Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8326727.1

Orthogroup ID

OG0006837

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 872

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8326727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 796 bp

ctctaataccgacaaagctgatttcattttcgccaacactttctacaagttagaggaagaggtggtggattccatgtctcaaatttgtccaatgttgacaatagggccaacaattccatctaaatacttggacaatagcatcagagacgacaaggagtacggacttcatctcttcgaggtagactcggtttgcaccgactggctcaacaccaagccagcaggctccgtcgtgtacgtatcctttggcagtatagccaatctgagtgacaagcaaatgcaggaacttgccttaggcttgaaggcaaccgacttccacttcttgtgggtggtcagggactccgaagtggcaaagcttccggaaaagttcaaagaagagacggccgaaaaaggcttgttagtaaattggagccctcagctcgaagtgttgtcacaagaagcagtagggtgttttttcactcacggtgggtggaattcgacaattgaggcattgagcttgggagtgccaatggtgttaatgccacagtgggccgaccagcctactaattccaaattggttgaggttctttggaaggttggggttagagtaaaggttgatgagaatagtggggtggaaggaagagaagagattgagttgtgcattaggaaagtgatgggggagatggggattgaaatgaaaatgaatgctaaaaagtggagggagctggctattgaggcagtgagcgagggtggcacctctgataagaatattgatgaatttgtatccaagttggcaattgctaagccagccagcgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0032787 GO:0035251 GO:0042445 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0071704 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

264

Amino Acids

29.42

Weight (kDa)

