
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	2 cut(s)	176, 548
TseI	GCWGC	2 cut(s)	94, 510
Tsp45I	GTSAC	2 cut(s)	176, 548
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	293
XmnI	GAANNNNTTC	2 cut(s)	411, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.