Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006837

Physical Location & Seq

Genomic Coordinates Reverse (-)

10642414 .. 10643794

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0135600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATGGTGTCAAGCATGATTGTTTTCCATCTGCCTCCACAGATGGAAGGGCTTCGATCAGTGGAACCTAAAGTATCTGAGAAAGGGCTTCTTGATGCTATTCAGCAGGATTACTTCCCATCTGCCTCCATAGAGAGTTTTGAATTACCTCTTTCAGAATCAAAAAGGGTTGGGTCTGAAGGAAAGCCACTAGTCATCATTGATGATTATATAGGCTGCAGTAAGTATTTTGATTCTGGTAAAGCTGATGTTAAGATTTTTCAAGAGTTTCCGGTCCTTGAGAAGATGGATTCTGGAAATAAAGAGCCTCAAAAGAAAACTTCACTGGAAGAGTTTGATTCTGAGAAATCTGATTTCAGTGTGGCTGGAGTGAAGATTGCTGCAGGACAGACACCAGTCGTCATTGAGGATAATGGCTGGAAGGTATTTCATTTCCTGTTTCCTTCAAAAGAGAAATCTAATAGTGCTGATGAAGAATCCACAATTATGGAGTTCATTAGAATTTTGGGGGATGCATTTTTCTTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0032787 GO:0035251 GO:0042445 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0071704 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

176

Amino Acids

19.74

Weight (kDa)

4.67

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43820 AT2G43840 AT2G43840
fragaria_vesca	FvH4_1g00421
malus_domestica	MD02G1003300.v1.1 MD15G1146500.v1.1 MD15G1146700.v1.1
prunus_persica	Prupe.7G267900_v2.0.a1
pyrus_communis	pycom02g00180 pycom15g13150
rosa_chinensis	RchiOBHm_Chr2g0084921 RchiOBHm_Chr7g0212611
rosa_laevigata	RLG00000002877 RLG00000015649
rosa_multiflora	Rmu_co8326727.1_g000001 Rmu_sc0005246.1_g000002 Rmu_sc0008647.1_g000032
rosa_roxburghii	Rroxscaffold_3G00246670
rosa_rugosa	Rorug01G0457000 Rorug07G0135600
rosa_samantha	Rh2BG005900 Rh7AG267400 Rh7CG285900
rosa_wichuraiana	Rw2G000460 Rw7G023000 Rw7G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	198
AgsI	TTSAA	3 cut(s)	143, 263, 447
AhlI	ACTAGT	1 cut(s)	190
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	216, 380
ApoI	RAATTY	1 cut(s)	501
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	203, 367
BccI	CCATC	4 cut(s)	36, 37, 127, 280
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	217, 381
BisI	GCNGC	2 cut(s)	217, 381
BlsI	GCNGC	2 cut(s)	218, 382
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	2 cut(s)	85, 502
BoxI	GACNNNNGTC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	330, 395
BseGI	GGATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	69, 333
BseNI	ACTGG	2 cut(s)	330, 395
BseXI	GCAGC	2 cut(s)	203, 367
BsiSI	CCGG	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	70, 334
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	2 cut(s)	221, 385
BsrI	ACTGG	2 cut(s)	330, 395
BssMI	GATC	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	78, 342
BstF5I	GGATG	1 cut(s)	517
BstKTI	GATC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	56
BstPAI	GACNNNNGTC	1 cut(s)	395
BstSFI	CTRYAG	2 cut(s)	217, 381
BstV1I	GCAGC	2 cut(s)	203, 367
BstXI	CCANNNNNNTGG	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	517
BtsIMutI	CAGTG	3 cut(s)	66, 323, 364
Cfr13I	GGNCC	1 cut(s)	274
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	8 cut(s)	52, 88, 187, 216, 245, 307, 365, 417
CviKI_1	RGCY	8 cut(s)	52, 88, 187, 216, 245, 307, 365, 417
DdeI	CTNAG	2 cut(s)	78, 342
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	517
FaeI	CATG	1 cut(s)	19
FaiI	YATR	5 cut(s)	17, 131, 210, 212, 488
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	217, 381
FokI	GGATG	1 cut(s)	524
Fsp4HI	GCNGC	2 cut(s)	217, 381
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	2 cut(s)	217, 381
GsuI	CTGGAG	1 cut(s)	387
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	1 cut(s)	19
HinfI	GANTC	5 cut(s)	158, 233, 290, 338, 476
HpaII	CCGG	1 cut(s)	272
Hpy188I	TCNGA	5 cut(s)	79, 157, 178, 343, 352
Hpy188III	TCNNGA	3 cut(s)	92, 263, 294
HpyAV	CCTTC	4 cut(s)	41, 173, 415, 453
HpyCH4V	TGCA	3 cut(s)	219, 383, 515
HpyF3I	CTNAG	2 cut(s)	78, 342
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	56
Lsp1109I	GCAGC	2 cut(s)	203, 367
LweI	GCATC	2 cut(s)	85, 502
MaeI	CTAG	1 cut(s)	191
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MboII	GAAGA	4 cut(s)	295, 341, 385, 485
MluCI	AATT	3 cut(s)	143, 483, 501
MnlI	CCTC	5 cut(s)	45, 136, 159, 318, 400
Mph1103I	ATGCAT	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	1 cut(s)	272
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	66
NsiI	ATGCAT	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	5 cut(s)	158, 233, 290, 338, 476
PkrI	GCNGC	2 cut(s)	218, 382
PshAI	GACNNNNGTC	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	274
PstI	CTGCAG	2 cut(s)	221, 385
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	217, 381
Sau3AI	GATC	1 cut(s)	56
Sau96I	GGNCC	1 cut(s)	274
SetI	ASST	4 cut(s)	70, 151, 247, 426
SfaNI	GCATC	2 cut(s)	85, 502
SfcI	CTRYAG	2 cut(s)	217, 381
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	190
Sse9I	AATT	3 cut(s)	143, 483, 501
SspMI	CTAG	1 cut(s)	191
TaqI	TCGA	1 cut(s)	55
TasI	AATT	3 cut(s)	143, 483, 501
TfiI	GAWTC	5 cut(s)	158, 233, 290, 338, 476
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	3 cut(s)	66, 330, 364
TseI	GCWGC	2 cut(s)	216, 380
TspDTI	ATGAA	3 cut(s)	419, 484, 486
TspRI	CASTG	3 cut(s)	66, 330, 364
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.