4.75

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43820 AT2G43840 AT2G43840
fragaria_vesca	FvH4_1g00421
malus_domestica	MD02G1003300.v1.1 MD15G1146500.v1.1 MD15G1146700.v1.1
prunus_persica	Prupe.7G267900_v2.0.a1
pyrus_communis	pycom02g00180 pycom15g13150
rosa_chinensis	RchiOBHm_Chr2g0084921 RchiOBHm_Chr7g0212611
rosa_laevigata	RLG00000002877 RLG00000015649
rosa_multiflora	Rmu_co8326727.1_g000001 Rmu_sc0005246.1_g000002 Rmu_sc0008647.1_g000032
rosa_roxburghii	Rroxscaffold_3G00246670
rosa_rugosa	Rorug01G0457000 Rorug07G0135600
rosa_samantha	Rh2BG005900 Rh7AG267400 Rh7CG285900
rosa_wichuraiana	Rw2G000460 Rw7G023000 Rw7G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	729
AccI	GTMKAC	1 cut(s)	181
AccIII	TCCGGA	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	3 cut(s)	82, 470, 753
AfaI	GTAC	2 cut(s)	159, 234
AgsI	TTSAA	3 cut(s)	299, 368, 669
AluBI	AGCT	5 cut(s)	18, 353, 416, 493, 701
AluI	AGCT	5 cut(s)	18, 353, 416, 493, 701
Alw26I	GTCTC	3 cut(s)	82, 139, 369
Aor13HI	TCCGGA	1 cut(s)	356
AoxI	GGCC	3 cut(s)	105, 379, 526
ApoI	RAATTY	3 cut(s)	82, 470, 753
AspS9I	GGNCC	2 cut(s)	105, 526
AxyI	CCTNAGG	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	729
BanII	GRGCYC	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	412
BccI	CCATC	3 cut(s)	125, 644, 653
BceAI	ACGGC	1 cut(s)	394
BciVI	GTATCC	2 cut(s)	248, 770
BcoDI	GTCTC	3 cut(s)	82, 139, 369
BfuI	GTATCC	2 cut(s)	248, 770
BlpI	GCTNAGC	1 cut(s)	778
BmgT120I	GGNCC	2 cut(s)	105, 526
BmiI	GGNNCC	3 cut(s)	224, 408, 731
BmsI	GCATC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
Bpu10I	CCTNAGC	1 cut(s)	412
Bpu1102I	GCTNAGC	1 cut(s)	778
BsaAI	YACGTR	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	204
Bse21I	CCTNAGG	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	252, 426
BseNI	ACTGG	1 cut(s)	204
BseX3I	CGGCCG	1 cut(s)	379
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	3 cut(s)	107, 381, 528
BshNI	GGYRCC	1 cut(s)	729
BsiEI	CGRYCG	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	348
BsmAI	GTCTC	3 cut(s)	82, 139, 369
BsmBI	CGTCTC	2 cut(s)	139, 369
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	686
BsnI	GGCC	3 cut(s)	107, 381, 528
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp13I	TCCGGA	1 cut(s)	356
Bsp1720I	GCTNAGC	1 cut(s)	778
BspANI	GGCC	3 cut(s)	107, 381, 528
BspCNI	CTCAG	2 cut(s)	253, 425
BspEI	TCCGGA	1 cut(s)	356
BspLI	GGNNCC	3 cut(s)	224, 408, 731
BspT107I	GGYRCC	1 cut(s)	729
BsrI	ACTGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	462, 523
Bst6I	CTCTTC	5 cut(s)	52, 177, 367, 611, 616
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	5 cut(s)	217, 221, 703, 784, 788
BstDEI	CTNAG	4 cut(s)	261, 290, 412, 778
BstMAI	GTCTC	3 cut(s)	82, 139, 369
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	3 cut(s)	711, 727, 783
BstSNI	TACGTA	1 cut(s)	236
BstZI	CGGCCG	1 cut(s)	379
Bsu36I	CCTNAGG	1 cut(s)	290
BsuI	GTATCC	2 cut(s)	248, 770
BsuRI	GGCC	3 cut(s)	107, 381, 528
BtsI	GCAGTG	1 cut(s)	721
BtsIMutI	CAGTG	2 cut(s)	528, 721
Cac8I	GCNNGC	5 cut(s)	217, 221, 703, 784, 788
Cfr13I	GGNCC	2 cut(s)	105, 526
Csp6I	GTAC	2 cut(s)	158, 233
CviAII	CATG	1 cut(s)	74
CviQI	GTAC	2 cut(s)	158, 233
DdeI	CTNAG	4 cut(s)	261, 290, 412, 778
EaeI	YGGCCR	1 cut(s)	379
EagI	CGGCCG	1 cut(s)	379
Eam1104I	CTCTTC	5 cut(s)	52, 177, 367, 611, 616
EarI	CTCTTC	5 cut(s)	52, 177, 367, 611, 616
EclXI	CGGCCG	1 cut(s)	379
Eco105I	TACGTA	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	411
Eco52I	CGGCCG	1 cut(s)	379
Eco81I	CCTNAGG	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	411
Esp3I	CGTCTC	2 cut(s)	139, 369
FaeI	CATG	1 cut(s)	77
FaiI	YATR	2 cut(s)	75, 252
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	107, 381, 528
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	3 cut(s)	69, 183, 336
HpaII	CCGG	1 cut(s)	357
Hpy166II	GTNNAC	3 cut(s)	97, 182, 233
Hpy188I	TCNGA	4 cut(s)	144, 262, 341, 737
Hpy188III	TCNNGA	1 cut(s)	357
Hpy8I	GTNNAC	3 cut(s)	97, 182, 233
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	3 cut(s)	293, 563, 606
HpyCH4III	ACNGT	2 cut(s)	462, 523
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	193, 278, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	711, 727, 783
HpyF3I	CTNAG	4 cut(s)	261, 290, 412, 778
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	356
LmnI	GCTCC	3 cut(s)	228, 406, 698
LpnPI	CCDG	8 cut(s)	185, 205, 229, 264, 317, 370, 546, 687
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	2 cut(s)	264, 427
MboII	GAAGA	5 cut(s)	69, 164, 384, 628, 633
MfeI	CAATTG	2 cut(s)	478, 772
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	9 cut(s)	82, 112, 401, 470, 478, 542, 549, 753, 772
MlyI	GAGTC	2 cut(s)	177, 330
MroI	TCCGGA	1 cut(s)	356
MseI	TTAA	1 cut(s)	513
MspI	CCGG	1 cut(s)	357
MunI	CAATTG	2 cut(s)	478, 772
Mva1269I	GAATGC	1 cut(s)	686
MwoI	GCNNNNNNNGC	3 cut(s)	711, 727, 783
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	3 cut(s)	224, 408, 731
NmuCI	GTSAC	2 cut(s)	264, 427
PctI	GAATGC	1 cut(s)	686
PfeI	GAWTC	1 cut(s)	69
PleI	GAGTC	2 cut(s)	177, 330
PpsI	GAGTC	2 cut(s)	177, 330
Ppu21I	YACGTR	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	224, 408, 731
PspPI	GGNCC	2 cut(s)	105, 526
RsaI	GTAC	2 cut(s)	159, 234
RsaNI	GTAC	2 cut(s)	158, 233
SaqAI	TTAA	1 cut(s)	513
Sau96I	GGNCC	2 cut(s)	105, 526
SchI	GAGTC	2 cut(s)	177, 330
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	1 cut(s)	148
SnaBI	TACGTA	1 cut(s)	236
Sse9I	AATT	9 cut(s)	82, 112, 401, 470, 478, 542, 549, 753, 772
SspI	AATATT	1 cut(s)	746
TaaI	ACNGT	2 cut(s)	462, 523
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	175, 418, 474
TasI	AATT	9 cut(s)	82, 112, 401, 470, 478, 542, 549, 753, 772
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	2 cut(s)	528, 721
TseFI	GTSAC	2 cut(s)	264, 427
Tsp45I	GTSAC	2 cut(s)	264, 427
TspDTI	ATGAA	5 cut(s)	14, 156, 687, 693, 766
TspGWI	ACGGA	2 cut(s)	175, 215
TspRI	CASTG	2 cut(s)	528, 721
XapI	RAATTY	3 cut(s)	82, 470, 753
XmiI	GTMKAC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.